structural models
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lx_lib structural memory library 20060226-1
lx_lib handles memory allocations as structures, keeping important information such as the remaining allocated space. more>>
lx_lib handles memory allocations as structures, keeping important information such as the remaining allocated space and the length of the used string internal to each variable (or descriptor).
Much of it was initially inspired by Dan Bernsteins stralloc library, but the two are not compatible, nor has there ever been any intention to make them compatible.
Main features:
- strings need not be scanned to determine their length
- the amount of allocated string remaining is easily determined
- promotes more secure programming practices
- if used correctly, lx_lib can offer a significant speed increase over traditional methods
- easy-to-use methods for manipulating strings
- generic descriptor support for buffered i/o
- generic descriptors enable fast scanning of input for specific characters (e.g. a newline)
Enhancements:
- Bits of the lx_map() interface have been updated for use with the 20060228-1 release of libnaw.
<<lessMuch of it was initially inspired by Dan Bernsteins stralloc library, but the two are not compatible, nor has there ever been any intention to make them compatible.
Main features:
- strings need not be scanned to determine their length
- the amount of allocated string remaining is easily determined
- promotes more secure programming practices
- if used correctly, lx_lib can offer a significant speed increase over traditional methods
- easy-to-use methods for manipulating strings
- generic descriptor support for buffered i/o
- generic descriptors enable fast scanning of input for specific characters (e.g. a newline)
Enhancements:
- Bits of the lx_map() interface have been updated for use with the 20060228-1 release of libnaw.
Download (0.024MB)
Added: 2006-04-13 License: GPL (GNU General Public License) Price:
1292 downloads
Misfit Model 3D 1.3.5
Misfit Model 3D is an OpenGL-based 3D model editor. more>>
Misfit Model 3D is an OpenGL-based 3D model editor that works with triangle-based models. Misfit Model 3D supports multi-level undo, skeletal animations, simple texturing, scripting, command-line batch processing, and a plugin system for adding new model and image filters.
Complete online help is included. It is designed to be easy to use and easy to extend with plugins and scripts.
Misfit Model 3D was written and tested on Linux (2.4 and 2.6 kernels) and has been compiled and tested on most major Linux distributions.
It is not endian-safe so it is unlikely to run on non-x86 hardware platforms--this will probably not change soon unless I get requests for a version thats usable on big-endian archs.
Enhancements:
- The menus have been re-organized. There is a new command to make normals face outward. The texture coordinate window now has a rotate tool. Material support for COB has been improved. Many animation bugs have been fixed. A "File | Export" command has been added to indicate which formats have less reliable write support.
<<lessComplete online help is included. It is designed to be easy to use and easy to extend with plugins and scripts.
Misfit Model 3D was written and tested on Linux (2.4 and 2.6 kernels) and has been compiled and tested on most major Linux distributions.
It is not endian-safe so it is unlikely to run on non-x86 hardware platforms--this will probably not change soon unless I get requests for a version thats usable on big-endian archs.
Enhancements:
- The menus have been re-organized. There is a new command to make normals face outward. The texture coordinate window now has a rotate tool. Material support for COB has been improved. Many animation bugs have been fixed. A "File | Export" command has been added to indicate which formats have less reliable write support.
Download (0.71MB)
Added: 2007-07-16 License: GPL (GNU General Public License) Price:
832 downloads
Test::Struct 0.01
Test::Struct is a Perl extension for testing for structural equivelence. more>>
Test::Struct is a Perl extension for testing for structural equivelence.
SYNOPSIS
use Test::Struct;
deep_eq($hairy_struct,$expected,Hairy structural test);
is($x,$y); # and everything else Test::More has to offer!
Test::Struct is used for doing deep structural comparisons of two objects. The module contains only one subrotuine which is intended to be used as a mix-in with other more generic Test::Builder derived modules like Test::More or Test::Simple. The code normally uses Scalar::Util for inspecting the data, but it will also use additional fine tuned comparison tools from Data::Dump::Streamer if they are available.
deep_eq($got,$expected,$name)
Does a deep level comparison of two objects. It traverses the two structures in parallel checking as many attributes as it can for differences. If the objects differ it will output a diagnostic message containing a list of the differences it encountered before it finished the comparison. Some types of mismatch prevent further comparison so the list may not be exhaustive.
