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Open Babel 2.0.2 / 2.1.1

Open Babel 2.0.2 / 2.1.1


Open Babel is a cross-platform chemistry program and library designed to convert file formats. more>>
Open Babel project is designed to pick up where Babel left off, as a cross-platform program and library designed to interconvert between many file formats used in molecular modeling and computational chemistry.
Main features:
- A huge variety of common chemical file formats, including SDF/MOL, Mol2, PDB, SMILES, XYZ, CML... (details)
- Recognition of file type based on filename extension
- Chemical MIME support
- SMARTS matcher
- Flexible atom typer
- Flexible bond typer for perception of multiple bonds from atomic coordinates
- Gasteiger partial charge calculation
- Hydrogen addition and deletion
- Isotope support, calculation of average and exact masses
- Automatic feature perception (rings, bonds, hybridization, aromaticity)
- Multiple conformer storage within molecules
- Command line conversion for multiple molecules in one file
- Command line interface
- Bitvector class
- Vector and matrix transformations
- Molecular test suite
- Open-source/Free Software under the GNU General Public License
- Cross platform (Windows, Linux, Mac OS X, SGI, Solaris, Dreamcast...)
Version restrictions:
- Generate coordinates for SMILES strings. (Meaning all coordinates will be zero when converting from a SMILES string.)
- Handle 2D->3D conversion (or vice versa).
- Handle a variety of important file formats.
Whats New in 2.1.1 Development Release:
- Improved scripting support, including dictionary-support for OBGenericData in pybel, casting from OBUnitCell, etc. Improved access to OBRings from OBMol.GetSSSR().
- Added support for descriptors (e.g., PSA, logP) from scripting interfaces.
- Added support for reading all PDB records (beyond current atom and bond connections). Records not handled directly by Open Babel are added as key/value pairs through OBPairData.
- Added a new configure flag --with-pkglibdir to allow Linux package distributors to define version-specific directories for file format plugins.
- Fixed a bug which would not output chirality information for canonical SMILES with 3D files.
- Fixed problems with new line-ending code. Now correctly reads DOS and old Mac OS files with non-UNIX line endings.
- Correctly rejects SMILES with incorrect ring closures. Thanks to Craig James for the report.
- Fixed a crash when output to canonical SMILES.
- Fixed a crash when converting from SMILES to InChI.
- Fixed a crash when reading some PDB files on Windows.
- Fixed a crash when reading invalid MDL/SDF files.
- Fixed a bug which made it impossible to read some GAMESS files.
- Fixed a problem when reading ChemDraw CDX files on Mac OS X.
- A large number of additional fixes, including some rare crashes.
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Added: 2007-07-08 License: GPL (GNU General Public License) Price:
527 downloads
Open BEAGLE 3.0.1

