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Single Marker Association 2.0
Single Marker Association is a simple tool that calculates the single marker association between individual SNP markers. more>>
Single Marker Association is a simple tool that calculates the single marker association between individual SNP markers and a case/control dichotomy.
Usage:
The tool reads two files as input, the first is a set of case and the second a case of control haplotypes. The format of the files is one line per haplotype, where the SNP data is represented as 0 or 1, separated by white-space.
- The tool outputs a list of statistics for each marker
- The marker number (from left to right in the input data)
- The frequency of the 0 allele for the cases file
- The chi-square contingency table statistics for the marker
- The CDF of the chi-square statistics
- The p-value of the statistics (1-CDF)
Installation:
The SMA tool is written in C++. It should compile on any Unix like system. To install, download the source code and unpack it (tar xzf sma-v.tar.gz, where v is the version number of sma), then run make in the subdirectory sma-v created during unpacking.
Enhancements:
- Support for (unphased) genotype data.
<<lessUsage:
The tool reads two files as input, the first is a set of case and the second a case of control haplotypes. The format of the files is one line per haplotype, where the SNP data is represented as 0 or 1, separated by white-space.
- The tool outputs a list of statistics for each marker
- The marker number (from left to right in the input data)
- The frequency of the 0 allele for the cases file
- The chi-square contingency table statistics for the marker
- The CDF of the chi-square statistics
- The p-value of the statistics (1-CDF)
Installation:
The SMA tool is written in C++. It should compile on any Unix like system. To install, download the source code and unpack it (tar xzf sma-v.tar.gz, where v is the version number of sma), then run make in the subdirectory sma-v created during unpacking.
Enhancements:
- Support for (unphased) genotype data.
Download (0.008MB)
Added: 2006-01-19 License: GPL (GNU General Public License) Price:
1373 downloads
Lucidity Milestone 0 0.0.1
Lucidity hopes to become the next generation graphical user interface focused on speed and usability. more>>
Lucidity hopes to become the next generation graphical user interface focused on speed and usability.
Lucidity is being developed in Ruby and at this point Im the only developer. Although not much information is given on this site (right now, that is) I have a pretty good idea of where Im aiming towards with this interface.
Enhancements:
- This is a (testing only) local chat application that allows two or more instances of a chat application to communicate with each other.
<<lessLucidity is being developed in Ruby and at this point Im the only developer. Although not much information is given on this site (right now, that is) I have a pretty good idea of where Im aiming towards with this interface.
Enhancements:
- This is a (testing only) local chat application that allows two or more instances of a chat application to communicate with each other.
Download (0.014MB)
Added: 2006-03-30 License: GPL (GNU General Public License) Price:
1305 downloads
KDELirc Improved (patch) 0.2
KDELirc Improved (patch) adds some different new features to improve kdelirc usability. more>>
KDELirc Improved (patch) adds some different new features to improve kdelirc usability. Above all i added On Screen Display, using Konversation and Amarok codebase. When some key is pressed on the remote, its shown through OSD on your desktop, and mode changing is advertised too.
I also added an option to allow mode changing with one key only, instead of binding one key for each mode. A new DCOP method now allows to suspend and resume key binding for the remote (dcop irkick IRKick setEnabled true/false).
Enhancements:
- Removed Konversation OSD, using Amarok one instead (improved, with images and translucency support).
- Now showing icon for mode change, for better visual recognition.
- Also showing a little icon for the keypress, so indicating what mode is in use.
- Added an option to select a different font for mode change and key press.
- Added dcop call to show osd text through dcop.
<<lessI also added an option to allow mode changing with one key only, instead of binding one key for each mode. A new DCOP method now allows to suspend and resume key binding for the remote (dcop irkick IRKick setEnabled true/false).
Enhancements:
- Removed Konversation OSD, using Amarok one instead (improved, with images and translucency support).
- Now showing icon for mode change, for better visual recognition.
- Also showing a little icon for the keypress, so indicating what mode is in use.
- Added an option to select a different font for mode change and key press.
- Added dcop call to show osd text through dcop.
Download (0.015MB)
Added: 2006-12-23 License: GPL (GNU General Public License) Price:
1035 downloads
Wazobia Linux Live
Wazobia Linux is a complete Linux-based operating system designed and developed by Leapsoft. more>>
Wazobia Linux is a complete Linux-based operating system designed and developed by Leapsoft.
