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OSCAR Cluster 5.0

OSCAR Cluster 5.0


OSCAR Cluster is a Linux cluster installer based on best known practices. more>>
OSCAR version 4.0 is a snapshot of the best known methods for building, programming, and using clusters. OSCAR Cluster project consists of a fully integrated and easy to install software bundle designed for high performance cluster computing.

Everything needed to install, build, maintain, and use a modest sized Linux cluster is included in the suite, making it unnecessary to download or even install any individual software packages on your cluster.
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Added: 2006-11-12 License: GPL (GNU General Public License) Price:
1088 downloads
Sun::Solaris::Ucred 1.1

Sun::Solaris::Ucred 1.1


Sun::Solaris::Ucred is a Perl interface to User Credentials. more>>
Sun::Solaris::Ucred is a Perl interface to User Credentials.

SYNOPSIS

use Sun::Solaris::Ucred qw(:ALL);

This module provides wrappers for the Ucred-related system and library calls.

Functions

ucred_get($pid)

This function returns the credential of the process specified by $pid, if the process exists and the calling process is permitted to obtain the credentials of that process.

getpeerucred($fd)

If $fd is a connected connection oriented TLI endpoint, a connected SOCK_STREAM or SOCK_SEQPKT socket, getpeerucred will return the user credential of the peer at the time the connection was established, if availble.
ucred_geteuid($ucred)

This function returns the effective uid of a user credential, if available.
ucred_getruid($ucred)
This function returns the real uid of a user credential, if available.
ucred_getsuid($ucred)
This function returns the saved uid of a user credential, if available.
ucred_getegid($ucred)
This function returns the effective group of a user credential, if available.
ucred_getrgid($ucred)
This function returns the real group of a user credential, if available.
ucred_getsgid($ucred)
This function returns the saved group of a user credential, if available.
ucred_getgroups($ucred)
This function returns the list of supplemental groups of a user credential, if available. An array of groups is returned in ARRAY context; the number of groups is returned in SCALAR context.
ucred_getprivset($ucred, $which)
This function returns the privilege set specified by $which of a user credential, if available.

ucred_getpflags($ucred, $flags)

This function returns the value of a specific process flag of a user credential, if available.

ucred_getpid($ucred)
This function returns the process id of a user credential, if available.
ucred_getzoneid($ucred)

This function returns the zone id of a user credential, if available.

Exports

By default nothing is exported from this module. The following tags can be used to selectively import constants and functions defined in this module:

:SYSCALLS ucred_get(), getpeerucred()

:LIBCALLS ucred_geteuid(), ucred_getruid(), ucred_getsuid(),
ucred_getegid(), ucred_getrgid(), ucred_getsgid(),
ucred_getgroups(), ucred_getprivset(), ucred_getpflags(),
ucred_getpid(), ucred_getzone()

:CONSTANTS

:VARIABLES %PRIVILEGES, %PRIVSETS

:ALL :SYSCALLS, :LIBCALLS, and :CONSTANTS

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Added: 2007-04-13 License: Perl Artistic License Price:
924 downloads
Rocks Cluster 4.3