Open BEAGLE 3.0.1


Open BEAGLE is an evolutionary computation framework in C++. more>>
Open BEAGLE is a C++ Evolutionary Computation (EC) framework. It provides an high-level software environment to do any kind of EC, with support for tree-based genetic programming, bit string and real-valued genetic algorithms, and evolution strategy.
The Open BEAGLE architecture follows strong principles of object oriented programming, where abstractions are represented by loosely coupled objects and where it is common and easy to reuse code.
Open BEAGLE is designed to provide an EC environment that is generic, user friendly, portable, efficient, robust, elegant and free.
With Open BEAGLE, the user can execute any kind of EC, as far as it fulfills some minimum requirements. The only necessary condition is to have a population of individuals to which a sequence of evolving operations is iteratively applied.
So far, Open BEAGLE supports most mainstream EC flavors such genetic programming, bit string and real-values genetic algorithms, and evolution strategy. It also includes support for advanced EC techniques such multiobjective optimization and co-evolution.
The user can take any of these specialized frameworks and modify them further to create his own specialized flavor of evolutionary algorithms.
Main features:
User Friendliness
- Considerable efforts were deployed to make the use of Open BEAGLE as easy and pleasant as possible. Open BEAGLE possesses several mechanisms that offer a user friendly programming interface. For example, the memory management of dynamically allocated objects is greatly simplified by the use of reference counting and automatic garbage collection. The programming style promoted is high-level and allows rapid prototyping of applications.
Portability
- The Open BEAGLE code is compliant with the C++ ANSI/ISO 3 standard. It requires the Standard Template Library (STL). No specific call in the core libraries are made to the operating system nor to the hardware.
Efficiency
- To insure efficient execution, particular attention was given to optimization of critical code sections. Detailed execution profiles of these sections were done. Also, the fact that Open BEAGLE is written in C++ contributes to its overall good performance.
Robustness
- Many verification and validation statements are embedded into the code to ensure correct operation and to inform the user when there is a problem. Robust mechanisms for periodically saving the current evolution state have also been implemented in order to enable automatic restart of interrupted evolutions.
Elegance
- The interface of Open BEAGLE was developed with care. Great energy was invested in designing a coherent software package that follows good OO and generic programming principles. Moreover, strict programming rules were enforced to make the C++ code easy to read, understand and, eventually, modify. The use of XML as file format is also a central aspect of Open BEAGLE, which provide a common ground for tools development to analyze and generate files, and to integrate the framework with other systems.
Free Sourceness
- The source code of Open BEAGLE is free, available under the GNU Lesser General Public License (LGPL). Thus, it can be distributed and modified without any fee. (See section copyright for further details.
Enhancements:
- Several fixes to allow compilation on Mac OS X
- Fixes in headers inclusion to allow precompiled headers
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Added: 2005-10-10 License: LGPL (GNU Lesser General Public License) Price:
1477 downloads
Open LMS 1.0

Open LMS 1.0


Open LMS project consists of a learning management system. more>>
Open LMS project consists of a learning management system.
OpenLMS is a Learning Management System (LMS) made at the Department of Geography, NTNU.
The system is a fully functional LMS with support for group collaboration, file sharing, distribution of lectures, and other supporting features.
It is a good tool for distributing lecture notes to groups of students, and for facilitating collaboration for groups of students and teachers.
The system has successfully been used at the Dept. of Geography at NTNU in Trondheim Norway, for three years. It is continuously further developed and was released as OpenSource software last year.
OpenLMS now supports English (core language) and Norwegian. Steps has been taken to translate for further languages.
Scorm, Dublin Core, AICC etc. could be important factors in systems like OpenLMS and similar LMS/LCMS. Support for exporting objects for these standards will probably be incorporated into OpenLMS. HOWEVER - the focus of standards for the exchange of learning objects often overshadows the lack of a culture for sharing within the organizations in question.
This very resource-demanding part of a LMS/LCMS is therefore not focused at the present stage in the development.
Main features:
- upload lecture notes (any filetypes)
- distribute levture notes
- groupware / email to groups
- personal file archive
- assignment administration
- media archive and termbank
- organize webresources
- language support for norwegian, english and german (may easily be extended)
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Added: 2007-01-18 License: GPL (GNU General Public License) Price:
1012 downloads
Open Invaders 0.2

Open Invaders 0.2


Open Invaders is a GPL version of Space Invaders. more>>
Open Invaders is a fully-GPL interpretation of Taitos Space Invaders. While it is not a perfect clone, the aim of the project is to provide a feature rich clone of the famous arcade game. It features (so far) 14 levels with unique backdrops and a full soundtrack.

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Added: 2007-06-21 License: GPL (GNU General Public License) Price:
859 downloads
Open Tranquera 1.0

Open Tranquera 1.0


Open Tranquera is a repository of reusable components for J2EE application development. more>>
Open Tranquera is a repository of reusable components for J2EE application development.

There are UI extensions, Services, and a Persistence layer, integrated with existing open source frameworks.

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Added: 2006-07-07 License: GPL (GNU General Public License) Price:
1207 downloads
Open Steelball 0.5

Open Steelball 0.5


Open Steelball is a futuristic soccer game. more>>
Open Steelball project is a futuristic soccer game.