The intention of this routine is that it will pass the test only if $got is functionally identical to $expected. However, at current time there are some data types it does not handle properly, such as CODE refs.
<<lessSYNOPSIS
use Test::Struct;
deep_eq($hairy_struct,$expected,Hairy structural test);
is($x,$y); # and everything else Test::More has to offer!
Test::Struct is used for doing deep structural comparisons of two objects. The module contains only one subrotuine which is intended to be used as a mix-in with other more generic Test::Builder derived modules like Test::More or Test::Simple. The code normally uses Scalar::Util for inspecting the data, but it will also use additional fine tuned comparison tools from Data::Dump::Streamer if they are available.
deep_eq($got,$expected,$name)
Does a deep level comparison of two objects. It traverses the two structures in parallel checking as many attributes as it can for differences. If the objects differ it will output a diagnostic message containing a list of the differences it encountered before it finished the comparison. Some types of mismatch prevent further comparison so the list may not be exhaustive.
The intention of this routine is that it will pass the test only if $got is functionally identical to $expected. However, at current time there are some data types it does not handle properly, such as CODE refs.
Download (0.005MB)
Added: 2006-12-01 License: Perl Artistic License Price:
1057 downloads
Vertex 3D Model Assembler 0.1.15
Vertex 3D Model Assembler project is a polygon-based live-end modeller. more>>
Vertex 3D Model Assembler project is a polygon-based live-end modeller.
The Vertex 3D Model Assembler is a 3D modeller geared towards making high performance models for games and other live-end requirements.
It uses the V3D format to maximize efficiency with OpenGL rendering, and can view/edit any V3D hybrid data.
<<lessThe Vertex 3D Model Assembler is a 3D modeller geared towards making high performance models for games and other live-end requirements.
It uses the V3D format to maximize efficiency with OpenGL rendering, and can view/edit any V3D hybrid data.
Download (1.1MB)
Added: 2006-11-06 License: GPL (GNU General Public License) Price:
1102 downloads
SharpConstruct 0.12 RC3
SharpConstruct is an OpenGL graphics application that supports real-time sculpting of polygon meshes. more>>
SharpConstruct project is a 3D modeling program designed to paint depth on to polygon models in real-time. Unlike traditional modeling programs, SharpConstruct makes it easy to quickly model organic shapes.
There is no need to even look at a wireframe (unless you want to). Instead, the model is manipulated much like clay -- push or pull an area, smooth it, make a hollow or a hill.
The entire process is both simple and organic; you wont need years of modelling experience to create detailed models in SharpConstruct.
SharpConstruct is licensed under the GNU General Public License; all the libraries it uses are also Free Software.
Enhancements:
- This release makes saving more reliable and fixes a startup crash.
<<lessThere is no need to even look at a wireframe (unless you want to). Instead, the model is manipulated much like clay -- push or pull an area, smooth it, make a hollow or a hill.
The entire process is both simple and organic; you wont need years of modelling experience to create detailed models in SharpConstruct.
SharpConstruct is licensed under the GNU General Public License; all the libraries it uses are also Free Software.
Enhancements:
- This release makes saving more reliable and fixes a startup crash.
Download (0.32MB)
Added: 2006-05-19 License: GPL (GNU General Public License) Price:
1259 downloads
Quantity Modeling Language 0.1
QML (Quantity Modeling Language) is a thing-based language for scientific and mathematical data modeling. more>>
QML (Quantity Modeling Language) is a "thing"-based language for scientific and mathematical data modeling.
Each "thing" is a quantity which may be associated with either a structure or physical phenomena.
Quantities, in turn, may hold other Quantities or values (numbers or strings). Higher-level data models, which associate or define meanings to various quantities (such as velocity or position), can be built from QML quantities.
