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Single Marker Association 2.0

Single Marker Association 2.0


Single Marker Association is a simple tool that calculates the single marker association between individual SNP markers. more>>
Single Marker Association is a simple tool that calculates the single marker association between individual SNP markers and a case/control dichotomy.
Usage:
The tool reads two files as input, the first is a set of case and the second a case of control haplotypes. The format of the files is one line per haplotype, where the SNP data is represented as 0 or 1, separated by white-space.
- The tool outputs a list of statistics for each marker
- The marker number (from left to right in the input data)
- The frequency of the 0 allele for the cases file
- The chi-square contingency table statistics for the marker
- The CDF of the chi-square statistics
- The p-value of the statistics (1-CDF)
Installation:
The SMA tool is written in C++. It should compile on any Unix like system. To install, download the source code and unpack it (tar xzf sma-v.tar.gz, where v is the version number of sma), then run make in the subdirectory sma-v created during unpacking.
Enhancements:
- Support for (unphased) genotype data.
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Added: 2006-01-19 License: GPL (GNU General Public License) Price:
1373 downloads
XDCC Parser Single 1.1 Revision 1

XDCC Parser Single 1.1 Revision 1


XDCC Parser Single 1.1 Revision 1 offers you powerful Parse XDCC lists. XDCC Parser Single will search through the XDCC bots listings more>> <<less
Added: 2009-06-15 License: GPL v3 Price: FREE
15 downloads
single-honeypot 0.2-7

single-honeypot 0.2-7


Single-honeypot is a powerfull tool, for security interest about the estudies of techniques of breaking systems. more>>
single-honeypot simulates many services like SMTP, HTTP, POP3, shell, and FTP. It can show manydifferent faces, including those of Windows FTP systems, Windows SMTP systems, different Linux distributions, and some Posix distributions.
I wanted to register every service imaginable with the portmapper, but didnt like the idea of actually running the daemons necessary and relying on the firewall to keep the connections controllled (some dweebs voice in my ear kept saying, "defense in depth.") I was going to bang on the sources to portmapper and hardcode everything from /etc/rpc into there, but after I pulled the tarball down, I started reading and saw that pmap_dump and pmap_set would do it all. Cool. Thanks Wietse.
The fakerpc here is derived from RedHat Linux 7.1, Irix 5.3, and Solaris 8s /etc/rpc files, and then built to include lines for versions 1-4 of each rpc program, via both udp and tcp. Start portmapper as normal, but instead of firingup rpc programs, just execute:
"pmap_set < /usr/local/thp/fakerpc".
Theres a 1:1 chance that this will break your existing legit rpc services. If you are running rpc services on your firewall/hpot, you should go hang out with those non-IDS types above.
Enhancements:
- Changes: Pop3 target added and commands of the SMTP target has been added and modified
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Added: 2006-07-07 License: GPL (GNU General Public License) Price:
1209 downloads
Parallel Three-Dimensional Fast Fourier Transforms 2.1

Parallel Three-Dimensional Fast Fourier Transforms 2.1


Parallel Three-Dimensional Fast Fourier Transforms is a library for computational computing in a wide range of sciences. more>>
Parallel Three-Dimensional Fast Fourier Transforms, dubbed P3DFFT, is a library for computational computing in a wide range of sciences, such as physics, climatology, chemistry.
This project was developed at SDSC by Dmitry Pekurovsky as a product of a Strategic Applications Collaborations (SAC) project.
Main features:
- Parallel implementation with 2D data decomposition, overcoming an important limitation to scalability of other 3D FFT libraries implementing 1D, or slab, decomposition.
- Optimized for parallel communication and single-CPU performance.
- Built on top of well-optimized and flexible 1D FFT libraries.
Enhancements:
- Assorted minor bugfixes and code speedups.
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Added: 2007-06-07 License: GPL (GNU General Public License) Price:
869 downloads
Single Source information Server 0.1.9

