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MP-MPICH 1.4.0

MP-MPICH 1.4.0


MP-MPICH provides a Multi-platform MPI implementation. more>>
MP-MPICH provides a Multi-platform MPI implementation.

MP-MICH is a Multi-platform uniform MPI implementation, based on MPICH and SCI-MPICH, resulting in a high performance, consistent MPI across both ethernet and SCI networks in a hybrid environment. There is a single, standardized source tree for all platforms. It is compliant with the MPI-1 standard.

MP-MPICH uses one common source tree for this purpose. It has a new device for Windows NT/2000/2003 to communicate via sockets, and an adapted shared memory device for SMP systems. Additionally, MP-MPICH is a superset of SCI-MPICH, that means that it includes another new device to support direct communication via a fast SCI interconnect. With SCI-MPICH, inter-process message latencies for small messages (for processes running on separate nodes) below 4 us are achieved, and the current measured maximum inter-node (PingPong-)bandwidth is at about 310 MB/s.

In fact, the development of MP-MPICH started when the first release of SCI-MPICH was finished. This release was designed for Solaris and Linux, but since it uses our SMI library which is also available for Windows NT, we thought it would be fun to port SCI-MPICH to NT. The initial port took only 4 hours and we were up and running with SCI-MPICH for NT. The additional/modified devices which are necessary to use MPICH on NT without these extremely fast SCI boards required more time to develop.

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Added: 2007-03-02 License: BSD License Price:
977 downloads
MPICH2 1.0.5p4

MPICH2 1.0.5p4


MPICH is a robust and flexible implementation of the MPI (Message Passing Interface). more>>
MPICH2 is a robust and flexible implementation of the MPI (Message Passing Interface). Message Passing Interface is often used with parallel or distributed computing projects.

MPICH2 is a multi-platform, configurable system (development, execution, libraries, etc) for MPI. It can acheive parallelism using networked machines or using mulitasking on a single machine.

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Added: 2007-08-09 License: Freely Distributable Price:
816 downloads
MPICH 1.0.0 Beta

MPICH 1.0.0 Beta


MPICH is a robust and flexible implementation of the MPI (Message Passing Interface). more>>
MPICH (MVAPICH2) software delivers best performance, scalability and fault tolerance for high-end computing systems and servers using InfiniBand, iWARP and other RDMA-enabled interconnect networking technologies. This software is being used by more than 540 organizations world-wide (Current Users) to extract the potential of these emerging networking technologies for modern systems. This software is also being distributed by many InfiniBand, iWARP and RDMA-enabled interconnect vendors in their software distributions. MVAPICH and MVAPICH2 are also available with Open Fabrics Enterprise Distribution (OFED) stack.
MVAPICH software is powering several supercomputers in the TOP 500 list. Examples (from the June 07 ranking) include:
- 15th, 5848-core Dell PowerEdge Intel EM64T 2.66 GHz cluster at Texas Advanced Computing Center/Univ. of Texas
- 19th, 9216-core Appro Quad Opteron dual Core 2.4 GHz at Lawrence Livermore National Laboratory
- 71st, 2200-processors Apple Xserve 2.3 GHz cluster at Virginia Tech
Enhancements:
- New message coalesing, hot-spot avoidance, application-initiated systems-level checkpointing, APM support, multi-rail support for iWARP, on-demand connection management for iWARP and uDAPL (including Solaris), RDMA read, and blocking support.
- The software was also updated to MPICH2 1.0.5p4.
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Added: 2007-08-14 License: BSD License Price:
492 downloads
GridMPI 1.1