The higher-level data model (XML) schema that inherits from QML may be understood, and its instance documents may be parsed into QML documents and objects by the QMLReader.
Enhancements:
- This release adds partial Xerces2 DOM support, and works with Java 1.4 and Java 1.5 (no JAXP DocumentBuilder/Factory support currently).
- The test procedure is a little less chatty.
- Support has been added for testing either/both Crimson/Xerces DOM support.
- (Note: Crimson support only works with Java 1.4, as Java 1.5 interfaces have DOM lvl 2 and 3, which crimson doesnt support).
- This release adds compilerargs, and better build support for different configurations to build.xml.
<<lessEach "thing" is a quantity which may be associated with either a structure or physical phenomena.
Quantities, in turn, may hold other Quantities or values (numbers or strings). Higher-level data models, which associate or define meanings to various quantities (such as velocity or position), can be built from QML quantities.
The higher-level data model (XML) schema that inherits from QML may be understood, and its instance documents may be parsed into QML documents and objects by the QMLReader.
Enhancements:
- This release adds partial Xerces2 DOM support, and works with Java 1.4 and Java 1.5 (no JAXP DocumentBuilder/Factory support currently).
- The test procedure is a little less chatty.
- Support has been added for testing either/both Crimson/Xerces DOM support.
- (Note: Crimson support only works with Java 1.4, as Java 1.5 interfaces have DOM lvl 2 and 3, which crimson doesnt support).
- This release adds compilerargs, and better build support for different configurations to build.xml.
Download (0.16MB)
Added: 2005-11-10 License: Public Domain Price:
1443 downloads
Spherical Harmonics Generator 0.0.14
Spherical Harmonics Generator provides an OpenGL-based interface to spherical harmonics. more>>
Spherical Harmonics Generator provides an OpenGL-based interface to spherical harmonics.
Spherical Harmonics Generator is a useful visualization tool in chemistry and physics courses, especially when explaining orbitals and wave function components. Models are fully zoomable and dragable. Parameters can be chosen from a menu at runtime.
<<lessSpherical Harmonics Generator is a useful visualization tool in chemistry and physics courses, especially when explaining orbitals and wave function components. Models are fully zoomable and dragable. Parameters can be chosen from a menu at runtime.
Download (0.010MB)
Added: 2006-04-13 License: GPL (GNU General Public License) Price:
747 downloads
TBFirewall 3.1
TBFirewall provides a front-end for ipchains or iptables. more>>
TBFirewall provides a front-end for ipchains or iptables.
TBFirewall is a front-end created to control firewall rules. Its config files are constructed in the form of tables.
TBFirewall is designed to connect one or more local networks to another, forming an internetwork, but it can also run without problem in other network models.
<<lessTBFirewall is a front-end created to control firewall rules. Its config files are constructed in the form of tables.
TBFirewall is designed to connect one or more local networks to another, forming an internetwork, but it can also run without problem in other network models.
Download (0.036MB)
Added: 2007-04-10 License: GPL (GNU General Public License) Price:
927 downloads
RailRoad 0.4.0
RailRoad is a class diagram generator for Ruby on Rails applications. more>>
RailRoad is a class diagram generator for Ruby on Rails applications. The project produces diagrams of controllers and models as DOT graphs.
Enhancements:
- Diagram generation was made more flexible for large/complex systems.
- Error handling was improved.
<<lessEnhancements:
- Diagram generation was made more flexible for large/complex systems.
- Error handling was improved.
Download (0.017MB)
Added: 2007-05-01 License: GPL (GNU General Public License) Price:
911 downloads
JSBSim Flight Dynamics Model 0.9.13
JSBSim is an open source flight dynamics model. more>>
JSBSim Flight Dynamics Model is an open source flight dynamics model (FDM) that compiles and runs under many operating systems, including Linux, Apple Macintosh, Microsoft Windows, Linux, IRIX, Cygwin (Unix on Windows), etc.
