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AR-Smileys 1.9b

AR-Smileys 1.9b


AR-Smileys package contains some msn-compliant icons for Pidgin (Gaim). more>>
AR-Smileys package contains some msn-compliant icons for Pidgin (Gaim).
This set include only the smileys Im using to chat with friends. No more, no less. Im sorry, if you want other icons, but right now them arent aviable... but I think ill publish soon an extended pack, which contains other smileys, msn compatible, user requested, iditic (er... more idiotic) ones and so on.
The set is made with The GIMP, but for the relase 2.0 ill convert them in SVG. The problem is that on inkscape layers arent easily managed... oh well, even GIMP isnt wonderful when talking about layers managing (source xcf for these smileys have about 200 layers, and isnt easy to manage), but inkscape is even worster. So ive to found a way to handle them better. Maybe ill put a new version of smile-generator online, so you can compose your smileys as you want.
License: you can actually use the set for any non-commercial purpose: you can modify and redistribute the set with this license (i.e. your derived word should be free for non-commercial use). And if you use my set, you should link this website somewhere where you use them.
Anyway, you can find a more detailed license in the package.
Enhancements:
- The version 1.9b is the same of 1.9, but adds the file "emoticons.xml" for kopete users.
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Download (0.15MB)
Added: 2007-04-30 License: Other/Proprietary License Price:
912 downloads
Breathe and Smile 1.0

Breathe and Smile 1.0


Breathe and Smile is a GDM theme. more>>
Breathe and Smile is a GDM theme created as a modification of savagehps theme:
http://www.gnome-look.org/content/show.php/Still+alive+sunshine+GDM+Theme?content=52687

Original login elements work from pyros:
http://www.gnome-look.org/content/show.php/Sunergos+Blue+GDM?content=41562

All I did was move some elements around to compensate for the background.

The background image is from Neoyume: http://neoyume.deviantart.com

All credits go to the original authors.

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Download (0.65MB)
Added: 2007-05-04 License: GPL (GNU General Public License) Price:
905 downloads
Chemistry::SQL 0.01

Chemistry::SQL 0.01


Chemistry::SQL is an access database functions module. more>>
Chemistry::SQL is an access database functions module.

SYNOPSIS

use strict;
use Chemistry::SQL;
use Chemistry::Artificial::SQL;

my $db_name = $ARGV[0];
my $file = $ARGV[1];

my $db1 = Chemistry::SQL::new(db_host=>"127.0.0.1",db_user=>"root",db_port=>"3306",db_pwd=>"",
db_name=>$db_name,db_driver=>"mysql");
if ($db1->db_exist)
{ $db1->connect_db;
$db1->del_tables;
$db1->create_tables_mysql;
$db1->inscomp_from_file("$file");
}
else
{
$db1->create_db;
$db1->connect_db;
$db1->create_tables_mysql;
$db1->inscomp_from_file("$file");
}
# Reaction Insertion

my $qart = Chemistry::Artificial::SQL::new($db1);
my $qr =$qart->q_reaccion(C=CC=C.C=C>>C1=CCCCC1,smiles);
$db1->reactionsert($qr,"","0");

This package provides the necessary functions to interact with the database. The methods implemented in this module are oriented to give users control of the database without knowing how to use SQL queries.

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Download (0.014MB)
Added: 2006-07-31 License: Perl Artistic License Price:
1185 downloads
kfile_chemical 0.12

kfile_chemical 0.12


kfile_chemical is a set of kfile plugins for chemistry documents. more>>
kfile_chemical is a set of kfile plugins for chemistry documents. It has support for XYZ, PDB, MDL mol/sd, Mol2, CML, ShelX, SMILES and CIF files.
kfile_chemical is currently in alpha stage: 1.0 will be alpha too; it will be feature complete, i.e. proving plugins kfile plugins for all files mentioned at the official chemical mime page (and a few more).
Version 2.0 will be beta, and feature a more organized set of extracted pieces of information.
Version 3.0 will be beta too, and mime magic, which is a method to detect the mime type not from the file extension, but from the content.
Verion 4.0 will be the first stable release and is aimed to be ready with Kubuntu 6.04 and KDE 4.0.
Enhancements:
- This release adds support for chemical-mime-data, thus synchronizing with the main MIME type library for chemical data.
- It also fixes QChar / QString conversion, the FSF address, and the contact email address.
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Download (0.10MB)
Added: 2006-07-10 License: GPL (GNU General Public License) Price:
1201 downloads
jGossip 1.0

