ozone 0.3 pre 4
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OZONE 0.3 pre 4
OZONE is a 3D marble game. more>>
OZONE is a 3D marble game.
OZONE is a free game similar to enigma, esprit or oxyd, but in 3D. You also have to move a marble, matching pairs of "OXYD stones" and dont break your marble.
<<lessOZONE is a free game similar to enigma, esprit or oxyd, but in 3D. You also have to move a marble, matching pairs of "OXYD stones" and dont break your marble.
Download (12.3MB)
Added: 2006-09-26 License: GPL (GNU General Public License) Price:
1129 downloads
OZONE 0.15
OZONE is a free, modular 3-D marble game, released under the terms of the GNU General Public Licence. more>>
OZONE is a free, modular 3-D "marble game", released under the terms of the GNU General Public Licence, either version 2, or (at your option) any later version.
Binaries are available for both Windows and Linux; ihope is working on an OS X version but is having little success at the moment.
OZONE uses OpenGL,SDL,ODE, and others, see Libs.
<<lessBinaries are available for both Windows and Linux; ihope is working on an OS X version but is having little success at the moment.
OZONE uses OpenGL,SDL,ODE, and others, see Libs.
Download (6.3MB)
Added: 2005-10-04 License: GPL (GNU General Public License) Price:
1481 downloads
Posadis Zone Editor 0.9pre
Posadis Zone Editor is a graphical DNS update client. more>>
The Posadis Zone Editor is a graphical tool to edit DNS (Domain Name System) zones using DNS update.
Because it uses zone transfers, you can simply edit the DNS zone, and have only the changes transferred to the DNS server.
<<lessBecause it uses zone transfers, you can simply edit the DNS zone, and have only the changes transferred to the DNS server.
Download (0.12MB)
Added: 2005-04-26 License: GPL (GNU General Public License) Price:
1649 downloads
Gabedit 2.0.9 Pre
Gabedit is a GUI for Gaussian and Molpro. more>>
Gabedit is a Graphical User Interface to Gaussian, Molcas, Molpro and MPQC computational chemistry packages.
Gabedit includes graphical facilities for generating keywords and options, molecule specifications and ther input sections for even the most advanced calculation types Gabedit includes an advanced Molecule Builder.
You can use it to rapidly sketch in molecules and examine them in three dimensions. You can build molecules by atom, ring, group, amino acid and nucleoside. You can also read geometry from a file. Most major molecular file formats are supported.
Gabedit includes a Gaussian, Molcas, Molpro and MPQC Calculation Setup window which allows you to set up Gaussian, Molcas, Molpro and MPQC jobs in a simple and straightforward manner.
Gabedit includes a text editor for editing Molcas, Molpro, Gaussian and MPQC input files.
Gabedit can graphically display a variety of Gaussian, Molcas, Molpro, MPQC and (partially) ADF calculation results, including the following:
- Molecular orbitals.
- Surfaces from the electron density, electrostatic potential, NMR shielding density, and other properties.
- Surfaces may be displayed in solid, translucent and wire mesh modes.
- Surfaces can be colored by a separate property.
- Contours (colorcoded).
- Planes (colorcoded).
- Dipole
- XYZ axes and the principal axes of the molecule.
- Animation of the normal modes corresponding to vibrational frequencies.
- Animation of the rotation of geometry, surface, dipole, xyz and the principal axes of the molecule.
- Animation of contours.
- Animation of colorcoded planes.
Gabedit can display IR and Raman computed spectra. Gabedit can generate a povray file for geometry (atoms + bonds, including hydrogens bond), surfaces (including colorcoded surfaces), contours, colorcoded planes.
Gabedit can save picture in PPM, BMP , (JPEG) and PS format. Gabedit can generate automatically a series of pictures for animation (vibration, geometry convergence, rotation, contours, colorcoded planes).
<<lessGabedit includes graphical facilities for generating keywords and options, molecule specifications and ther input sections for even the most advanced calculation types Gabedit includes an advanced Molecule Builder.
You can use it to rapidly sketch in molecules and examine them in three dimensions. You can build molecules by atom, ring, group, amino acid and nucleoside. You can also read geometry from a file. Most major molecular file formats are supported.
Gabedit includes a Gaussian, Molcas, Molpro and MPQC Calculation Setup window which allows you to set up Gaussian, Molcas, Molpro and MPQC jobs in a simple and straightforward manner.