Open Steelball is an SDL game, which is similar to "SpeedBall" on the Amiga. It is a futuristic soccer game for one or two where 5 players can be controlled per side.

The ball can be passed, shot, lobbed, and other players can be tackled.

Goalkeepers are controlled automatically.

This is the First Alpha Release.

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Added: 2006-12-08 License: GPL (GNU General Public License) Price:
1060 downloads
open sTeam 2.3

open sTeam 2.3


open sTeam project is an environment for cooperative knowledge management. more>>
open sTeam project is an environment for cooperative knowledge management.

sTeam provides a technical platform which allows groups of students, lecturers, and any other groups to construct and arrange their individual and cooperative learning and working space.

It consists of an object-oriented server connected to a database, and Web, Java, and other (FTP, SMTP, IRC, etc.) clients.

The server is event-driven and manages all user objects as well as the communication between the connected clients.

Features that were different from most other cooperation tools is the self-organisation and self-administration by the members within the virtual environment.

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Added: 2006-10-09 License: GPL (GNU General Public License) Price:
1112 downloads
Open Beat Box 0.7.1

Open Beat Box 0.7.1


Open Beat Box (OBB) is an open-source beat box ( a virtual drum machine ). more>>
Open Beat Box (OBB) is an open-source beat box ( a virtual drum machine ).
We are still in an early stage of development but we aim full drum machine functionalities.
Main features:
- Highly customizable graphical interface, including bitmap skins and variable shape widgets.
- Floating tools : realy interesting with multi-screen.
- Skin aware help system that update the images acording to the skin you curently use.
- Plug-in architecture for sound effects.
- Portability : Windows, Mac, Unix
- Cross-platform file compatiblitily.
- Real-time preview and offline rendering for realy complex effect that cant be added real-time on your machine
- Distributed rendering over multiple computers.
- Customizable sound sample packages.
- Customizable keyboard shortcuts.
- Matel Power glove input driver.
Enhancements:
- Code major restructuration
- More performance
- Added XML Skins
- Gui enhancements (drop shadow on labels, centered spinbox label, mousescroll on slidebars)
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Added: 2005-08-18 License: GPL (GNU General Public License) Price:
1535 downloads
GPS::Babel 0.0.1

GPS::Babel 0.0.1


GPS::Babel is a Perl interface to gpsbabel. more>>
GPS::Babel is a Perl interface to gpsbabel.

SYNOPSIS

use GPS::Babel;

my $babel = GPS::Babel->new();

# Read an OZIExplorer file into a data structure
my $data = $babel->read(route.ozi, ozi);

# Convert a file automatically choosing input and output
# format based on extension
$babel->convert(points.wpt, points.gpx, { all => 1 });

# Call gpsbabel directly
$babel->direct(qw(gpsbabel -i saroute,split
-f in.anr -f in2.anr -o an1,type=road -F out.an1));

From http://gpsbabel.org/:

GPSBabel converts waypoints, tracks, and routes from one format to
another, whether that format is a common mapping format like
Delorme, Streets and Trips, or even a serial upload or download to a
GPS unit such as those from Garmin and Magellan. By flattening the
Tower of Babel that the authors of various programs for manipulating
GPS data have imposed upon us, it returns to us the ability to
freely move our own waypoint data between the programs and hardware
we choose to use.

As I write this gpsbabel supports 96 various GPS related data formats. In addition to file conversion it supports upload and download to a number of serial and USB devices. This module provides a (thin) wrapper around the gpsbabel binary making it easier to use in a perlish way.

GPSBabel supports many options including arbitrary chains of filters, merging data from multiple files and many format specific parameters. This module doesnt attempt to provide an API wrapper around all these options. It does however provide for simple access to the most common operations. For more complex cases a passthrough method (direct) passes its arguments directly to gpsbabel with minimal preprocessing.

GPSBabel is able to describe its built in filters and formats and enumerate the options they accept. This information is available as a perl data structure which may be used to construct a dynamic user interface that reflects the options available from the gpsbabel binary.