jGossip 1.0


jGossip is simple and powerful forum (message board) software implemented on J2EE platform. more>>
jGossip is simple and powerful forum (message board) software implemented on J2EE platform.It is using Struts framework.

Features of jgossip:

P planned
I implemented
R - released
D development in progress
C - cancelled
F - deferred

(R) Different environments.
Tested platforms include: Apache with Tomcat 4.1 , Jetty 4.2,SunOne 7.0
(R) Fully validated user input
(R) Powerful and extensive authorisation system
(R) Auto Login for easy login of users
(R) Strong encryption to keep passwords safe in the database
(R) Support for both cookie and URI-based sessions
(R) Unlimited forums can be organised into as many categories as you like
(R) New posts flag to identify new messages
(D) Private forums and those only for specified user groups
(R) Powerful search facility
(P) Automatic URL linking in posts
(R) Support of standard and extended BBCode tags in posts
(P) Polls
(R) Email notification of replies to topics
(R) Powerful topic subscription capability
(R) Emotions(Smiles) in posts
(P) Popular Discussions (Users can view the most popular topics from the main forum page).
(P) User Defined Bookmark for topics
(D) Internationalization (i18n) Support
(R) Forum, user and group permission management
(R) Moderation, so you can delegate the content moderation to a specific user
(R) Audit Logging in to database. Browse of audit logs by web interface.
(D) Control forum access to specified user groups
(R) Unlimited members
(R) Personal profile creation
(R) Post counting ranks for users
(P) Email-like private messaging system
(R) Supports avatars
(R) File attachment with posts
(R) Delete/move/lock/unlock of topics
(R) Delete single posts
(P) Move of posts
(P) Topic splitting
(P) Word censoring
(R) Extensive ban management, ban by email address, username or single/multiple IP address or hostname
(R) IP tracking of posts and posters
(R) Mass emailing of groups and users by the administrator
(P) Multiple styles available for the user to choose from
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Download (5.8MB)
Added: 2006-06-24 License: MPL (Mozilla Public License) Price:
1218 downloads
WWW::Scraper::Google 3.05

WWW::Scraper::Google 3.05


WWW::Scraper::Google scrapes www.Google.com. more>>
WWW::Scraper::Google scrapes www.Google.com.

Caveat Kleptor

Please note that using the Google Scraper module (may) be a violation of Googles "Terms of Service", of which your humble author has been repeatedly reminded. The TOS is not as easy to locate as some of these correspondents have suggested (without a smile), but you can find the TOS at http://www.google.com/terms_of_service.html

Briefly, the relevant part is the "No Automated Querying" section. Its a kind of "do as I say, not as I do" dictum. Your author has tried to divine exactly what it means. On the surface its pretty clear, but if you follow the thread you will realize that it doesnt lead to a place any of us want to be. However, Google Incs desire is clear enough. They do not want to be *abused* for the exclusive benefit of someone else.

Scraper is not a tool well suited for this kind of abuse. It is designed to be generally configurable and, as such, it is not particularly efficient. It obeys the "robot.txt" rules published by the web-server. It would require some effort on a users part to cirumvent this feature. The Google.pm does not do a "meta-search" on Google. Even if your humble author removed Google.pm from the Scraper suite, it would be trivially easy for someone to build a Google module for Scraper (their format is very simple compared to others).

I believe that Google Inc. understands a little interloping (in moderation) is beneficial to all. I should note that Google Inc. has not notified your author of any concern on their part. This has been done by third parties who, for whatever reasons of their own, feel it necessary to interject themselves in others disputes, even when no such dispute exists.