The FDM is essentially the physics/math model that defines the movement of an aircraft under the forces and moments applied to it using the various control mechanisms and from the forces of nature.
JSBSim has no native graphics. It can be run by itself as a standalone program, taking input from a script file and various aircraft configuration files; or, it can be run as an integrated part of a larger flight simulator implementation that includes a visual system.
The most notable example of the use of JSBSim is currently seen in the open source FlightGear simulator. JSBSim models the aerodynamic forces and moments by the classic coefficient buildup method.
JSBSim has seen the growth of a fairly large user base, with some of the more notable projects (of which I am aware) described on the Users page.
Main features:
- Fully configurable flight control system, aerodynamics, propulsion, landing gear arrangement, etc. through XML-based text file format.
- Rotational earth effects on the equations of motion (coriolis and centrifugal acceleration modeled).
- Configurable data output formats to screen, file, socket, or any combination of those.
Enhancements:
- This release includes new options for the standalone JSBSim executable, including improved real-time capability.
- This release also includes experimental (but tested) logic to reduce ground reactions jitter while on the ground.
<<lessThe FDM is essentially the physics/math model that defines the movement of an aircraft under the forces and moments applied to it using the various control mechanisms and from the forces of nature.
JSBSim has no native graphics. It can be run by itself as a standalone program, taking input from a script file and various aircraft configuration files; or, it can be run as an integrated part of a larger flight simulator implementation that includes a visual system.
The most notable example of the use of JSBSim is currently seen in the open source FlightGear simulator. JSBSim models the aerodynamic forces and moments by the classic coefficient buildup method.
JSBSim has seen the growth of a fairly large user base, with some of the more notable projects (of which I am aware) described on the Users page.
Main features:
- Fully configurable flight control system, aerodynamics, propulsion, landing gear arrangement, etc. through XML-based text file format.
- Rotational earth effects on the equations of motion (coriolis and centrifugal acceleration modeled).
- Configurable data output formats to screen, file, socket, or any combination of those.
Enhancements:
- This release includes new options for the standalone JSBSim executable, including improved real-time capability.
- This release also includes experimental (but tested) logic to reduce ground reactions jitter while on the ground.
Download (0.95MB)
Added: 2007-01-21 License: GPL (GNU General Public License) Price:
604 downloads
The Wurld 3D Engine 0.4
The Wurld 3D Engine is yet another 3D gaming engine. more>>
The Wurld 3D Engine is yet another 3D gaming engine. It is light, fast, has minimal external requirements, and is still very immature. The project is Python scriptable, including support for generating models using 3D turtle graphics.
<<less Download (0.88MB)
Added: 2007-06-11 License: BSD License Price:
871 downloads
VESTA 1.0b
VESTA software is a 3D visualization program for structural models and 3D pixel data such as electron/nuclear densities. more>> <<less
Download (1.7MB)
Added: 2007-07-16 License: Free To Use But Restricted Price:
834 downloads
StrBio 1.0
StrBio is a set of Java classes useful for development of software for computational structural biology research. more>>
StrBio is a set of Java classes and libraries useful for development of software for computational structural biology research.
They are licenced under the LGPL.
he strbio.org classes are the basis for several published research projects, including the Pred2ary secondary structure prediction program and the ASTRAL database of protein domain sequences.
The most interesting structural biology applications included are:
Pred2ary protein secondary structure prediction
JThread protein fold prediction
ConvertProtein for interconversion of protein file formats (FASTA, PDB, MSF, ALN, CASP, DSSP, HSSP, YAPF)
Filters to exchange data with commonly used molecular biology applications (e.g., BLAST, MinArea, MODELLER)
MakeRAF tool to create the Rapid Access Format sequence maps for the ASTRAL database.
Other more general-purpose functionality that is included:
Neural network library, including Scaled Conjugate Gradient or Steepest Descent optimization
Hooke and Jeeves derivative-free global optimization algorithm
Misc mathematical objects and algorithms (vectors, matrices, etc)
Efficient string formatting using Printf-based syntax (printf, atoi, atof, etc.)