Rocks Cluster 4.3


Rocks Cluster Tool Kit is a Turnkey Linux COTS Clusters for x86 and IA64. more>>
Rocks Cluster is a complete "cluster on a CD" solution for x86 and IA64 Red Hat Linux COTS clusters.
Building a Rocks cluster does not require any experience in clustering, yet a cluster architect will find a flexible and programmatic way to redesign the entire software stack just below the surface (appropriately hidden from the majority of users).
Although Rocks includes the tools expected from any clustering software stack (PBS, Maui, GM support, Ganglia, etc), it is unique in its simplicity of installation.
From a hardware component and raw processing power perspective, commodity clusters are phenomenal price/performance compute engines. However, if a scalable ``cluster management strategy is not adopted, the favorable economics of clusters are offset by the additional on-going personnel costs involved to ``care and feed for the machine. The complexity of cluster management (e.g., determining if all nodes have a consistent set of software) often overwhelms part-time cluster administrators, who are usually domain application scientists. When this occurs, machine state is forced to either of two extremes: the cluster is not stable due to configuration problems, or software becomes stale, security holes abound, and known software bugs remain unpatched.
While earlier clustering toolkits expend a great deal of effort (i.e., software) to compare configurations of nodes, Rocks makes complete Operating System (OS) installation on a node the basic management tool. With attention to complete automation of this process, it becomes faster to reinstall all nodes to a known configuration than it is to determine if nodes were out of synchronization in the first place. Unlike a users desktop, the OS on a cluster node is considered to be soft state that can be changed and/or updated rapidly.
This is clearly more heavywieght than the philosophy of configuration management tools [Cfengine] that perform exhaustive examination and parity checking of an installed OS. At first glance, it seems wrong to reinstall the OS when a configuration parameter needs to be changed. Indeed, for a single node this might seem too severe. However, this approach scales exceptionally well, making it a preferred mode for even a modest-sized cluster. Because the OS can be installed from scratch in a short period of time, different (and perhaps incompatible) application-specific configurations can easily be installed on nodes. In addition, this structure insures any upgrade will not interfere with actively running jobs.
One of the key ingredients of Rocks is a robust mechanism to produce customized distributions (with security patches pre-applied) that define the complete set of software for a particular node. A cluster may require several node types including compute nodes, frontend nodes file servers, and monitoring nodes. Each of these roles requires a specialized software set. Within a distribution, different node types are defined with a machine specific Red Hat Kickstart file, made from a Rocks Kickstart Graph.
A Kickstart file is a text-based description of all the software packages and software configuration to be deployed on a node. The Rocks Kickstart Graph is an XML-based tree structure used to define RedHat Kickstart files. By using a graph, Rocks can efficiently define node types without duplicating shared components. Similiar to mammalian species sharing 80% of their genes, Rocks node types share much of their software set. The Rocks Kickstart Graph easily defines the differences between node types without duplicating the description of their similarities. See the Bibliography section for papers that describe the design of this structure in more depth.
By leveraging this installation technology, we can abstract out many of the hardware differences and allow the Kickstart process to autodetect the correct hardware modules to load (e.g., disk subsystem type: SCSI, IDE, integrated RAID adapter; Ethernet interfaces; and high-speed network interfaces). Further, we benefit from the robust and rich support that commercial Linux distributions must have to be viable in todays rapidly advancing marketplace.
Wherever possible, Rocks uses automatic methods to determine configuration differences. Yet, because clusters are unified machines, there are a few services that require ``global knowledge of the machine -- e.g., a listing of all compute nodes for the hosts database and queuing system. Rocks uses an SQL database to store the definitions of these global configurations and then generates database reports to create service-specific configuration files (e.g., DHCP configuration file, /etc/hosts, and PBS nodes file).
Enhancements:
- Rocks v4.3 is released for i386 and x86_64 CPU architectures. New features: Rocks command line - initial release of the Rocks command line which facilitates non-SQL administrative access to the database; PXE First - hosts can now be configured in BIOS with a boot order of CD, PXE, hard disk. Enhancements: based on CentOS 4.5 and all updates as of July 4, 2007; Anaconda installer updated to 10.1.1.63; performance improvement when building torrent files for the Avalanche Installer; database indirects, more flexibility with Rocks variables; Globus updated to gt4.0.4 with web services....
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Added: 2007-07-07 License: BSD License Price:
511 downloads
Sun::Solaris::Task 1.2

Sun::Solaris::Task 1.2


Sun::Solaris::Task is a Perl interface to Tasks. more>>
Sun::Solaris::Task is a Perl interface to Tasks.

SYNOPSIS

use Sun::Solaris::Task qw(:ALL);
my $taskid = gettaskid();

This module provides wrappers for the gettaskid(2) and settaskid(2) system calls.

Constants

TASK_NORMAL, TASK_FINAL.

Functions

settaskid($project, $flags)

The $project parameter must be a valid project ID and the $flags parameter must be TASK_NORMAL or TASK_FINAL. The parameters are passed through directly to the underlying settaskid() system call. The new task ID is returned if the call succeeds. On failure -1 is returned.

gettaskid()

This function returns the numeric task ID of the calling process, or undef if the underlying gettaskid() system call is unsuccessful.