Keep in mind that this is Googles livelihood. Should your use of Scraper be your hobby, or even part of your livelihood, remember it never helps to hit someone where they live. They will defend themselves to the death (even if that death is yours).
Scraper is a handy little tool for getting to stuff you cant get to otherwise. Lets keep it that way!

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Download (0.10MB)
Added: 2006-11-23 License: Perl Artistic License Price:
1075 downloads
++Skype library 1.10

++Skype library 1.10


++Skype is a C++ library for skype add-on platform independent software development. more>>
++Skype is a C++ library for skype add-on platform independent software development.
++Skype library is platform independent, easy to use, and easy to extend because of the flexible library design, inspired by modern C++ design ideas.
Performance is one of the goals: only compile-time polymorphism is used. The library license allows you to develop freely redistributed applications without any fee.
Main features:
- Platform independent (Now only linux and windows platforms are supported, but we are looking into the future! Smiling);
- Easy to use;
- Easy to extend because of the flexible library design, inspired by modern C++ design ideas;
- Perfomance was on of our goals - only compile-time polymorphism is used;
- Library license allows you to develop freely redistributed applications without any fee;
- Open source.
Enhancements:
- X11 Protocol support is included in the Linux implementation of the library.
- D-BUS library is no longer a requirement.
- You can remote control Skype via the X11 protocol.
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Download (0.063MB)
Added: 2006-10-23 License: GPL (GNU General Public License) Price:
644 downloads
Vigyaan 1.0

Vigyaan 1.0


Vigyaan is a Linux live CD for computational biology and chemistry. more>>
Vigyaan is an electronic workbench for bioinformatics, computational biology and computational chemistry.
It has been designed to meet the needs of both beginners and experts. VigyaanCD is a live Linux CD containing all the required software to boot the computer with ready to use modeling software. VigyaanCD v0.1 is based on KNOPPIX v3.3.
At present the following ready to use software comes on VigyaanCD: Artemis, Bioperl, BLAST (NCBI-tools), ClustalX, Cn3D, EMBOSS tools, Garlic, GROMACS, Ghemical, GNU R, Gnuplot, GIMP, ImageMagick, Jmol, MPQC, NJPlot, Open Babel, Octave, PSI3, PyMOL, Rasmol, Raster3D, SMILE, TINKER, XDrawChem, Xmgr and Xfig. GNU C/C++/Fortran compilers and additional Linux tools (such as ps2pdf) are also available.
VigyaanCD also provides tools required to compile and install other applications (from source). Therefore, making testing of Linux applications possible on computers with other OS.
Enhancements:
- This release is based on KNOPPIX 3.7.
- Most software packages have been updated and new applications added.
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Download (638MB)
Added: 2005-09-07 License: Freely Distributable Price:
1509 downloads
BKchem 0.12.0_02

BKchem 0.12.0_02


BKchem is a chemical drawing program. more>>
BKchem is a free chemical drawing program. BKchem was concieved and written by Beda Kosata.
BKchem is written in Python, an interpreted and very nice programming language.
Main features:
Drawing
- bond-by-bond drawing
- bond lenght and angle restrictions to assist with the drawing
- ready to use templates of common rings
- ability to expand common groups from abbreviated to structural form
- radicals, charges...
- arrows
- rich text
- color support
- simple vector graphics (rectangles, circles, polygons etc.)
Editing
- unlimited undo and redo capabilities
- aligning
- scaling
- rotation (2D, 3D)
- aligning of molecules so that particular bond is horizontal/vertical
- rotation of molecular fragments around bonds (conformation changes)
- definition of personal preferred drawing style (bond lenghts, widths, colors...)
Export
- full export to SVG (native data are transparently embedded into SVG file)
- full export to OpenOffice Draw format
- full export to Encapsulated PostScript
- basic support for both CML1 and CML2
- Molfiles
- generation of SMILES
Import
- basic support for both CML1 and CML2
- Molfiles
- SMILES (subset)
- INChI (subset)
Other features
- localization support (currently English, French, Czech and Polish translations are available)
- native format is XML based
- validity checking of drawn structures
Whats New in 0.11.6 Stable Release:
- In this release, two major bugs were fixed: one in the German translation (causing a crash when a file was saved) and one in the OpenOffice export plugin.
- A few other minor bugs were also fixed.
Whats New in 0.12.0_02 Development Release:
- This release fixes several bugs, most importantly incompatibility with Python 2.5.
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Download (0.69MB)
Added: 2007-04-04 License: GPL (GNU General Public License) Price:
934 downloads
JChemPaint 2.3.0

