Free uml analysis software for linux

PyReverse is a set of tools for reverse engineering Python code. So far, it features dependency analysis tools, documentation generation, and XMI generation for importation in a UML modeling tool. A special module can be used to generate files readable by Argo UML.
currently PyReverse build a representation of the source tree with:
- docstring for modules, classes, functions
- exceptions raised in functions
- modules attributes, functions, classes
- classs attributes defined in the class scope, inheritance links
- class instances attributes defined in the __init__ method. If possible, get the default value
- functions parameters name and optional default value
- detection of interface/abstract classes and visibility using regular expressions
- detection of links between classes using attributes default value
PyReverse provides modules which use this representation for:
- producing a XMI 1.0 UML 1.3 DOM representation
- creating PGML diagrams definitions according to the project representation, the XMI definition and a XML file which describes briefly the content of the diagrams (see ???). Those diagrams can be readen/edited with Argo UML
- generating UML diagrams readable by VCG (see ???).
- analyzing dependencies (see ???).
- generate skeleton for unit tests, using the unit testing framework for the standard library.

phpOpenTracker is a framework solution for the analysis of website traffic and visitor analysis.
It features a logging engine that, either invoked as a web-bug by a HTML tag or embedded with two lines of code into your PHP application, logs each request to a website into a database. One installation of phpOpenTracker can track an arbitrary number of web-sites.
Through the phpOpenTracker API module you can easily access the gathered data and perform complex operations on it, like for instance the analysis of your visitors clickpaths.
The analysis of clickpaths is essential when you want to measure the usability of your website. phpOpenTrackers API functions shortest_paths and top_paths help to answer questions like: Is the navigation intuitive enough? Do visitors find the shortest, most direct way from A to B? How are ads percepted?
On what document do they leave the website -- and where to? The answers to these questions help you to improve the user experience and the way your website is percepted by your customers.
Main features:
- Complete framework for the analysis of website traffic and visitor analysis.
- Highly optimized logging engine that stores the access information into a database.
- Powerful interface to access the gathered data and perform operations on it: from simple statistical queries to the complex analysis of the visitors clickpaths.
- Can be used to track both dynamic and static pages.
- Can be invoked directly from within PHP applications, for instance by a Content Management System, or through a HTML image tag -- a so called Web Bug.
- One installation of phpOpenTracker may track an arbitrary number of different web sites.

BASE is the Basic Analysis and Security Engine. It is based on the code from the Analysis Console for Intrusion Databases (ACID) project.
This application provides a web front-end to query and analyze the alerts coming from a SNORT IDS system.
BASE is a web interface to perform analysis of intrusions that snort has detected on your network. It uses a user authentication and role-base system, so that you as the security admin can decide what and how much information each user can see. It also has a simple to use, web-based setup program for people not comfortable with editing files directly.
BASE is supported by a group of volunteers. They are available to answer any questions you may have or help you out in setting up your system. They are also skilled in intrusion detection systems and make use of that knowledge in the development of BASE.
Enhancements:
- This release fixes a number of bugs with PHP 5.
- It also adds a number of new features.

Sequence Analysis project is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant.

These clients have graciously allowed me to release these works into the public domain as freeware for Macintosh OS X in order to promote the platform and to encourage migration from Classic.

The upper window panel can hold several sequences, which are both editable and selectable. The tabs in the lower analysis panel try to keep up with the current sequence selection to provide immediate feedback. The selection is used in some modules as only the portion being analyzed for other modules i.e. Digest is used to determine if enzymes cut in the in or outside of the selection.

Most commonly available sequence formats have been reverse engineered. You can also access a sequences from the NCBI via its GID or UID. This currently cannot be done from behind a firewall.

Most of the analyses are simple enough that they are obvious to use, Composition, pI. Others could stand some documenation i.e. Pairwise and Primer Design. The Publish tab uses a string to control the layout. Click on the Legend button for some help.

UML2PHP5 is a plugin designed to fit on the Dia diagram application. UML2PHP5 automatically generates the PHP code structure following the diagrams classes.
PHP5s and javas object model increasing similarity for example, there was an urgent need to update the tools for programmers.
UML2PHP5 is Open Source, under GPL. This means you can develop the source code to suit your need(s) and redistribute it as long as it remains under GPL terms.
Using UML2PHP5:
- Draw your UML diagram(s)
- Save it with .dia as file extension
- Export through the XSL filter (*.code)
- A popup opens :
- Select UML-CLASSES-EXTENDED in the top box
- Select PHP5 in the bottom box
- OK
The plugin generates as many .class.php files as necessary, in the same directory as the original .dia file.
Enhancements:
- A new tool was added: php2uml, which generates UML diagrams from PHP classes files.
- This tool uses the Reflection API.

CoreLinux++ Function Load Library (libclfll++) takes advantage of the abstract Library Load framework in the CoreLinux libclfw++ library by providing management of loading Linux shared libraries.
Application developers define function objects as wrappers and can then dynamically load the functions. It is very useful for implementing a framework for plug-ins.
Main features:
- Enlist members ( for requirements, analysis, design, and development )
- Formalize conventions for Object Oriented Analysis (OOA) and Design (OOD).
- Formalize standards and conventions for C++ code style.
- Gather requirements. Perform OOA and OOD using UML as the modeling language.
- Implement designs and example drivers.
- Develop utilities and applications for Linux that are CoreLinux++ certified
- Showcase CoreLinux++ certified applications by others

Directory Analysis Tool is used to analyze LDAP directories and report on their contents.

Useful if you want to find inactive accounts, people who havent changed passwords, or who has administrator privileges.

Network Security Analysis Tool is a fast, stable bulk security scanner designed to audit remote network services and check for versions, security problems, gather information about the servers and the machine, and much more.

A manpage providing extensive information on NSAT has been included in the distribution. It is available after a make install, or just by typing man doc/nsat.8 from this dir. It is suggested that you inform yourself at least about the -v (scan verbosity) option and edit the configuration file. To learn about changes in this version, please consult doc/CHANGES.

New to this version is support for distributed scanning. The manpage describes how to do a distributed scan. Note that distributed scanning in this version is just a preliminary, proof-of-concept, implementation with no guarantees for its security, reliability, or performance.

Check for updated vulnerability lists, config files, etc. from
http://nsat.sourceforge.net

Currently, these are lists of vulnerabilities:

nsat.cgi (CGI scripts)
nsat.conf (configuration)
src/mod/snmp.h (SNMP community names)