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Added: 2007-01-18 License: Perl Artistic License Price:
1011 downloads
Open Simp-X 2002 Beta

Open Simp-X 2002 Beta


Open Simp-X provides a scalable Internet management platform. more>>
Open Simp-X provides a scalable Internet management platform.

Open Simp-X is a powerful Internet platform for everyone, attempting to change programming for the Internet with sharing database information. It strives for scalablility, reliability, and ease of use.

The platform consists of a client/server pair. Security is a top priority, and data transfers are encrypted. Open Simp-X achieves scalability through plugins.

Plugins can collect information, manipulate it, and send it back to the database. Writing plugins is easy since they do not have to worry about how to send or receive their information, and can focus on manipulating it.

Open Simp-X can be set up to retreive data through a LAN or through a Web server.
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Added: 2007-03-07 License: LGPL (GNU Lesser General Public License) Price:
962 downloads
Open Java Console 1.6

Open Java Console 1.6


Open Java Console is an extension which provides the ability to open the Java Console in Firefox. more>>
Open Java Console is an extension which provides the ability to open the Java Console in Firefox.

This extension provides an option on the Tools menu that opens the Java Console, and a toolbar button in the JavaScript Console that also allows the console to be opened. The extension also adds the keystroke Ctrl+Shift+J to spawn the console from the keyboard, from either a browser window or the JavaScript Console.

New features in 1.0 include the addition of two preferences:

A preference for logging a message to the JavaScript Console whenever the Java Console is triggered

A preference for showing any exceptions generated by the browser when starting the Java Console

Mozilla 1.X has this feature, but Firefox does not, making access to the console difficult unless this extension is used.

When the Console^2 extension is installed, the Ctrl+Shift+J keystroke will trigger the Error Console instead of the Java Console from a browser window. Ctrl+Shift+J will still work from the Error Console.

The following languages have been added to the 1.6 release: Hungarian and Dutch.

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Added: 2007-04-28 License: MPL (Mozilla Public License) Price:
1006 downloads
OPEN BEXI HTML Builder 1.6

OPEN BEXI HTML Builder 1.6


OPEN BEXI HTML Builder is a WYSIWYG HTML editor. more>>
OPEN BEXI HTML Builder is a WYSIWYG HTML editor which allows you to create Web pages and generate HTML code from your browser without any HTML knowledge.

It lets you create, update, and remove HTML components. OPEN BEXI HTML Builder is suitable for beginners and experts.
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Download (1.8MB)
Added: 2007-04-05 License: GPL (GNU General Public License) Price:
939 downloads
Open Source in Tab 1.5

Open Source in Tab 1.5


Open Source in Tab is an extension which opens the pages source file in a new tab. more>>
Open Source in Tab is an extension which opens the pages source file in a new tab.

Opens the pages source file in a new tab. Has a preference to either open source in a new tab or existing tab.

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Added: 2007-04-19 License: MPL (Mozilla Public License) Price:
550 downloads
Open Dice Language 1.5

Open Dice Language 1.5


Open Dice Language project is a language for describing dice rolls. more>>
Open Dice Language project is a language for describing dice rolls.

Open Dice Language is a language for describing dice rolls.

The language is nearly identical to what you see in most role-playing game texts (e.g., "1d20"). It provides several interfaces to the language.

To run in CLI interface mode:

# pushd $ODL_HOME
# java -jar ODL.jar

To run as Widget:

build using `ant widget`
widget is now installed in users widget directory

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Added: 2007-01-08 License: BSD License Price:
1019 downloads
Open Partly Copied 1.0

Open Partly Copied 1.0


Open Partly Copied is a service menu that allows by one-click start copying video file from remote storage to local directory. more>>
Open Partly Copied is a service menu (+ shell-script included) allows by one-click start copying video file from remote storage to local directory and immediately open partially copied file with your default player.

Its necessary if movie plays with delays on direct opening.

After watching movie you may delete copied file by click Yes on dialog box.

Installation instructions:

Its easy. Archieve containts install.sh script. So extract archieve to temp directory and run install.sh
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Added: 2007-04-02 License: GPL (GNU General Public License) Price:
935 downloads
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