Gabedit includes a text editor for editing Molcas, Molpro, Gaussian and MPQC input files.
Gabedit can graphically display a variety of Gaussian, Molcas, Molpro, MPQC and (partially) ADF calculation results, including the following:
- Molecular orbitals.
- Surfaces from the electron density, electrostatic potential, NMR shielding density, and other properties.
- Surfaces may be displayed in solid, translucent and wire mesh modes.
- Surfaces can be colored by a separate property.
- Contours (colorcoded).
- Planes (colorcoded).
- Dipole
- XYZ axes and the principal axes of the molecule.
- Animation of the normal modes corresponding to vibrational frequencies.
- Animation of the rotation of geometry, surface, dipole, xyz and the principal axes of the molecule.
- Animation of contours.
- Animation of colorcoded planes.
Gabedit can display IR and Raman computed spectra. Gabedit can generate a povray file for geometry (atoms + bonds, including hydrogens bond), surfaces (including colorcoded surfaces), contours, colorcoded planes.
Gabedit can save picture in PPM, BMP , (JPEG) and PS format. Gabedit can generate automatically a series of pictures for animation (vibration, geometry convergence, rotation, contours, colorcoded planes).
Download (1.2MB)
Added: 2007-05-25 License: BSD License Price:
886 downloads
G15Daemon 1.9.0 pre 2.0
G15daemon takes control of the Logitech G15 keyboard, allowing the use of all keys through the Linux kernel uinput device driver more>>
G15daemon takes control of the Logitech G15 keyboard, allowing the use of all keys through the Linux kernel input device driver.
It also controls the use of the keyboards LCD display, allows multiple client applications to connect, and gives the user the ability to quickly switch between LCD client applications.
G15Daemon uses libg15 from g15tools for keyboard control.
<<lessIt also controls the use of the keyboards LCD display, allows multiple client applications to connect, and gives the user the ability to quickly switch between LCD client applications.
G15Daemon uses libg15 from g15tools for keyboard control.
Download (0.27MB)
Added: 2007-02-17 License: GPL (GNU General Public License) Price:
983 downloads
Glsof 0.10.0 pre-alpha4
Glsof is a user interface for lsof. more>>
Glsof is a user interface for lsof.
Its developed with C language (under GNU General Public License), and use gconf, libglade and libgnome/ui.
Main features:
- Lists for single process, separated in queries.
- Manage for queries.
- Manual save of output, or automatically with autorefresh/save.
- Autosearch for lsof bin.
- Multi-languages support (gettext).
- Popupmenu for general control on single query.
<<lessIts developed with C language (under GNU General Public License), and use gconf, libglade and libgnome/ui.
Main features:
- Lists for single process, separated in queries.
- Manage for queries.
- Manual save of output, or automatically with autorefresh/save.
- Autosearch for lsof bin.
- Multi-languages support (gettext).
- Popupmenu for general control on single query.
Download (0.50MB)
Added: 2006-01-06 License: GPL (GNU General Public License) Price:
1388 downloads
teepeedee 0.3.2-pre
teepeedee provides a fast, single-threaded personal HTTP(S) and FTP server. more>>
teepeedee provides a fast, single-threaded personal HTTP(S) and FTP server.
teepeedee is a small, fast, single-threaded file server.
It is very scalable, and can serve multiple files over HTTPS, HTTP and FTP simultaneously, listening on any number of ports and providing entirely different views of the filesystem to different users.
It supports most of the draft-ietf-ftpext-mlst-16.txt FTP extensions, as well as EPRT, EPSV, AUTH TLS, and HTTP 1.1 persistent connections.
vsftpd is 20% slower than teepeedee for 512 transfers, and will probably scale even worse as the number of transfers rises. OTOH both servers were not saturating the link, so possibly the problem was with the wget clients or something wasnt tweaked in the network stacks of the two machines.
teepeedee will probably scale even better on single CPU boxes, because of its single threaded design. On multiprocessor boxes vsftpd might have an advantage. Of course it would be fairly easy to get teepeedee to fork enough times to exploit the multiple processors but I dont have an SMP box so I havent done it.
Enhancements:
- License update
- Include manpage
<<lessteepeedee is a small, fast, single-threaded file server.
It is very scalable, and can serve multiple files over HTTPS, HTTP and FTP simultaneously, listening on any number of ports and providing entirely different views of the filesystem to different users.