JChemPaint 2.3.0


JChemPaint is a 2D molecular structure editor. more>>
JChemPaint project is an editor for 2D molecular structures.
JChemPaint is intended to be complementary to Jmol, a visualisation and analysis tool for 3D molecular structures, started by Dan Gezelter at Notre Dame University, initator of the Open Science Project. and, like JChemPaint, developed by an international team of opensource programmers.
Main features:
- JChemPaint is open source OS. It is Free Software. We believe that scientific software, especially when its development was publically funded, should be free. As the GNU people put it: "``Free software is a matter of liberty, not price. To understand the concept, you should think of free speech, not free beer. ". Everyone can participate in the development of the program. Everyone can download and change the source code, provided that he makes the changes publicly available again, according to the GNU Lesser General Public License, LGPL. This ensures that the community can take advantage of any bugfix/enhancement made to the system.
- It also ensures that a scientist, who needs a standard piece of software like a structure editor as a helper application in her new program, does not have to reinvent the wheel over and over again because all the structure editors that have been written before are now proprietory software. If there is a free structure editor, she can focus on the real science.
- JChemPaint is not complete :-). Honestly, it can still use a lot of development (see below).
- Since JChemPaint is written in Java it runs on any computing platform and operating system for which a Java Virtual Machine (of version >= 2) has been implemented (like Linux, Windows 95/98/NT, Solaris, AIX and others).
- JChemPaint is avaiblable free of charge.
- JChemPaint is translated into several languages: Dutch, French, German and Polish.
Enhancements:
- This release is a build from the latest of CDK SVN.
- It adds InChI support and a SMILES entering field with memory.
- Many bugs were fixed, and the program should be faster too.
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Download (10MB)
Added: 2006-09-23 License: LGPL (GNU Lesser General Public License) Price:
1127 downloads
Kororaa Beta2-r1

Kororaa Beta2-r1


Kororaa project is a way of installing Gentoo Linux easily and quickly, similar to Gentoos more>>
Kororaa project is a way of installing Gentoo Linux easily and quickly, similar to Gentoos "Stage3 with GRP packages" install.

Whats different?

For Kororaa we wrote an install script to go along with our install method which takes care of most of the manual configuring required under the Gentoo method;

The Kororaa build is derived from Bob Ps Stage 1/3 install method;

Also, we have pre-defined a wide suite of KDE based (and now also Gnome based) applications for your use and designed the entire system specifically for these;

We have also added a large number tweaks and automations along the way to assist in the Kororaa experience.

Whats the point of it?

I must state that I adore the manual Gentoo way of installing. In fact, I swore against an installer for Gentoo for a long time and this stance has not really changed. What I wanted however was a way to quickly re-produce a desktop installation for multiple machines. I also wanted a tool that I could give to friends who liked the idea of Gentoo but complained about the "compile time". I dont think that missing out on the Gentoo experience because of "compile time" is valid and so I wanted a way to introduce my friends to Gentoo without having to build their systems myself.

I cannot more strongly recommend the Gentoo install method if you are serious about learning both Gentoo and GNU/Linux in general. I owe Gentoo a lot - I played with Redhat* back in 1998 (thanks to Andrew Tridgell) but then fell into "RPM hell" and went around from distro to distro in a mad seething rage of desperation. Then I came across Gentoo 1.1 and it was love at first install.

So, if youre someone who doesnt want to wait to get a nicely configured Gentoo system, is so afraid of the standard install method that its stopping you from trying Gentoo at all, or youre a lazy pig then this method is for you!

Note: You can use our stage3, portage snapshot and packages together with the standard Gentoo "Stage3 GRP" install if you want to try it that way too!