Exports

By default nothing is exported from this module. The following tags can be used to selectively import constants and functions defined in this module:

:SYSCALLS settaskid() and gettaskid()

:CONSTANTS TASK_NORMAL and TASK_FINAL

:ALL :SYSCALLS and :CONSTANTS

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Added: 2007-04-13 License: Perl Artistic License Price:
930 downloads
Image Cluster 0.1

Image Cluster 0.1


Image Cluster copies and renames images based on Exif data and file number names. more>>
Image Cluster copies and renames images based on Exif data and file number names. Image Cluster also clusters those images into directories based on a variable sliding window (with a default of 36 hours), which makes it easy to group images based on events without manual intervention.

The inspiration for this program came from recently getting a new Canon SD500 camera to replace my Canon S30 that Id had for years. The upside, the Canon SD500 rocks! The downside, I now have 2 cameras that are burning through the same sequence numbers, so my previous solution of just putting all the files in to directories by the first 2 digits of the sequence numbers was no longer going to work.

Imagecluster solves this problem, plus another grouping problem that Id been thinking about, by extracting the CreateDate and FileNumber exif tags from the images, and using that as the basis of a new filename (typically YYYY:mm:dd_HH:MM:SS_FileNumber.jpg). This ensures that 2 images taken at the same second have an even smaller chance of colliding, as their camera sequence numbers would have to also be the same at that second.

But that is just the first step. I have noticed that I am an occational photographer, so take pictures in bursts, often for a weekend of hanging out with folks, though sometimes for a vacation as well. This got me thinking. What I really needed is a tool that also creates directories that allows for some minimum tollerance between CreateDate, that is used to cluster images. For me, the optimum value seems to be 36 hours, though this is configurable via the command line.

This took me an afternoon to pull together, Im sure it could be smarter, but it is useful enough to post for others to use.

Options:

-d directory
Set the target directory for images. Defaults to /tmp/photos, which is probably not what you want.

-D
Dryrun. Tells you what the program would have done.

-h
Print out help message

-s
Seperator character. It defaults to : (i.e. 2005:10:09...), but is user configurable because my friend Clemens wants to use - (i.e. 2005-10-09) instead.

-t
Set the tollerance for image clustering. This is the maximum time between any 2 pictures in a cluster, which will cause a new cluster to be created. The name of the cluster will be YYYY:MM:DD of the first image in the cluster, even if it spans multiple days. Because this tollerance is the maximum time between any two images in the cluster, it is possible that all images you have ever taken could be in 1 cluster, if you took a picture every day of your life. Hence, this feature isnt useful to everyone. If you are that kind of person, set tollerance to 16 hours or something, and youll tend to get 1 day sized buckets.

-v
Prints verbose output
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Added: 2006-02-10 License: GPL (GNU General Public License) Price:
1355 downloads
Sun::Solaris::Privilege 1.2

Sun::Solaris::Privilege 1.2


Sun::Solaris::Privilege is a Perl interface to Privileges. more>>
Sun::Solaris::Privilege is a Perl interface to Privileges.

SYNOPSIS

use Sun::Solaris::Privilege qw(:ALL);

This module provides wrappers for the Privilege-related system and library calls. Also provided are constants from the various Privilege-related headers and dynamically generated constants for all the privileges and privilege sets.

Functions

getppriv($which)

This function returns the process privilege set specified by $which.

setppriv($op, $which, $set)

This function modified the privilege set specified by $which in the as specified by the $op and $set arguments. If $op is PRIV_ON the privileges in $set are added to the set specified; if $op is PRIV_OFF, the privileges in $set are removed from the set specified; if $op is PRIV_SET, the specified set is made equal to $set.

getpflags($flag)

Returns the value associated with process $flag or undef on error. Possible values for $flag are PRIV_AWARE and PRIV_DEBUG.

setppflags($flag, $val)

Sets the process flag $flag to $val.

priv_fillset()

This returns a new privilege set with all privileges set.

priv_emptyset()

This returns a new empty privilege set.

priv_isemptyset($set)

This function returns whether $set is empty or not.

priv_isfullset($set)