It supports most of the draft-ietf-ftpext-mlst-16.txt FTP extensions, as well as EPRT, EPSV, AUTH TLS, and HTTP 1.1 persistent connections.
vsftpd is 20% slower than teepeedee for 512 transfers, and will probably scale even worse as the number of transfers rises. OTOH both servers were not saturating the link, so possibly the problem was with the wget clients or something wasnt tweaked in the network stacks of the two machines.
teepeedee will probably scale even better on single CPU boxes, because of its single threaded design. On multiprocessor boxes vsftpd might have an advantage. Of course it would be fairly easy to get teepeedee to fork enough times to exploit the multiple processors but I dont have an SMP box so I havent done it.
Enhancements:
- License update
- Include manpage
Download (0.13MB)
Added: 2007-04-28 License: GPL (GNU General Public License) Price:
911 downloads
GNOME Office Pre 1.2
GNOME Office is the premier suite of office productivity applications designed for the GNOME desktop environment. more>>
GNOME Office is the premier suite of office productivity applications designed for the GNOME desktop environment.
Some of the applications also can run on Windows or Mac OS X. They provide powerful, efficient office productivity capabilities as free (GPL) software.
Main features:
- AbiWord word processor
- Gnumeric spreadsheet
- Gnome-DB data access components
<<lessSome of the applications also can run on Windows or Mac OS X. They provide powerful, efficient office productivity capabilities as free (GPL) software.
Main features:
- AbiWord word processor
- Gnumeric spreadsheet
- Gnome-DB data access components
Download (27MB)
Added: 2005-07-26 License: GPL (GNU General Public License) Price:
1561 downloads
Hook::Scope 0.04
Hook::Scope is a Perl extension for adding hooks for exiting a scope. more>>
Hook::Scope is a Perl extension for adding hooks for exiting a scope.
SYNOPSIS
use Hook::Scope;
{
Hook::Scope::POST(sub { print "I just left my scope"});
print "you will see this first!";
}
use Hook::Scope qw(POST PRE); # only POST can be exported
{
POST { print "foo" };
POST sub { print "bar"}; # can have multiple POSTs, last added, first run
PRE { print "this runs first" };
}
ABSTRACT
This module allows you to register subroutines to be executed when the scope they were registered in, has been left.
POST
POST takes a reference to a subroutine or a subroutine name and will register that subroutine to be executed when the scope is left. Note that even if the scope is left using die(), the subroutine will be executed.
<<lessSYNOPSIS
use Hook::Scope;
{
Hook::Scope::POST(sub { print "I just left my scope"});
print "you will see this first!";
}
use Hook::Scope qw(POST PRE); # only POST can be exported
{
POST { print "foo" };
POST sub { print "bar"}; # can have multiple POSTs, last added, first run
PRE { print "this runs first" };
}
ABSTRACT
This module allows you to register subroutines to be executed when the scope they were registered in, has been left.
POST
POST takes a reference to a subroutine or a subroutine name and will register that subroutine to be executed when the scope is left. Note that even if the scope is left using die(), the subroutine will be executed.
Download (0.010MB)
Added: 2007-05-23 License: Perl Artistic License Price:
884 downloads
BALLView 1.2 pre 06.07
BALLView is an extensible viewer for bio-molecular structures. more>>
BALLView is an extensible viewer for bio-molecular structures.
BALLView project provides all standard models and offers rich functionality for molecular simulation and modeling, including molecular mechanics methods (AMBER and CHARMM force fields), continuum electrostatics methods employing a Finite-Difference Poisson Boltzmann solver, and secondary structure calculation.
Since BALLView is based on BALL (the Biochemical ALgorithms Library), it is easily extensible on the level of C++ code and it has an Python interface to allow interactive rapid prototyping.
Whats New in 1.1.1 Stable Release:
- This version finally brings full support for Python, DLLs, and nmake Makefiles under Windows.
- A large number of prominent fixes were made, especialy for g++ 4.x.
- Some new functionality was added to BALLView.
Whats New in 1.2 pre 06.07 Development Release:
- Two new minimizers and support for the MMFF94 electrostatics switching function were added.
- The documentation was extended.
- Severals bugs were fixed.
<<lessBALLView project provides all standard models and offers rich functionality for molecular simulation and modeling, including molecular mechanics methods (AMBER and CHARMM force fields), continuum electrostatics methods employing a Finite-Difference Poisson Boltzmann solver, and secondary structure calculation.