Wazobia Linux distribution delivers quality desktop computing solutions that combine the best of open source technologies with a corporate attention to completeness, usability, and support.
It represents the next step in the evolution of the desktop computing in Africa and the rest of the developing world.
Wazobia Linux provides everything todays computer user needs for home and office desktop computing, including a stabilized, secure, stable and reliable, user-friendly Linux based operating system plus a complete set of desktop applications--office suite, Web browser, instant messaging client, multimedia viewers, and graphical software.
It also offers the latest open source applications for developing applications, setting up a home network, running a Web server, and more. Wazobia Linux includes more than 16,000 pieces of software, but the core desktop installation fits on a single CD.
The OS is accessible in Hausa, Yoruba and Igbo, to make users feel more at home in their computing environment. Leapsoft provides professional support for Wazobia Linux.
<<lessWazobia Linux distribution delivers quality desktop computing solutions that combine the best of open source technologies with a corporate attention to completeness, usability, and support.
It represents the next step in the evolution of the desktop computing in Africa and the rest of the developing world.
Wazobia Linux provides everything todays computer user needs for home and office desktop computing, including a stabilized, secure, stable and reliable, user-friendly Linux based operating system plus a complete set of desktop applications--office suite, Web browser, instant messaging client, multimedia viewers, and graphical software.
It also offers the latest open source applications for developing applications, setting up a home network, running a Web server, and more. Wazobia Linux includes more than 16,000 pieces of software, but the core desktop installation fits on a single CD.
The OS is accessible in Hausa, Yoruba and Igbo, to make users feel more at home in their computing environment. Leapsoft provides professional support for Wazobia Linux.
Download (480MB)
Added: 2006-02-06 License: Free for non-commercial use Price:
1360 downloads
rpnKalc Alpha
rpnKalc is a very simple rpn (reverse polish notation) calculator. more>>
rpnKalc is a very simple rpn (reverse polish notation) calculator. Be warned I know very little about math and programming. Do not use for anything important such as money.
I am posting this in hope that i can get feedback on usability (things like keyboard commands) and if it functions proper.
Usage:
where #: is a place in the stack
d = drop
s = swap
n = sign change (1:)*(-1)
p = to the power 2:^1:
r = 1:root(2:)
+ = addition
- = subtracion
* = Multiplication
/ = division
Things that dont yet exist.
add trig functions
e
ln
log
variables
abs
pi
modules %
<<lessI am posting this in hope that i can get feedback on usability (things like keyboard commands) and if it functions proper.
Usage:
where #: is a place in the stack
d = drop
s = swap
n = sign change (1:)*(-1)
p = to the power 2:^1:
r = 1:root(2:)
+ = addition
- = subtracion
* = Multiplication
/ = division
Things that dont yet exist.
add trig functions
e
ln
log
variables
abs
pi
modules %
Download (0.012MB)
Added: 2006-06-23 License: GPL (GNU General Public License) Price:
1219 downloads
Blue Planet 0.4
Blue Planet is a KDE theme defined by simplicity, usability, dark-blue colors and future look. more>>
Blue Planet is a KDE theme defined by simplicity, usability, dark-blue colors and future look.
Its including background picture that is taken form http://www.guanajuatoenlinea.com .
For those with big resolution:
1600 x 1200 pixels background can be download here:
http://ic3.deviantart.com/images/i/2003/42/2/b/Titan_Blue___221.jpg
Iconset on this screenshots are Futurosoft icons (only changed Go! icon to Fedora default). Download it from here:
http://www.kde-look.org/content/show.php?content=50667
Background color of application is white due to compatibility issues (you can put black but than text isnt readable in some programs).
<<lessIts including background picture that is taken form http://www.guanajuatoenlinea.com .
For those with big resolution:
1600 x 1200 pixels background can be download here:
http://ic3.deviantart.com/images/i/2003/42/2/b/Titan_Blue___221.jpg
Iconset on this screenshots are Futurosoft icons (only changed Go! icon to Fedora default). Download it from here:
http://www.kde-look.org/content/show.php?content=50667
Background color of application is white due to compatibility issues (you can put black but than text isnt readable in some programs).