<<lessThey are licenced under the LGPL.
he strbio.org classes are the basis for several published research projects, including the Pred2ary secondary structure prediction program and the ASTRAL database of protein domain sequences.
The most interesting structural biology applications included are:
Pred2ary protein secondary structure prediction
JThread protein fold prediction
ConvertProtein for interconversion of protein file formats (FASTA, PDB, MSF, ALN, CASP, DSSP, HSSP, YAPF)
Filters to exchange data with commonly used molecular biology applications (e.g., BLAST, MinArea, MODELLER)
MakeRAF tool to create the Rapid Access Format sequence maps for the ASTRAL database.
Other more general-purpose functionality that is included:
Neural network library, including Scaled Conjugate Gradient or Steepest Descent optimization
Hooke and Jeeves derivative-free global optimization algorithm
Misc mathematical objects and algorithms (vectors, matrices, etc)
Efficient string formatting using Printf-based syntax (printf, atoi, atof, etc.)
Download (12.7MB)
Added: 2005-11-14 License: LGPL (GNU Lesser General Public License) Price:
1440 downloads
Gretl 1.6.5
Gretl is a cross-platform software package for econometric analysis, written in the C programming language. more>>
Gretl is a cross-platform software package for econometric analysis, written in the C programming language. It is is free, open-source software.
You may redistribute it and/or modify it under the terms of the GNU General Public License (GPL) as published by the Free Software Foundation.
Main features:
- Easy intuitive interface (now in French, Italian, Spanish, Polish and German as well as English)
- A wide variety of least-squares based estimators, including two-stage least squares and nonlinear least squares
- Single commands to launch things like augmented Dickey-Fuller test, Chow test for structural stability, Vector Autoregressions, ARMA estimation
- Output models as LaTeX files, in tabular or equation format
- Integrated scripting language: enter commands either via the gui or via script
- Command loop structure for Monte Carlo simulations and iterative estimation procedures
- GUI controller for fine-tuning Gnuplot graphs
- Link to GNU R for further data analysis
<<lessYou may redistribute it and/or modify it under the terms of the GNU General Public License (GPL) as published by the Free Software Foundation.
Main features:
- Easy intuitive interface (now in French, Italian, Spanish, Polish and German as well as English)
- A wide variety of least-squares based estimators, including two-stage least squares and nonlinear least squares
- Single commands to launch things like augmented Dickey-Fuller test, Chow test for structural stability, Vector Autoregressions, ARMA estimation
- Output models as LaTeX files, in tabular or equation format
- Integrated scripting language: enter commands either via the gui or via script
- Command loop structure for Monte Carlo simulations and iterative estimation procedures
- GUI controller for fine-tuning Gnuplot graphs
- Link to GNU R for further data analysis
Download (3.0MB)
Added: 2007-05-17 License: GPL (GNU General Public License) Price:
897 downloads
Generic Eclipse Modeling System 2.0.5_01 / 3.0 Beta 2
The Generic Eclipse Modeling System (GEMS) is a MDD tool for Eclipse that allows for the rapid development of Draw2D plugins. more>>
The Generic Eclipse Modeling System (GEMS) is a MDD tool for Eclipse that allows for the rapid development of Draw2D plugins.
Developers specify the rules for a domain language using a metamodel and the tool generates a diagram editor plugin that enforces the rules from the metamodel.
Interpreters can then be written to traverse the model and generate code, perform analyses, or execute the model.
Whats New in 2.0.5_01 Stable Release:
- This release contains fixes to minor bugs present in 2.0.5.
<<lessDevelopers specify the rules for a domain language using a metamodel and the tool generates a diagram editor plugin that enforces the rules from the metamodel.
Interpreters can then be written to traverse the model and generate code, perform analyses, or execute the model.
Whats New in 2.0.5_01 Stable Release:
- This release contains fixes to minor bugs present in 2.0.5.
Download (2.7MB)
Added: 2007-08-19 License: Other/Proprietary License Price:
799 downloads
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