Single Source information Server 0.1.9


Single Source information Server provides a set of applets for sharing information from a single source. more>>
Single Source information Server provides a set of applets for sharing information from a single source.
The Single Source Infomation Server is a suite of applets designed to share information from a single source, a set of MySQL tables, with as many other systems as possible, starting with PHP, Palm OS PDAs, LDAP, and WAP.
The first part of this project will create a set of PHP pages to edit the information inside a simple set of tables.
This will be the first bi-directional applet (DONE). Following on from there will the ability to export some of this data into a format that can be used by the file link feature in HotSync (DONE), a bi-directional PDA sync (DONE) and by an LDAP server applet, the ability to print single address labels onto a Dymo / CoStar label printer, print envelopes and create a mail-merge export for letters.
If we can work out or get the spec, we will write a QuickBooks timer export for the datebook, and allow import/export of vCal, iCal and vCards.
Enhancements:
- This release fixes a number of bugs and adds some new functionality, includine LDAP.
- After this release we will be making a major re-write to the coldsync conduits, so the next release will be an alpha release of Version 0.2
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Added: 2007-01-30 License: GPL (GNU General Public License) Price:
997 downloads
Slingshot 0.8.1p

Slingshot 0.8.1p


Slingshot is a two dimensional, turn based simulation-strategy game. more>>
Slingshot is a two dimensional, turn based simulation-strategy game set in the gravity fields of several planets. It is a highly addictive game, and never the same from round to round due to its randomly generated playing fields.

It is a deceptively simple game, the goal is to shoot the other spacecraft through the field of planets, but their gravity makes it tricky. The effects of the gravity mean that although its easy to learn how to play, and to enjoy playing, it could take a lifetime to thoroughly master.

In order to hit your opponent, you can rotate you ship to aim in any direction, and you can change the power with which your projectile is launched - the initial speed at which it flies.

This project is free software as defined by the Free Software Foundation, it is released under the GNU General Public License (GPL). This means you are free to download, copy, modify, redistribute, disassemble, analyse or sell Slingshot under the terms of the aforementioned license. Enjoy!

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Added: 2007-07-16 License: Freeware Price:
836 downloads
gronogal 0.1

gronogal 0.1


gronogal is a software for easy uploading of many photos to grono.net. more>>
gronogal is a software for easy uploading of many photos to grono.net.
Main features:
- uploading single photos and whole directories te a chosen gallery
- creating new galleries
- editing existing galleries
- checking the transfer limit
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Added: 2006-09-07 License: GPL (GNU General Public License) Price:
1142 downloads
mod_limitipconn 0.04

mod_limitipconn 0.04


mod_limitipconn is an Apache module which allows web server administrators to limit the number of simultaneous downloads. more>>
mod_limitipconn is an Apache module which allows web server administrators to limit the number of simultaneous downloads permitted from a single IP address.

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Added: 2006-05-11 License: The Apache License 2.0 Price:
1265 downloads
python-dime 0.1

python-dime 0.1


python-dime project provides a way to parse and generate DIME messages. more>>
python-dime project provides a way to parse and generate DIME messages.

Direct Internet Message Encapsulation (DIME) is a binary message format that can be used to encapsulate multiple payloads into a single message.

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Added: 2007-07-26 License: GPL (GNU General Public License) Price:
821 downloads
Data::Region 1.0

Data::Region 1.0


Data::Region Perl module can define hierarchical areas with behaviors. more>>
Data::Region Perl module can define hierarchical areas with behaviors.