This function returns whether $set is full or not.

priv_isequalset($a, $b)

This function returns whether sets $a and $b are equal.

priv_issubset($a, $b)

This function returns whether set $a is a subset of $b.

priv_ismember($set, $priv)

This function returns whether $priv is a member of $set.

priv_ineffect($priv)

This function returned whether $priv is in the process effective set.

priv_intersect($a, $b)

This function returns a new privilege set which is the intersection of $a and $b

priv_union($a, $b)

This function returns a new privilege set which is the union of $a and $b

priv_inverse($a)

This function returns a new privilege set which is the inverse of $a.

priv_addset($set, $priv)

This functon adds the privilege $priv to $set.

priv_copyset($a)

This function returns a copy of the privilege set $a.

priv_delset($set, $priv)

This function remove the privilege $priv from $set.

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Added: 2007-04-13 License: Perl Artistic License Price:
924 downloads
Algorithm::Cluster 1.35

Algorithm::Cluster 1.35


Algorithm::Cluster is a Perl interface to the C Clustering Library. more>>
Algorithm::Cluster is a Perl interface to the C Clustering Library.

This module is an interface to the C Clustering Library, a general purpose library implementing functions for hierarchical clustering (pairwise simple, complete, average, and centroid linkage), along with k-means and k-medians clustering, and 2D self-organizing maps.

This library was developed at the Human Genome Center of the University of Tokyo. The C Clustering Library is distributed along with Cluster 3.0, an enhanced version of the famous Cluster program originally written by Michael Eisen while at Stanford University.

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Added: 2007-05-16 License: Perl Artistic License Price:
894 downloads
Blender For Solaris 2.44

Blender For Solaris 2.44


High quality 3D sofeware For Solaris more>> Aimed world-wide at media professionals and artists, Blender can be used to create 3D visualizations, stills as well as broadcast and cinema quality video, while the incorporation of a real-time 3D engine allows for the creation of 3D interactive content for stand-alone playback.
Originally developed by the company Not a Number (NaN), Blender now is continued as Free Software, with the source code available under the GNU GPL license. It now continues development by the Blender Foundation in the Netherlands.
Key Features:
For Linux; Solaris 2.8/Python 2.5
Fully integrated creation suite, offering a broad range of essential tools for the creation of 3D content, including modeling, uv-mapping, texturing, rigging, weighting, animation, particle and other simulation, scripting, rendering, compositing, post-production, and game creation;
Cross platform, with OpenGL uniform GUI on all platforms, ready to use for all versions of Windows (98, NT, 2000, XP), Linux, OS X, FreeBSD, Irix, Sun and numerous other operating systems;
High quality 3D architecture enabling fast and efficient creation work-flow;
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Added: 2009-04-12 License: Freeware Price: Free
194 downloads
Solaris::Kstat 0.05a

Solaris::Kstat 0.05a


Solaris::Kstat is a Perl module to access Solaris Kstats from Perl. more>>
Solaris::Kstat is a Perl module to access Solaris Kstats from Perl.

SYNOPSIS

use Solaris::Kstat;
my $kstat = Solaris::Kstat->new();
my ($usr1, $sys1, $wio1, $idle1) =
@{$kstat->{cpu_stat}{0}{cpu_stat0}}{qw(user kernel wait idle)};
print("usr sys wio idlen");
while (1)
{
sleep 5;
if ($kstat->update()) { print("Configuration changedn"); }
my ($usr2, $sys2, $wio2, $idle2) =
@{$kstat->{cpu_stat}{0}{cpu_stat0}}{qw(user kernel wait idle)};
printf(" %.2d %.2d %.2d %.2dn",
($usr2 - $usr1) / 5, ($sys2 - $sys1) / 5,
($wio2 - $wio1) / 5, ($idle2 - $idle1) / 5);
$usr1 = $usr2; $sys1 = $sys2; $wio1 = $wio2; $idle1 = $idle2;
}

This module provides a tied hash interface to the Solaris kstats library. The kstats library allows you to get access to all the stats used by sar, iostat, vmstat etc, plus a lot of others that arent accessible through the usual utilities.
Solaris categorises statistics using a 3-part key - module, instance and name. For example, the root disk stats can be found under sd.0.sd0, and the cpu statistics can be found under cpu_stat.0.cpu_stat0, as in the above example. The method Solaris::Kstats-new()> creates a new 3-layer tree of perl hashes with exactly the same structure - i.e. the stats for disk 0 can be accessed as $ks-{sd}{0}{sd0}>. The bottom (4th) layer is a tied hash used to hold the individual statistics values for a particular system resource.