Since BALLView is based on BALL (the Biochemical ALgorithms Library), it is easily extensible on the level of C++ code and it has an Python interface to allow interactive rapid prototyping.
Whats New in 1.1.1 Stable Release:
- This version finally brings full support for Python, DLLs, and nmake Makefiles under Windows.
- A large number of prominent fixes were made, especialy for g++ 4.x.
- Some new functionality was added to BALLView.
Whats New in 1.2 pre 06.07 Development Release:
- Two new minimizers and support for the MMFF94 electrostatics switching function were added.
- The documentation was extended.
- Severals bugs were fixed.
Download (4.2MB)
Added: 2007-05-18 License: GPL (GNU General Public License) Price:
890 downloads
cpuinfo 1.0-Pre R2
cpuinfo consists in an API/library used by programs to get information about the underlying CPU. more>>
Such information include CPU vendor, model name, cache hierarchy, and supported features (e.g. CMP, SMT, SIMD). cpuinfo is also a standalone program to demonstrate the use of this API.
The cpuinfo library is distributed under the terms of the GNU Lesser General Public License (LGPL).
cpuinfo has been built and tested on the following platforms:
- i386 Linux GCC >= 3.3.4, G++ >= 2.96
- i386 NetBSD >= 2.0 GCC >= 3.3.3
- i386 FreeBSD >= 5.3 GCC >= 3.3.3
- i386 MacOS X >= 10.4.9 GCC >= 4.0.1
- x86_64 Linux GCC >= 3.3.4
- ia64 Linux GCC 4.1
- ia64 HP-UX >= 11i v2 HP C/aC++ A.06.14, GCC >= 3.4.3
- ia64 FreeBSD >= 6.1 GCC >= 3.4.4
- ppc Linux GCC >= 3.4.3
- ppc MacOS X >= 10.2.8 GCC >= 3.1
- mips IRIX >= 6.5 MIPSpro >= 7.3.1.3 (C++), MIPSpro >= 7.4 (C), GCC >= 3.3
<<lessThe cpuinfo library is distributed under the terms of the GNU Lesser General Public License (LGPL).
cpuinfo has been built and tested on the following platforms:
- i386 Linux GCC >= 3.3.4, G++ >= 2.96
- i386 NetBSD >= 2.0 GCC >= 3.3.3
- i386 FreeBSD >= 5.3 GCC >= 3.3.3
- i386 MacOS X >= 10.4.9 GCC >= 4.0.1
- x86_64 Linux GCC >= 3.3.4
- ia64 Linux GCC 4.1
- ia64 HP-UX >= 11i v2 HP C/aC++ A.06.14, GCC >= 3.4.3
- ia64 FreeBSD >= 6.1 GCC >= 3.4.4
- ppc Linux GCC >= 3.4.3
- ppc MacOS X >= 10.2.8 GCC >= 3.1
- mips IRIX >= 6.5 MIPSpro >= 7.3.1.3 (C++), MIPSpro >= 7.4 (C), GCC >= 3.3
Download (0.024MB)
Added: 2007-07-23 License: LGPL (GNU Lesser General Public License) Price:
828 downloads
MyFoxyWeb2 0.3
MyFoxyWeb2 is a Firefox extension that downloads your bookmarks from Yahoo! My Web 2.0 and stores them locally. more>>
MyFoxyWeb2 project is a Firefox extension that downloads your bookmarks from Yahoo! My Web 2.0 and stores them locally.
Social bookmarking is great, but sometimes youre offline. And sometimes youd like to use social bookmarking sites as a repository for some local links (in particular, Yahoo! My Web 2.0 will allow you to do that). So it is very useful to be able to read all bookmarks into your preferred browser. For instance, I have JPackage-related links on all my boxes.
MyFoxyWeb2 is a Firefox extension that provides the same services of foxylicious for Yahoo! My Web 2.0. You can retrieve all your (public) bookmarks and have them neatly organised (possibly in a tag-based hierarchy). Most of the code in MyFoxyWeb2 is actually foxylicious code. MyFoxyWeb2 is free software distributed under the GNU Lesser General Public License.
There is no documentation, as the usage of the extension is really self-explanatory: you must choose a folder in which all your Yahoo! My Web 2.0 bookmarks will be stored. You have some options (hierarchical or not hierarchical, for example), and the choice of pre-deleting all bookmarks in the chosen folder. An item in the "Tools" menu lets the user access the preferences/updating dialog.