What else?

The Kororaa system comes pre-configured for a Pentium3. We chose Pentium3 because most people should have an SSE capable processor by now.

This means it will run on any P3 Coppermine core and later, including AMD Athlon-XP, Athlon64/Opteron, Sempron etc and Intel Pentium 4, Pentium M, Xeon etc.

Please note it will NOT work on a system without SSE support.

As of Beta2 however, we have also released an AMD64 version, which will run on any AMD 64bit cpu including Athlon64, Sempron64 and Opteron.

If you want more optimisation, you can easily re-build your system with all the current apps and configuration by changing your make.conf and rebuilding world.

Please note the system is currently BETA, a bit "hacky" and could destroy your harddrive or something even more nasty like bowed legs and a crooked smile.
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Download (352.6MB)
Added: 2006-03-19 License: GPL (GNU General Public License) Price:
1314 downloads
CAD::Drawing 0.26

CAD::Drawing 0.26


CAD::Drawing is a Perl module with methods to create, load, and save vector graphics. more>>
CAD::Drawing is a Perl module with methods to create, load, and save vector graphics.

SYNOPSIS

The primary intention of this module is to provide high-level operations for creating, loading, saving and manipulating vector graphics without having to be overly concerned about smile floormats. As the code has seen more use, it has also drifted into a general purpose geometry API.

The syntax of this works something like the following:

A simple example of a (slightly misbehaved) file converter:

use CAD::Drawing;
$drw = CAD::Drawing->new;
$drw->load("file.dwg");
my %opts = (
layer => "smudge",
height => 5,
);
$drw->addtext([10, 2, 5], "Kilroy was here", %opts);
$drw->save("file.ps");

This is a very basic example, and will barely scratch the surface of this modules capabilities. See the details for each function below and in the documentation for the backend modules.

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Download (0.039MB)
Added: 2007-04-24 License: Perl Artistic License Price:
925 downloads
Open Babel 2.0.2 / 2.1.1

Open Babel 2.0.2 / 2.1.1


Open Babel is a cross-platform chemistry program and library designed to convert file formats. more>>
Open Babel project is designed to pick up where Babel left off, as a cross-platform program and library designed to interconvert between many file formats used in molecular modeling and computational chemistry.
Main features:
- A huge variety of common chemical file formats, including SDF/MOL, Mol2, PDB, SMILES, XYZ, CML... (details)
- Recognition of file type based on filename extension
- Chemical MIME support
- SMARTS matcher
- Flexible atom typer
- Flexible bond typer for perception of multiple bonds from atomic coordinates
- Gasteiger partial charge calculation
- Hydrogen addition and deletion
- Isotope support, calculation of average and exact masses
- Automatic feature perception (rings, bonds, hybridization, aromaticity)
- Multiple conformer storage within molecules
- Command line conversion for multiple molecules in one file
- Command line interface
- Bitvector class
- Vector and matrix transformations
- Molecular test suite
- Open-source/Free Software under the GNU General Public License
- Cross platform (Windows, Linux, Mac OS X, SGI, Solaris, Dreamcast...)
Version restrictions:
- Generate coordinates for SMILES strings. (Meaning all coordinates will be zero when converting from a SMILES string.)
- Handle 2D->3D conversion (or vice versa).
- Handle a variety of important file formats.
Whats New in 2.1.1 Development Release:
- Improved scripting support, including dictionary-support for OBGenericData in pybel, casting from OBUnitCell, etc. Improved access to OBRings from OBMol.GetSSSR().
- Added support for descriptors (e.g., PSA, logP) from scripting interfaces.
- Added support for reading all PDB records (beyond current atom and bond connections). Records not handled directly by Open Babel are added as key/value pairs through OBPairData.
- Added a new configure flag --with-pkglibdir to allow Linux package distributors to define version-specific directories for file format plugins.
- Fixed a bug which would not output chirality information for canonical SMILES with 3D files.
- Fixed problems with new line-ending code. Now correctly reads DOS and old Mac OS files with non-UNIX line endings.
- Correctly rejects SMILES with incorrect ring closures. Thanks to Craig James for the report.
- Fixed a crash when output to canonical SMILES.
- Fixed a crash when converting from SMILES to InChI.
- Fixed a crash when reading some PDB files on Windows.
- Fixed a crash when reading invalid MDL/SDF files.
- Fixed a bug which made it impossible to read some GAMESS files.
- Fixed a problem when reading ChemDraw CDX files on Mac OS X.
- A large number of additional fixes, including some rare crashes.
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Download (2.3MB)
Added: 2007-07-08 License: GPL (GNU General Public License) Price:
527 downloads
JOELib/JOELib2 2007-03-03