Creating a Solaris::Kstat object doesnt actually read all the possible statistics in, as this would be horribly slow and inefficient. Instead it creates a 3-layer structure as described above, and only reads in the individual statistics as you reference them. For example, accessing $ks-{sd}{0}{sd0}{reads} will read in all the statistics for sd0, including writes, bytes read/written, service times etc. Once you have accessed a bottom level statitics value, calling $ks->update() will automatically update all the individual values of any statistics that you have accessed.

Note that there are two values per bottom-level hash that can be read without causing the full set of statistics to be read from the kernel. These are "class" which is the kstat class of the statistics and "crtime" which is the time that the kstat was created. See kstat(3K) for full details of these fields.

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Added: 2007-06-13 License: Perl Artistic License Price:
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Bio::ClusterI 1.4

Bio::ClusterI 1.4


Bio::ClusterI module is a cluster Perl interface. more>>
Bio::ClusterI module is a cluster Perl interface.

SYNOPSIS

# see the implementations of this interface for details but # basically
my $cluster= $cluster->new(-description=>"POLYUBIQUITIN",
-members =>[$seq1,$seq2]);
my @members = $cluster->get_members();
my @sub_members = $cluster->get_members(-species=>"homo sapiens");

This interface is the basic structure for a cluster of bioperl objects. In this case it is up to the implementer to check arguments and initialize whatever new object the implementing class is designed for.

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Added: 2007-08-16 License: Perl Artistic License Price:
799 downloads
Document clustering 0.2

Document clustering 0.2


Document clustering project is a data mining suite to cluster a document set. more>>
Document clustering project is a data mining suite to cluster a document set. This set of tools was implemented from a series of papers: "Clustering Web Pages Semantically using Combinatorial Topology", "Data mining using granular computing", and "A fast association rule algorithm based on bitmap and granular computing".
Enhancements:
- A bug with hash table has been fixed.
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Added: 2007-05-18 License: GPL (GNU General Public License) Price:
906 downloads
Linux Cluster Manager 2.75-1

Linux Cluster Manager 2.75-1


Linux Cluster Manager is a graphical tool for managing multiple Linux systems from a central location. more>>
Linux Cluster Manager is a graphical tool for managing multiple Linux systems from a central location. Meant primarily for Beowulf style clusters, it has many useful features for general system administration and even some non Linux specific possibilities like block level imaging.
Imaging with LCM is quick and easy as each node has its IP and hostname changed ready for boot as an independant node preloaded with all of your applications. Using a file based image, items can be changed such as the target device, the file system capacity, or even the file system type. Imagine requiring a new partition on boot disks already filled across hundreds of machines. It is a simple property change, re-image the node(s), and you are ready to go.
Image creation can be done from a running system or LCM can remote power on a node through WOL, PXE boot it, collect an image, and power off the node when complete.
All operations are simple point and click, no command line options to remember (these are optional), or complicated setup.
Main features:
- Easy to use GUI for all operations
- Real time status information for all nodes
- Connect to individual nodes via a user specified protocol (ssh, rsh, rlogin ,etc)
- Report on running processes across the cluster
Imaging Features
- Imaged nodes have IP and hostname information changed automatically, just image and boot
- Block level system imaging (can be used for any x86 based operating system)
- File level system imaging
- Wake on LAN for imaging
- Preconfigured for PXE boot of clients
- Images can be customized - target device changed, file system size, file system type
Monitor Features
- Real time status monitoring for all nodes, CPU and Network
- Scrolling, scalable graphs
- View all nodes or a subset you are interested in
Scripting Features
- Run scripts across the cluster or on select nodes without a client agent
- Connects via a user selected protocol with secure authentication
- Command line or GUI interface
- Can be incorporated into external scripts
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Added: 2007-04-15 License: GPL (GNU General Public License) Price:
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BBCD - Bootable Cluster CD 2.2.1c

BBCD - Bootable Cluster CD 2.2.1c


The BCCD was created to facilitate instruction of parallel computing aspects and paradigms. more>>
BCCD - Bootable Cluster CD was created to facilitate instruction of parallel computing aspects and paradigms. Part of the difficulty instructors face is lack of dedicated resources to explore distributed computing aspects lack of time to preconfigure and test the supporting environment.