Download (0.80MB)
Added: 2007-04-16 License: GPL (GNU General Public License) Price:
922 downloads
WebClient for SVN 2.5.0
WebClient for SVN is the web interface for Subversion (SVN) repository. more>>
WebClient for SVN is the web interface for Subversion (SVN) repository. It offers a convenient way of browsing the repository content and its history plus simple write operations. SVN Web Client can
Main features:
- Improved performance and usability (compared to the former SVN Browser project)
- Folders and files content browsing
- Folders and files revisions browsing and compare
- Revision details, revisions compare
- Create/delete/modify files
- Create/delete folders
- Easy branches/tags browsing
- 100% Pure Java implementation of SVN access layer (using JavaSVN library)
- Multi-repository support
<<lessMain features:
- Improved performance and usability (compared to the former SVN Browser project)
- Folders and files content browsing
- Folders and files revisions browsing and compare
- Revision details, revisions compare
- Create/delete/modify files
- Create/delete folders
- Easy branches/tags browsing
- 100% Pure Java implementation of SVN access layer (using JavaSVN library)
- Multi-repository support
Download (1.6MB)
Added: 2006-04-10 License: The Apache License 2.0 Price:
741 downloads
IPsec-Tools 0.6.6
IPsec-Tools is a Linux port of the user-space tools from KAME. more>>
IPsec-Tools is a port of KAMEs IPsec utilities to the Linux-2.6 IPsec implementation. IPsec-Tools supports NetBSD and FreeBSD as well.
Contents:
libipsec
Library with PF_KEY implementation.
setkey
Tool to manipulate and dump the kernel Security Policy Database (SPD) and Security Association Database (SAD).
racoon
Internet Key Exchange (IKE) daemon for automatically keying IPsec connections.
racoonctl
A shell-based control tool for racoon
Enhancements:
- Some various bugfixes
<<lessContents:
libipsec
Library with PF_KEY implementation.
setkey
Tool to manipulate and dump the kernel Security Policy Database (SPD) and Security Association Database (SAD).
racoon
Internet Key Exchange (IKE) daemon for automatically keying IPsec connections.
racoonctl
A shell-based control tool for racoon
Enhancements:
- Some various bugfixes
Download (0.64MB)
Added: 2006-06-13 License: BSD License Price:
1236 downloads
Text::NSP::Measures::2D::CHI::x2 1.03
Text::NSP::Measures::2D::CHI::x2 is a Perl module that implements Pearsons chi squared measure of association for bigrams. more>>
Text::NSP::Measures::2D::CHI::x2 is a Perl module that implements Pearsons chi squared measure of association for bigrams.
SYNOPSIS
Basic Usage
use Text::NSP::Measures::2D::CHI::x2;
my $npp = 60; my $n1p = 20; my $np1 = 20; my $n11 = 10;
$x2_value = calculateStatistic( n11=>$n11,
n1p=>$n1p,
np1=>$np1,
npp=>$npp);
if( ($errorCode = getErrorCode()))
{
print STDERR $errorCode." - ".getErrorMessage()."n"";
}
else
{
print getStatisticName."value for bigram is ".$x2_value."n"";
}
<<lessSYNOPSIS
Basic Usage
use Text::NSP::Measures::2D::CHI::x2;
my $npp = 60; my $n1p = 20; my $np1 = 20; my $n11 = 10;
$x2_value = calculateStatistic( n11=>$n11,
n1p=>$n1p,
np1=>$np1,
npp=>$npp);
if( ($errorCode = getErrorCode()))
{
print STDERR $errorCode." - ".getErrorMessage()."n"";
}
else
{
print getStatisticName."value for bigram is ".$x2_value."n"";
}
Download (0.93MB)
Added: 2007-03-12 License: Perl Artistic License Price:
957 downloads
Clearlooks 2.0
Clearlooks is a GTK+ 2.x engine written in C that transforms your GNOME/XFCE desktop into a modern looking environment. more>>
Clearlooks is a GTK+ 2.x engine written in C that transforms your GNOME/XFCE desktop into a modern looking environment. Clearlooks 2 is fast and easy on the eyes.
Clearlooks is an attractive gtk engine with a focus on usability.
Clearlooks will transform your GNOME desktop into an attractive looking and usable environment.
<<lessClearlooks is an attractive gtk engine with a focus on usability.
Clearlooks will transform your GNOME desktop into an attractive looking and usable environment.
Download (0.004MB)
Added: 2005-12-19 License: GPL (GNU General Public License) Price:
1405 downloads
Other version of Clearlooks
License:GPL (GNU General Public License)
MyMiggy 1.0pre1
MyMiggy project is a KDE-based Amiga Emulator UI. more>>
MyMiggy project is a KDE-based Amiga Emulator UI.