GridMPI 1.1


GridMPI is a new open-source free-software implementation of the standard MPI library. more>>
GridMPI is a new open-source free-software implementation of the standard MPI (Message Passing Interface) library designed for the Grid. GridMPI project enables unmodified applications to run on cluster computers distributed across the Grid environment.
GridMPI team found that it is feasible to connect cluster computers and to run ordinary scientific applications in distance upto 500 miles. Simple experiment has shown that most MPI benchmarks scale fine upto 20 millisecond round-trip latency which corresponds to about 500 miles in distance, when the clusters are connected by fast 1 to 10 Gbps networks. 500 miles covers the major cities between Tokyo--Osaka in Japan.
Thus, applications which are too large to run on a local cluster should run on multiple clusters in the Grid environment with acceptable performance. However, it is only feasible when using an efficient MPI implementation [1]. Existing implementations are not efficient enough mainly because of the two reasons: their focus on security features and TCP performance problems.
GridMPI skips security layers assuming dedicated secure links. The institutes housing large clusters tend to have their own networks to connect to other institutes in most cases. GridMPI so focuses on the performance on TCP. Since existing implementations are in most cases designed for MPP machines and recently clusters with special hardware, their performance on TCP with Ethernet is not optimal.
Also TCP performance itself is not optimal for the work load of the MPI traffic. In addition, support for heterogeneous combinations of computers of the existing MPI implementations is not satisfactory. Thus, GridMPI is designed and implemented from the scratch. GridMPI is carefully coded and tested with heterogeneity in mind.
Main features:
- Full conformance to the standard: GridMPI passes 100% of the functional tests of the large test suites from ANL and Intel (MPI-1.2 level).
- Full heterogeneity support: GridMPI is fully tested with combinations of processors of 32bit/64bit and big/little-endian.
- Primary support of TCP/IP and sockets: GridMPI is written from scratch and it is new and clean. It is efficient with sockets, and thus suitable for the Grid as well as ordinary Ethernet-based clusters.
- Cooperation with Grid job submission: GridMPI can be used with Globus, Unicore, tool from NAREGI project, etc.
- Checkpointing support: GridMPI supports checkpointing on Linux/IA32 platforms to restart long-running applications from failure.
- Vendor MPI support: GridMPI supports IBM-MPI, Fujitsu-Solaris-MPI, Intel-MPI, and any MPICH-based MPI for clusters with special communication hardware.
Enhancements:
- Minor bugfixes were made.
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Added: 2006-06-13 License: The Apache License Price:
1228 downloads
MPI Ruby 0.3

MPI Ruby 0.3


MPI Ruby is a Ruby binding of MPI. more>>
MPI Ruby is a Ruby binding of MPI. MPI Rubys primary goal in making this binding was to make the power of MPI available to Ruby users in a way that fits into the languages object oriented model.
In order to do this, the buffer and datatype management necessary in the C, C++, and Fortran bindings have been removed. What this means is that MPI Ruby allows you to treat objects as messages.
MPI Ruby also aims to be a complete binding to MPI in that it offers access to nearly all functionality of MPI. While there is not a one-to-one correspondence to functions and constants in the Ruby and C/C++/Fortran bindings, all of the communication and topology features are available.
There are fewer methods in the Ruby binding than there are functions in the C/C++/Fortran bindings, but this is mainly due to the fact that the programmer no longer needs to deal with buffers and datatypes.
Enhancements:
- examples/irecv.rb: Removed sleep from irecv example
- configure: Removed configure
- examples/Makefile.am: Added op example to Makefile
- examples/redsubmit.rb, examples/op.rb, examples/redhalt.rb, examples/red.rb:
New examples:
User-defined operations
Ruby Execution Daemon (red).
- src/ops.rb, src/main.c, src/mpi.c, src/mpi_comm.c, src/mpi_group.c, src/mpi_keyval.c, src/mpi_op.c, src/mpi_op_fns.c, src/mpi_request.c:
Fixed all of the rb_str_new2()s that were causing marshalling problems.
Fixed defines of singleton methods.
Fixed dims_create()
Now works with MPICH because of atexit(MPI_Finalize)
Set the MPI error handler
Fixed operators in MPI::Group (+ -> | and ^ -> &)
- examples/Makefile.am: New examples.
- docs/rd/mpi_group.rd, docs/rd/mpi_keyval.rd, docs/rd/mpi_op.rd, docs/rd/mpi_ruby.rd, docs/rd/mpi_comm.rd, docs/man/man3/Makefile.am, docs/man/man3/mpi_comm.3, docs/man/man3/MPI_Ruby.3, docs/man/man3/MPI_Status.3, docs/man/man3/MPI_Exception.3, docs/man/man3/MPI_Group.3, docs/man/man3/MPI_Keyval.3, docs/man/man3/MPI_Op.3, docs/man/man3/MPI_Request.3, docs/man/man3/MPI_Comm.3:
Doc updates to reflect fixes to singleton methods in several classes.
Typos fixed.
- docs/man/man1/mpi_ruby.1, docs/man/man1/Makefile.am:
Short doc on the interpreter itself (how to run)
- docs/man/Makefile.am: Added man1
- docs/html/index.html, docs/html/mpi_comm.html, docs/html/mpi_group.html, docs/html/mpi_keyval.html, docs/html/mpi_op.html, docs/html/mpi_ruby.html:
Doc updates to reflect fixes to singleton methods in several classes.
Typos fixed.
- configure, configure.in: Bumped to 0.3
Added man1/Makefile to output
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Added: 2006-05-31 License: Freely Distributable Price:
1242 downloads
ParallelKnoppix 2.7

ParallelKnoppix 2.7


ParallelKnoppix is a remastered edition of Knoppix. more>>
ParallelKnoppix is a remaster of the Knoppix live CD distibution of GNU Linux that allows setting up a cluster of machines for parallel processing using the LAM-MPI and/or MPICH implementations of MPI.