SYNOPSIS

use Data::Region;

$r = Data::Region->new( 8.5, 11, { data => PageObj->new() } );
$r->data( PageObj->new() );

foreach my $c ( $r->subdivide(2.5,3) ) {
$a = $c->area(0.25,0.25, 2.25,2.75);
$a2 = $c->area(0.25,0.25, -0.25,-0.25); # as offset from lower right

($t,$m,$b) = $a->split_vertical(2,5,1); # sequential heights
($t,$m,$b) = $a->split_vertical_abs(0,2,7); # absolute offsets
($l,$r) = $a->split_horizontal(2); # $l gets width of 2, $r gets the rest

my($x1,$y1,$x2,$y2) = $a->coords();
my $data = $a->data(); # data inherits from parent, if not set
$a->action( sub { $data->setfont("Times-Bold", 10);
$data->text($x1,$y1, "Some Text");
$data->line( $_[0]->coords() ); # the non-closure way
} );
}
$r->render(); # heirarchically perform all the actions

# Get some info about a region:
($w,$h) = ( $a->width(), $a->height() );
($x1,$y1, $x2,$y2) = $a->coords();
($x1,$y1) = $a->top_left();
($x2,$y1) = $a->top_right();
($x1,$y2) = $a->bottom_left();
($x2,$y2) = $a->bottom_right();

Data::Region allows you to easily define a set of nested (2-dimensional) areas, defined by related coordinates, and to associate actions with them. The actions can then be performed hierarchically from any root of the tree.

Data::Region was written to provide an easy way to do simple page layout, but has, perhaps, more general uses.

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Added: 2007-08-03 License: Perl Artistic License Price:
812 downloads
Geo::Spline 0.16

Geo::Spline 0.16


Geo::Spline is a Perl module to calculate geographic locations between GPS fixes. more>>
Geo::Spline is a Perl module to calculate geographic locations between GPS fixes.

SYNOPSIS

use Geo::Spline;
my $p0={time=>1160449100.67, #seconds
lat=>39.197807, #degrees
lon=>-77.263510, #degrees
speed=>31.124, #m/s
heading=>144.8300}; #degrees clockwise from North
my $p1={time=>1160449225.66,
lat=>39.167718,
lon=>-77.242278,
speed=>30.615,
heading=>150.5300};
my $spline=Geo::Spline->new($p0, $p1);
my %point=$spline->point(1160449150);
print "Lat:", $point{"lat"}, ", Lon:", $point{"lon"}, "nn";

my @points=$spline->pointlist();
foreach (@points) {
print "Lat:", $_->{"lat"}, ", Lon:", $_->{"lon"}, "n";
}

This program was developed to be able to calculate the position between two GPS fixes using a 2-dimensional 3rd order polynomial spline.

f(t) = A + B(t-t0) + C(t-t0)^2 + D(t-t0)^3 #position in X and Y
f(t) = B + 2C(t-t0) + 3D(t-t0)^2 #velocity in X and Y

I did some simple Math (for an engineer with a math minor) to come up with these formulas to calculate the unknowns from our knowns.

A = x0 # when (t-t0)=0 in f(t)
B = v0 # when (t-t0)=0 in f(t)
C = (x1-A-B(t1-t0)-D(t1-t0)^3)/(t1-t0)^2 # solve for C from f(t)
C = (v1-B-3D(t1-t0)^2)/2(t1-t0) # solve for C from f(t)
D = (v1(t1-t0)+B(t1-t0)-2x1+2A)/(t1-t0)^3 # equate C=C then solve for D

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Added: 2007-05-18 License: Perl Artistic License Price:
890 downloads
Underworld Online 7.7.5

Underworld Online 7.7.5


Underworld Online is a Fantasy MMORPG - Combats, Magic, Weapons, Spells, Guilds, Buildings. more>>
Underworld Online is a Fantasy MMORPG - Combats, Magic, Weapons, Spells, Guilds, Buildings.

A castle is being taken over by an army of monsters. In this graphical fantasy MMORPG you can either fight and try to save the reign, or you can join the evil forces. Combats, Magic, Weapons, Spells, Guilds, Buildings, Buy/Sell.

You play immediately with your browser, no download nor registration required. Has music and sound. Invite your friends to help you!

Introduction:

During the past centuries, the Reign of Graiel has known a prosperous life of richness and well-being.