UAE is a superb piece of software but perhaps a little hard to configure for the newbie or someone who wants to see some action fast.
MyMiggy aims to provide a complete, functional user interface to UAE.
Configurations are automatically loaded and saved; it comes already with some sane options that should allow fairly fast and painless configuration and usability.
<<lessUAE is a superb piece of software but perhaps a little hard to configure for the newbie or someone who wants to see some action fast.
MyMiggy aims to provide a complete, functional user interface to UAE.
Configurations are automatically loaded and saved; it comes already with some sane options that should allow fairly fast and painless configuration and usability.
Download (0.36MB)
Added: 2006-11-20 License: GPL (GNU General Public License) Price:
1069 downloads
libdvbpsi 0.1.5
libdvbpsi is a very simple and fully portable library designed for MPEG TS and DVB PSI table decoding and generation. more>>
libdvbpsi is a very simple and fully portable library designed for MPEG TS and DVB PSI table decoding and generation.
Currently supported platforms are GNU/Linux, Windows and Mac OS X, but it should work on almost any platform.
Main features:
- Program Association Table (PAT), decoder and generator.
- Program Map Table (PMT), decoder and generator.
- All MPEG 2 descriptors, decoders and generators.
Enhancements:
- This release fixes the handling of duplicate packets and packets containing multiple PSI sections and a crash in the subtitles descriptor decoder.
- New decoders (EBU teletext, DVB parental rating descriptor, stream identifier, EIT) and a new generator (SDT) were implemented.
- The library was also ported to Windows CE.
<<lessCurrently supported platforms are GNU/Linux, Windows and Mac OS X, but it should work on almost any platform.
Main features:
- Program Association Table (PAT), decoder and generator.
- Program Map Table (PMT), decoder and generator.
- All MPEG 2 descriptors, decoders and generators.
Enhancements:
- This release fixes the handling of duplicate packets and packets containing multiple PSI sections and a crash in the subtitles descriptor decoder.
- New decoders (EBU teletext, DVB parental rating descriptor, stream identifier, EIT) and a new generator (SDT) were implemented.
- The library was also ported to Windows CE.
Download (0.36MB)
Added: 2005-07-07 License: GPL (GNU General Public License) Price:
1580 downloads
YES Linux 2.2.3
YES Linux is a server appliance for small and medium size networks to quickly and easily build an Internet presence. more>>
YES Linux is an idea started by Arthur Copeland, CEO of Saphari.com. The idea was to build a low cost suite of products and services that could enable a Mom and Pop Store (MaPs) to quickly and easily build an internet presence.
The project was understood that not all MaPs need to have an internet presence, thus the suite would also have to work while not being connected to the internet. To the MaPs, it should be transparent.
Thus, YourESale was born... and the rest is history. MaPs - MaPs are defined as companies that have between 1 and 20 employees or total gross revenue of less than $200,000.00 per year.
YES Linux is a server appliance for small and medium size networks to quickly and easily build an Internet presence. It completely installs in under 10 minutes and 2 screens.
It features a secure Web server, a secure email server with Web-based email, a firewall, spam filtering, WebDAV support, an FTP server, an SSH server, a PostgreSQL database, the Resin J2EE server, Java, Apache Ant, PHP 5, Autonomous Backups, and complete Web-based administration.
Enhancements:
- addition:
- added mod_auth_msfix
- added xmlstarlet
- removal:
- removed mondo
- removed mindi
- removed dvdrecord
- removed lzop
- removed lzo
- removed star
- removed afio
- removed buffer
- updates:
- updated gnupg
- updated rsync
- updated phppgadmin
- updated findutils
- updated java
- updated yes-java
- updated yes-backup - removed mondo and mindi and added simple multi volume homegrown
- updated yes-website - added ms auth client fix, fixed default website formatting, Changed to YES Technology Association, added new group to webdav
- updated yes-admin - added ms auth client fix, Changed to YES Technology Association, added new group to webdav
- updated yes-configuration - added default httpd configuration area to change ip, increased the max heap size
- updated yes-rebrand - Changed to YES Technology Association
- updated yes-boot - Changed to YES Technology Association
- updated yes-dns - Changed to YES Technology Association
- updated yes-intro - Changed to YES Technology Association
- updated yes-mail - Changed to YES Technology Association
- updated yes-stats - Changed to YES Technology Association
- updated yes-authentication - added user management
- updated yes-security - added user management
- updated yes-dbadmin - spec file added reporting for phppgadmin
<<lessThe project was understood that not all MaPs need to have an internet presence, thus the suite would also have to work while not being connected to the internet. To the MaPs, it should be transparent.