JOELib/JOELib2 2007-03-03


JOELib/JOELib2 is a Java-based chemoinformatics library. more>>
JOELib/JOELib2 is a platform independent open source computational chemistry package written in Java.
Main features:
- graph based structure to modify molecular structures
- classes for getting the aromatic flags for atoms and bonds
- classes for getting the hybridisation of atoms
- SMiles ARbitrary Target Specification (SMARTS) substructure search
- import and export filter for Simplified Molecular Input Line Entry System (SMILES)
- descriptor calculation classes
- base classes for reading and writing molecular file formats
- atom and bond properties classes (including import and export filter)
- Chemical Markup Language (CML)
- CACTVSs clear text format (CTX)
- POVRay export (including aromatic rings)
- Processes / External processes and process decision filters
Enhancements:
- joelib2/src/joelib2/molecule/BasicConformerMolecule.java Bugfix for non-defined stereochemistry, which will now be retrieved from 2D/3D conformations.
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Download (10.7MB)
Added: 2007-03-03 License: GPL (GNU General Public License) Price:
965 downloads
PHPX 3.5.15

PHPX 3.5.15


PHPX is a PHP CMS and portal. more>>
[COPYRIGHT=] Version 3 changed the way programming of PHPX was approached and introduced PHPX to Object Oriented programming (OOP). This allows PHPX 3 to be extremely flexiable, easy to modify, maintainable, and simple for the users.
PHPX is written in PHP, a popular web programming language. PHPX, like PHP itself, is open source. Meaning there are no fees, no contracts, and you can modify as much or as little as you want. Use it out of the box, or modify it as you need to create your own specilized web presence.
Main features:
- Amazingly Easy Installation
- Ability to run in secure mode utilizing SSL*
- Easy to understand Administration Interface
- Fully Documented for the Administrator that has questions
- 8 languages currently supported
- Customize Time zones automatically based on user profiles
- Fast page rendering even without expensive caching
- Template driven, so customize a layout/design or use themes
- All modules are fully integrated, one login does everything
- Cookie authentication for greater security and ease
- Encrypted passwords to keep your data safe
- User Customizable Homepages
- Integrated Ad Management System
- Integrated Google API search engine
- Free Support given on this site by the author and other PHPX users
- Totally Free
Enhancements:
- Added page menu administration functions
- Fixed Link function on page edit
- Added Image Add to base editor
- Added non-image insert (link) to editor
- Improved Forum Post & Topic Checking
- News Title to title bar in browser (Thanks maheshwaran)
- Added Forum Left Join, and removed intial post (Thanks Eames)
- Admin can control default user settings for 6 basic settings (Thanks why2k)
- Added arrows to news walking titles (Thanks Rebell)
- Integrated new GUI for backend editing
- Made the CREATE TABLE statements in the installation scripts backwards compatiable for MySQL 3.23 and 4.0
- Fixed Gallery Download in IE issue.
- Fixed user ban page.
- Fixed a Vox Background issue. (Thanks mkberda & DaBoss)
- Fixed a couple of bugs in the job posting module, and added internal posting abilities.
- Added smiles/words/html/xcode to Vox & Guestbook (Thanks Rebell)
- New Dutch Translation
- Added the ability to reset referrers and pageviews
- Fixed Tiny MCE from removing script tags (Thanks why2k)
- Fixed Tiny MCE from destroying PHP parsed pages
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Added: 2006-11-29 License: GPL (GNU General Public License) Price:
1061 downloads
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