The BCCD image addresses this problem by providing a non-destructive overlay way to run a full-fledged parallel computing environment on just about any workstation-class system...Were happy to say that this now includes the MAC too!

The BCCD does share similarities with a few diskless solutions for clustering, such as the Warewulf project, the thin-OSCAR approach, Cluster Knoppix (only an openMosix system, no MPI/LAM/PVM build tools, ...), and so on. This is definitely the trend in HPC. But the main differences are that the BCCD will always fit in your pocket, be highly customizable for specific institutions needs, and will always be geared toward education and not dedicated clusters.

The "gar" build system also sets the BCCD apart from other projects. "gar" is a mix between BSDs "ports" system, Linux from scratch, and gentoo Linux. With gar, you can build an entire BCCD image from net-fetched sources in about two hours (assuming you have a primed ccache!).

The BCCD is also distinctly different from NPACI-Rocks, OSCAR, Cluster in a box or other type of mass-imaging clustering project for two reasons:

1. Its a non-destructive overlay on top of the current hardware. Once a system is rebooted, it reverts back to its original state. It is intended to be booted "over top" of a currently-configured Windows/Linux/BSD/etc. system.
2. Its focus in on educational aspects of High-Performance Computing (HPC) instead of the HPC core. Students will have a much better appreciation and understanding of how to tweak an MTU setting or wire the topology across a cluster if they understand how a distributed computation is laid out! Emphasis is placed upon building, configuring, and running distributed applications.
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Added: 2006-03-26 License: GPL (GNU General Public License) Price:
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Solaris packaging tools 1.2.1

Solaris packaging tools 1.2.1


PkgTools are a set of utilities which are used to aid in the building of native Solaris packages. more>>
PkgTools are a set of utilities which are used to aid in the building of native Solaris packages. There are five separate utilities which are used to build packages, prepare a chroot() environment to install software into prior to building a package, copy package control scripts into place, a tool to aid in the starting of new projects, and a tool to check that packages are installed correctly.

Currently there are four tools in this set:

build-pkg
This is used to actually build the Solaris package, calling chroot-install if required.
chroot-install
A utility which creates an environment suitable for calling chroot() on and allowing the user to install software into it.
proj-template
A utility which asks the user questions and then copies files and directories from a specified template directory and performs macro expansion on them. This is designed to aid in the initial setup of the home directory of a new project.
simple-proj
A very similar utility to proj-template. However it does not ask questions and only deals with the setting up of a simple InstallPackage. This is useful when dealing with 3rd party software which just needs to have a number of package control scripts put into the package.
check-pkg
A utility which can be used to check to see if packages are installed correctly. It can also be given a pathname to check on which packages said pathname is a part of.

It should be noted that simple-proj is really proj-template wearing a different hat.
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Added: 2005-11-18 License: BSD License Price:
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MySQL High Availability clustering Alpha-0.7

MySQL High Availability clustering Alpha-0.7


MySQL High Availability clustering is a set of scripts and programs that provide a high availability database cluster. more>>
MySQL High Availability clustering is a set of scripts and programs that provide a high availability database cluster using MySQL replication.
MySQL High Availability clustering is transparent to client applications, as the cluster uses a shared logical IP to provide the service.
Enhancements:
- References have been changed from MASTER_NODE to CLUSTER_IP in takeover, failover, and slave_routine, when it was appropiate.
- This release introduces changes in compat.sh, several main cluster files, and the installation documentation, according to bug reports 1707251 and 1707212.
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Added: 2007-05-19 License: GPL (GNU General Public License) Price:
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