Thus, YourESale was born... and the rest is history. MaPs - MaPs are defined as companies that have between 1 and 20 employees or total gross revenue of less than $200,000.00 per year.
YES Linux is a server appliance for small and medium size networks to quickly and easily build an Internet presence. It completely installs in under 10 minutes and 2 screens.
It features a secure Web server, a secure email server with Web-based email, a firewall, spam filtering, WebDAV support, an FTP server, an SSH server, a PostgreSQL database, the Resin J2EE server, Java, Apache Ant, PHP 5, Autonomous Backups, and complete Web-based administration.
Enhancements:
- addition:
- added mod_auth_msfix
- added xmlstarlet
- removal:
- removed mondo
- removed mindi
- removed dvdrecord
- removed lzop
- removed lzo
- removed star
- removed afio
- removed buffer
- updates:
- updated gnupg
- updated rsync
- updated phppgadmin
- updated findutils
- updated java
- updated yes-java
- updated yes-backup - removed mondo and mindi and added simple multi volume homegrown
- updated yes-website - added ms auth client fix, fixed default website formatting, Changed to YES Technology Association, added new group to webdav
- updated yes-admin - added ms auth client fix, Changed to YES Technology Association, added new group to webdav
- updated yes-configuration - added default httpd configuration area to change ip, increased the max heap size
- updated yes-rebrand - Changed to YES Technology Association
- updated yes-boot - Changed to YES Technology Association
- updated yes-dns - Changed to YES Technology Association
- updated yes-intro - Changed to YES Technology Association
- updated yes-mail - Changed to YES Technology Association
- updated yes-stats - Changed to YES Technology Association
- updated yes-authentication - added user management
- updated yes-security - added user management
- updated yes-dbadmin - spec file added reporting for phppgadmin
Download (462.1MB)
Added: 2005-05-12 License: GPL (GNU General Public License) Price:
1625 downloads
Text::NSP::Measures 1.03
Text::NSP::Measures is a Perl module for computing association scores of Ngrams. more>>
Text::NSP::Measures is a Perl module for computing association scores of Ngrams. This module provides the basic framework for these measures.
SYNOPSIS
Basic Usage
use Text::NSP::Measures::2D::MI::ll;
my $npp = 60; my $n1p = 20; my $np1 = 20; my $n11 = 10;
$ll_value = calculateStatistic( n11=>$n11,
n1p=>$n1p,
np1=>$np1,
npp=>$npp);
if( ($errorCode = getErrorCode()))
{
print STDERR $errorCode." - ".getErrorMessage()."n"";
}
else
{
print getStatisticName."value for bigram is ".$ll_value."n"";
}
<<lessSYNOPSIS
Basic Usage
use Text::NSP::Measures::2D::MI::ll;
my $npp = 60; my $n1p = 20; my $np1 = 20; my $n11 = 10;
$ll_value = calculateStatistic( n11=>$n11,
n1p=>$n1p,
np1=>$np1,
npp=>$npp);
if( ($errorCode = getErrorCode()))
{
print STDERR $errorCode." - ".getErrorMessage()."n"";
}
else
{
print getStatisticName."value for bigram is ".$ll_value."n"";
}
Download (0.94MB)
Added: 2006-10-19 License: Perl Artistic License Price:
1100 downloads
reciteword 0.8.3
reciteword project is an education software to help people study English. more>>
reciteword project is an education software to help people study English.
reciteword is education software developed using GTK 2 to help people study English and recite English words.
It has a very beautiful interface to make reciting words an interesing thing.
It can change skins, and comes with many sound events, including over 400 books for you to choose.
It also includes a dictionary, which can also run separately.
Enhancements:
- Update books.
- Usability improve on Fedora core 5
<<lessreciteword is education software developed using GTK 2 to help people study English and recite English words.
It has a very beautiful interface to make reciting words an interesing thing.
It can change skins, and comes with many sound events, including over 400 books for you to choose.
It also includes a dictionary, which can also run separately.
Enhancements:
- Update books.
- Usability improve on Fedora core 5
Download (7.4MB)
Added: 2006-10-19 License: GPL (GNU General Public License) Price:
1100 downloads
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