Months ago, the King died in mysterious circumstances and his daughter, Asia the princess, run into severe illness. Things turned dramatically worse when the princess, hanging around the castle dungeons, found some ancient magic books, filled with forgotten formulas written with human blood.

Rumours around say that Asia, excited by her curiosity, read with loud voice a few phrases from that evil books, capable of awakening the lost souls from the Land of the Dead. Magic words pronounced by her have would have opened a dimensional breach, letting obscure creatures lurking in the never ending Darkness to reach out to our World.

Now, the Castle of Graiel is totally under control of evil creatures with enormous power. Asia the princess lives locked in her bedroom, captured by the monsters which are now planning their raise and conquer of the whole Reign.
Many brave knights have dead trying to defeat the creatures.

Take this challenge, stranger, save us, and become a King!
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Added: 2006-12-27 License: GPL (GNU General Public License) Price:
1039 downloads
The streak plug-in

The streak plug-in


The streak plug-in is a Gimp plug-in that makes simulation of a streak camera. more>>
The streak plug-in is a Gimp plug-in that makes simulation of a streak camera.

A streak camera images an object through a slit - thus getting a kind of "one dimensional image". This image is propagated along the second dimension of the image plane at a constant speed. The result is a picture of the time dependency of the object.

The plug-in takes a film (multilayer image), cuts a slice of selectable width and position out of each layer and puts the slices together to the streak image.

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Added: 2006-09-15 License: GPL (GNU General Public License) Price:
1134 downloads
libmousetrap 0.6.1

libmousetrap 0.6.1


libmousetrap is a C library to create and manipulate mousetrap buffers in system memory. more>>
libmousetrap is a C library to create and manipulate mousetrap buffers in system memory. Mousetrap buffers are compressed two dimensional cartesian grids with integer precision.
A mousetrap buffer retains an integer identifier for every point in the grid, so that later the identifier can be referenced with a set of (x, y) coordinates.
Why?
Well, when youre doing graphics programming and somebody clicks something with the mouse, all you get is the x and y location where the click was, and what mouse button they pressed.
With the x and y location, all you can really get is the color of the pixel they clicked on, which doesnt tell you what *thing* on the screen they clicked on. There are lots of different ways to determine in your program what thing was clicked on, this library is one of them.
Enhancements:
- This release fixes a really silly but really nasty bug, I called the function to create mousetraps out of SDL surfaces with the flags and the id parameters mixed up.
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Added: 2006-06-05 License: LGPL (GNU Lesser General Public License) Price:
1237 downloads
dimnum 1.16

dimnum 1.16


dimnum is a C++ template library for dimensional numbers. more>>
dimnum is a C++ template library for dimensional numbers.

The dimnum C++ library provides templated classes for storage of dimensional numbers, like lengths, masses, and so on. The classes are templated over the storage data type, and the base unit.

Output as well as input (with automatic recognition of the base unit) through standard C++ streams is supported. The dimension information is handled completely at compile time, so no additional memory is required for storage.

In both dimnum and SIunits, numbers are represented in a given base (ie. you can for instance declare a length object which is expressed in meters). In SIunits this base unit ("one meter") is fixed at compile time (ie. all values are represented in meters), while in dimnum it is a template parameter. In dimnum you can have (in one program) both values expressed in the SI basis and in, for instance, the British foot/inch/... basis, while in SIunits you have to make a choice.

Dimnum uses a different treatment of models in which dimensions merge (for instance the high energy physics model, in which the speed of light and Plancks constant are put equal to one). In dimnum models can be mixed, in SIunits you have to choose one.

Treatment of I/O differs (dimnums method uses more static data where SIunits uses dynamical switches); a bit hard to explain in one or two lines.

Dimnums actual code (i.e. excluding the constant lists and the dimensionful number declarations) is also a bit smaller.
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Added: 2006-07-28 License: GPL (GNU General Public License) Price:
1186 downloads
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