You can convert a room full of machines running Windows into a Linux cluster, and when you shut down, your Windows machines are in their original state. The computers in the cluster can be homogeneous or heterogeneous.

Getting the cluster up and running takes about 5 minutes, if the machines have PXE network cards. Clusters from 2 to 200 machines are supported.
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Added: 2007-07-13 License: GPL (GNU General Public License) Price:
841 downloads
ParallelKnoppix64 2.6

ParallelKnoppix64 2.6


ParallelKnoppix is a remastered edition of KNOPPIX that allows setting up a cluster of machines for parallel processing. more>>
ParallelKnoppix is a remastered edition of KNOPPIX that allows setting up a cluster of machines for parallel processing using the LAM-MPI and/or MPICH implementations of MPI.

Getting the cluster up and running takes less than 15 minutes, if the machines have PXE network cards. Starting from version 2.2, the distribution is based on Debians unstable branch, rather than KNOPPIX.
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Added: 2007-05-23 License: GPL (GNU General Public License) Price:
884 downloads
Parallel Bladeenc 0.92.1b5

Parallel Bladeenc 0.92.1b5


Parallel Bladeenc is a true parallel version of the Bladeenc MP3 encoder. more>>
Parallel Bladeenc is a true parallel version of the Bladeenc MP3 encoder; it distributes work across CPUs to speed up MP3 encoding. It uses the Message Passing Interface (MPI) for parallelization across SMPs and/or multiple machines. Hence, if you have a 4-way SMP, you can encode your MP3s about 4 times as fast as the regular Bladeenc; if you have two 4-way SMPs, you can encode about 8 times as fast.
The difficult part about parallelization is typically about how to split the problem up into independent (or nearly independent) parts. The structure shown above - assuming that the encode() function was independent of previous calls to encode() - is trivial to parallelize.
For example, if we want to run on four machines, we can split the input file into four parts, give 1/4 of the file to each machine, and let each machine loop over encode() for their portion of the file. Then take the output from each machine, put it in the right order, and write it out to a single output file. Done.
With such a scheme, the more work that you throw at it, the more efficient it will become.
Hence, trying this scheme with small MP3 files will probably not result in any noticeable speedup (in fact, it may be slower than running in serial, because of the added overhead for working in parallel). It is necessary to give the parallel engine enough work to offset the overhead added by the parallel framework. Generally, this is not very much overhead (read on to find out why), but parallel is not free.
Enhancements:
- Fixed minor error that caused an error message from MPICH when shutting down. Thanks to Gary Smith for pointing this out.
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Added: 2006-07-18 License: LGPL (GNU Lesser General Public License) Price:
1193 downloads
BioBrew Linux 3.0.2.04

BioBrew Linux 3.0.2.04


BioBrew Linux is an open source Linux distribution based on the NPACI Rocks cluster software and enhanced for bioinformaticists. more>>
BioBrew Linux is an open source Linux distribution that is enhanced for life scientists. It is customized for cluster and bioinformatics computing. It automates cluster installation, includes all the HPC software a cluster enthusiast needs, and contains popular bioinformatics applications.

BioBrew Linux is an open source Linux distribution based on the NPACI Rocks cluster software and enhanced for bioinformaticists and life scientists. While it looks, feels, and operates like ordinary Red Hat Linux, BioBrew Linux includes popular cluster software e.g. MPICH, LAM-MPI, PVM, Modules, PVFS, Myrinet GM, Sun Grid Engine, gcc, Ganglia, and Globus, *and* popular bioinformatics software e.g. the NCBI toolkit, BLAST, mpiBLAST, HMMER, ClustalW, GROMACS, PHYLIP, WISE, FASTA, and EMBOSS.

It runs on everything from notebook computers to large clusters. BioBrew Linux for the Itanium architecture is only available for purchase at this time through Callident. Please contact Brewmeister Glen Otero for information regarding BioBrew Linux on Itanium.
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Download (1980MB)
Added: 2005-05-18 License: GPL (GNU General Public License) Price:
1622 downloads
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