As an additional bonus, a right-click menu item helps in adding easily bookmarks to Yahoo! My Web 2.0.
<<lessSocial bookmarking is great, but sometimes youre offline. And sometimes youd like to use social bookmarking sites as a repository for some local links (in particular, Yahoo! My Web 2.0 will allow you to do that). So it is very useful to be able to read all bookmarks into your preferred browser. For instance, I have JPackage-related links on all my boxes.
MyFoxyWeb2 is a Firefox extension that provides the same services of foxylicious for Yahoo! My Web 2.0. You can retrieve all your (public) bookmarks and have them neatly organised (possibly in a tag-based hierarchy). Most of the code in MyFoxyWeb2 is actually foxylicious code. MyFoxyWeb2 is free software distributed under the GNU Lesser General Public License.
There is no documentation, as the usage of the extension is really self-explanatory: you must choose a folder in which all your Yahoo! My Web 2.0 bookmarks will be stored. You have some options (hierarchical or not hierarchical, for example), and the choice of pre-deleting all bookmarks in the chosen folder. An item in the "Tools" menu lets the user access the preferences/updating dialog.
As an additional bonus, a right-click menu item helps in adding easily bookmarks to Yahoo! My Web 2.0.
Download (0.034MB)
Added: 2006-10-20 License: LGPL (GNU Lesser General Public License) Price:
1100 downloads
Abox 0.2.4
Abox project is a small Linux system for tight spots. more>>
Abox project is a small Linux system for tight spots.
The target space is from 8MB and up, to be run from a flash drive, a USB-Flash dongle, a CDROM or an old computer(or whatever).
The system will be composed of a Linux kernel, busybox, and miscellaneous Debian stable binaries. The key concept here is that it is based primarily on pre-compiled binaries from an existing distribution. Debian stable is my choice for a base. It is small, a stripped down system. Its intended to be small. Not quite as small as a boot floppy, and not as big as 100s of megabytes.
I expect to gain a number of benefits from working with pre-built binaries from an existing distribution. Stability of the system, well know source collection, no hassles with trying to recompile the world, etc. Also, extensibility of the system is an important goal. By working from existing binaries from standard packages, it should be easy to add new components or change as the need arises.
My goal is to create some tools to help with building and organizing this small linux distro. I want to offer easy instructions on how to recreate, modify, or extend it. Its target will be embedded or limited space devices as a stripped down Debian/Busybox system.
<<lessThe target space is from 8MB and up, to be run from a flash drive, a USB-Flash dongle, a CDROM or an old computer(or whatever).
The system will be composed of a Linux kernel, busybox, and miscellaneous Debian stable binaries. The key concept here is that it is based primarily on pre-compiled binaries from an existing distribution. Debian stable is my choice for a base. It is small, a stripped down system. Its intended to be small. Not quite as small as a boot floppy, and not as big as 100s of megabytes.
I expect to gain a number of benefits from working with pre-built binaries from an existing distribution. Stability of the system, well know source collection, no hassles with trying to recompile the world, etc. Also, extensibility of the system is an important goal. By working from existing binaries from standard packages, it should be easy to add new components or change as the need arises.
My goal is to create some tools to help with building and organizing this small linux distro. I want to offer easy instructions on how to recreate, modify, or extend it. Its target will be embedded or limited space devices as a stripped down Debian/Busybox system.
Download (7.5MB)
Added: 2007-06-14 License: GPL (GNU General Public License) Price:
862 downloads
Shadows Rising 0.0.5b pre-alpha
Shadows Rising is a Web-based Role Playing Game open to customisation. more>>
Shadows Rising project is a Web-based Role Playing Game open to customisation.
Shadows Rising is an RPG game engine. The engine is aimed at enabling users to install a number of game modules which will use the engine to present an RP game to players on the users site.
The basic concept of the game engine is to create a highly configurable and extendable engine to support Role Playing games under a variety of ruleset regimes. The game engine therefore keeps all game content and data stored externally to the engine in what are known as "Game Modules". These Game Modules are basically XHTML and CSS template files, database stored data, content and game items. As a result individual users may create custom Game Modules tailored for specific game types, locations, plots, NPCs and timelines.
