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Bio::NEXUS::WeightSet is a Perl module that represents column weights in alignment ( for each character).

SYNOPSIS

new Bio::NEXUS::WeightSet($name, @weights, $iswt);

A module representing column weights in alignment (for each character)

METHODS

new

Title : new
Usage : $node = new Bio::NEXUS::WeightSet($name, @weights);
Function: Creates a new Bio::NEXUS::WeightSet object
Returns : Bio::NEXUS::WeightSet object
Args : none

set_weights

Title : set_weights
Usage : $weight->set_weights(@weights);
Function: stores it in the list weights
Returns : none
Args : list of weights

get_weights

Title : get_weights
Usage : @wts=@{$weightset->get_weights()};
Function: Returns the weights array
Returns : reference to array containing weights
Args : none

select_weights

Title : select_weights
Usage : $set->select_weights($columns);
Function: select a subset of characters
Returns : new self with subset of weights
Args : column numbers

is_wt

Title : is_wt
Usage : croak unless $weight->is_wt();
Function: Returns if object has weights (1 yes, 0 no)
Returns : weight existence (integer)
Args : none

set_name

Title : set_name
Usage : $weight->set_name($name);
Function: Sets the name of the weightset
Returns : none
Args : name (string)

get_name

Title : get_name
Usage : $name=$weight->get_name();
Function: Returns the name of the weightset
Returns : name (string)
Args : none

equals

Name : equals
Usage : $set->equals($another);
Function: compare if two WeightSet objects are equal
Returns : boolean
Args : an WeightSet object

Anti-Diet Pill project is a tool you can add to your Web site that your dieting visitors will appreciate.
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Content Area Focus is an extension used to solve the content area focus loss.

Target audience: those who are mostly using the keyboard to navigate around and switch between tabs; frequently they encounter situations in which the content area doesnt have focus.

Method: just giving focus to the content area for any "regular" keystrokes made when the main-window is in focus.

Chaos Visualization is a program for quickly calculating the amount of predictability in a very simple system: a spring with one side connected to the origin and the other to a weight under gravity.

This amount is chaos is visualized in TIFF images, which can be put in a sequence to show the evolution of chaotic behaviour in this system.

Distributed Access Control System is a complete, light-weight, single sign-on and role-based access control system distributed under an open source license. It provides:
- extended authentication and role-based access control capabilities for Apache-based web services, CGI programs, and virtually any program or script;
- a wide array of flexible, modular, and efficient authentication methods, including two-factor authentication and hardware tokens;
- powerful, rule-based authorization checking that can be applied transparently to any resource or activity (such as web services, web content, and program features) by Apache-based web services and CGI programs, or virtually any program or script;
- an Apache 2.0/2.2 module, suite of CGI programs, and collection of command line tools for Unix-type platforms, such as Linux, FreeBSD, and Solaris.
Enhancements:
- This release includes an important bugfix to local_passwd_authenticate that prevents invalid passwords from being accepted.
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Yet Another Swing Library (YASL in short) provides a light-weight framework for developing Swing-based applications along with a library of Swing components and utilities. Swing is a much-maligned but rich library for developing Java-based gui applications.
Despite what critics say, you can develop robust and responsive desktop applications with Swing. Unfortunately, Swing doesnt provide a ready-made framework for building applications although the building blocks are there. YASL attempts to provide that framework.
YASL is based on the Model-View-Controller pattern. It divides an application into gui components (View), action classes to handle user-driven events (Controller), and singleton classes (Model). The actions and singletons are stored in separate maps in key-class pairs.
The initialization of actions and singletons as well as the mapping of menu items to actions can be handled through xml configuration or in the code or both. The framework provides the glue that holds the components together and facilitates their interaction.
The framework provides ready-to-use tools for:
- Managing actions
- Managing singletons
- Threading calls to actions
- User preferences management
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- xml configuration
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Arena Scripting Language is a light-weight scripting language. The language uses a syntax and library similar to that of ANSI C, but adds automatic memory management and runtime polymorphism on top of that.
Main features:
- syntax similar to ANSI C
- standard library similar to ANSI C
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- runtime polymorphism
- support for exceptions
- support for anonymous functions
Enhancements:
- This release changes the system() library function to return the raw exit status as given by the operating system.