This immense ability makes possible a large variety of RPG games, something deeply supported by the ability to configure almost any game engine settings, and add game engine "Plug-Ins" which extend both functionality and support for more complex Game Modules. The game engine is pre-packaged with the "Shadows Rising RPG Game" created by the game engine developers. A primary development objective is making both game engine configuration and Game Module creation as easy a process as possible - including the ability to use alternative RPG rulesets that users may be more comfortable and familiar with.
Shadows Rising is written in the PHP language, with data stored and retrieved using either the MySQL or PostgreSQL Database Management Systems which use SQL (Simplified Query Language). Output conforms to the XHTML 1.0 Strict, XHTML 1.1 and CSS standards. Javascript is used on a limited basis.
Enhancements:
- minor update to 0.0.5 to correct a number of small issues and update any corrupted files hosted by Sourceforge at the last release.
<<lessShadows Rising is an RPG game engine. The engine is aimed at enabling users to install a number of game modules which will use the engine to present an RP game to players on the users site.
The basic concept of the game engine is to create a highly configurable and extendable engine to support Role Playing games under a variety of ruleset regimes. The game engine therefore keeps all game content and data stored externally to the engine in what are known as "Game Modules". These Game Modules are basically XHTML and CSS template files, database stored data, content and game items. As a result individual users may create custom Game Modules tailored for specific game types, locations, plots, NPCs and timelines.
This immense ability makes possible a large variety of RPG games, something deeply supported by the ability to configure almost any game engine settings, and add game engine "Plug-Ins" which extend both functionality and support for more complex Game Modules. The game engine is pre-packaged with the "Shadows Rising RPG Game" created by the game engine developers. A primary development objective is making both game engine configuration and Game Module creation as easy a process as possible - including the ability to use alternative RPG rulesets that users may be more comfortable and familiar with.
Shadows Rising is written in the PHP language, with data stored and retrieved using either the MySQL or PostgreSQL Database Management Systems which use SQL (Simplified Query Language). Output conforms to the XHTML 1.0 Strict, XHTML 1.1 and CSS standards. Javascript is used on a limited basis.
Enhancements:
- minor update to 0.0.5 to correct a number of small issues and update any corrupted files hosted by Sourceforge at the last release.
Download (MB)
Added: 2007-01-03 License: GPL (GNU General Public License) Price:
1031 downloads
NeoBio pre-alpha
NeoBio project consists of Bioinformatics algorithms in Java. more>>
NeoBio project consists of Bioinformatics algorithms in Java.
What algorithms? The current version consists mainly of (pairwise) sequence alignment algorithms such as the classical dynamic programming methods of Needleman & Wunsch (global alignment) and Smith & Waterman (local alignment).
Anything else? Yes, a more efficient approach, due to Crochemore, Landau and Ziv-Ukelson is also available.
It uses Lempel-Ziv compression to speed-up the computation of the dynamic programming matrix. It also relies on the SMAWK algorithm, due to Aggarwal et al., that computes all column maxima of a totally monotone matrix in linear time.
Hum... And all sequence alignment algorithms support simple scoring schemes as well as substitution matrices such as standard BLOSUM and PAM matrices. But so far they support constant gap penalty functions only.
Future versions may contain related algorithms such as multiple sequence alignment, database search and protein structure prediction.
Wow...Last but not least, NeoBio also provides a simple GUI and command line based tools to run the sequence alignment algorithms on DNA and protein sequences.
<<lessWhat algorithms? The current version consists mainly of (pairwise) sequence alignment algorithms such as the classical dynamic programming methods of Needleman & Wunsch (global alignment) and Smith & Waterman (local alignment).
Anything else? Yes, a more efficient approach, due to Crochemore, Landau and Ziv-Ukelson is also available.
It uses Lempel-Ziv compression to speed-up the computation of the dynamic programming matrix. It also relies on the SMAWK algorithm, due to Aggarwal et al., that computes all column maxima of a totally monotone matrix in linear time.
Hum... And all sequence alignment algorithms support simple scoring schemes as well as substitution matrices such as standard BLOSUM and PAM matrices. But so far they support constant gap penalty functions only.
Future versions may contain related algorithms such as multiple sequence alignment, database search and protein structure prediction.
Wow...Last but not least, NeoBio also provides a simple GUI and command line based tools to run the sequence alignment algorithms on DNA and protein sequences.
Download (0.10MB)
Added: 2006-10-30 License: GPL (GNU General Public License) Price:
1091 downloads
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