Free molecular probes software for linux

THC-Probe is the ultimate host scanner compilation for Linux, featuring nmap, snmpscan, netbios auditing tool and super-cool vh shell script.

INSTALL: just run "make install". Everything will be installed in /usr/local

RUN: just run "netprobe" and see the options.

Every host scanned will be saved as a "host.bla.com.probe" file in your current directory.

It does many stuff like snmp guessing, samba pw guessing and information gathering.

Nothing great and big, but it suits my needs.

MRTG-eth-probe provides a probe for the Multi Router Traffic Grapher, generating statistics for network devices that do not support the SNMP protocol. It reads interface stats from /proc/net/dev (or some other file you configure), and generates an output readable for MRTG by parsing the file.
Since the starting of this project MRTG-eth-probe has been downloaded more than 1700 times (as of 2001-11-04). Thanks for this go first of all to Freshmeat for accepting the project and for redirecting so much people to my sourceforge projectpage Additional thanks go to Michael Feger for sending me a patch to 1.5.2 which makes up the most important changes of this release.
Enhancements:
- bugfix: missing dot

mrtg-ntap-probe can probe for Network Appliance NetCache caching appliance and NetApp Filer.

mrtg-ntap-probe retrieves the disk and file (inode) utilization by volume or quota tree name, so you do not need to find the right OID, which might change over time as you add and/or remove volumes and quota trees.

You need a recent release of mrtg 2.x, perl 5.003 or better, a NetApp NetCache appliance with NetCache release 5.1 or better and/or a Network Appliance Filer running Data Ontap 6.0 or better.

If you have a Network Appliance service contract and access to their software tools library on now.netapp.com, you should also take a look at their mrtg-filer and mrtg-netcache packages!

mrtg-ping-probe project monitors round trip time and packet loss to another host. Still on my TODO list: add own min/max/avg rtt calculation, add perl ping module, add rping and rsh support...
mrtg-ping-probe is a ping probe for MRTG 2.x. It is used to monitor the round trip time and packet loss to networked devices. MRTG uses its output to generate graphs visualizing minimum and maximum round trip times or packet loss.
mrtg-ping-probe depends on the following software being installed on your system: perl (at least version 5.6.1), mrtg (I use version 2.8.8, though any mrtg 2.x version should work), and a ping program that displays a summary of the round trip times upon termination or timeout.
mrtg-ping-probe runs on AIX, BSD/OS 2.1, FreeBSD/2.2.x, IRIX/6.2, Linux, Mac OS X (Darwin 5.4), NetBSD, OpenBSD, OS/2, OSF1 V3.2, Solaris 1.1.2 (SunOS 4.1.4), Solaris 2.5.1 (SunOS 5.5.1), Solaris 7 (SunOS 5.7), Solaris 8 (SunOS 5.8), Solaris 9 (SunOS 5.9), HP-UX 9, Windows 98, and Windows 2000 (english, french, portugesee, and spanish locales).
If you install the Windows ping program that comes with Windows 98, Windows 2000, or WinSock 2.x, mrtg-ping-probe will also run on Windows 95 and Windows 4.0.
Support for additional systems is usually easy to add, as described in the file INSTALL.
Act responsible: do not use mrtg-ping-probe to ping devices without the owners permission. Just imagine 10,000 people would decide to ping your hosts ... mrtg-ping-probe is meant to be used within your network to get round trip time performance figures for your network.
Usage: mrtg-ping-probe [-hsvV] [-d deadtime] [-k count] [-l length] [-o ping_options] [-p [factor*]{min|max|avg|loss|integer}/[factor*]{min|max|avg|loss|integer}] [-r [rsh:][user@]host[:osname]] [-t timeout] host
Enhancements:
- new platforms supported: italian Windows 2000 locale.
- bugfixes: on Windows actually return deadtime when we lost all packets, not 0. the ping child process should actually be killed now on Unix platforms.
- changes: ***** Possible Incompatability ***** raised minimum required perl version to 5.6.1. lots of typos fixed.

PyMOlyze project can analyze the results of quantum chemistry (DFT) calculations. Gaussian 03 and Jaguar 6.0 files are supported.
The following analyses are available for user-defined molecular fragments:
- Mulliken Population Analysis (MPA)
- C-squared Population Analysis (SCPA)
- Density of States (DOS) plots
- Overlap Population Analysis
- Overlap Population DOS
PyMOlyze was inspired by AOMix, which is a console-based, Windows-only program that has features including (and in addition to) those listed above. I wrote PyMOlyze because I wanted a user-friendly Linux program to do MPA for each molecular orbital of Gaussian calculations. If PyMOlyze doesnt address your needs, check out AOMix (or shoot me an email and well talk).
Python, the python extensions to Qt and Qwt (PyQt and PyQwt), and some C++ functions (for speed optimizations) were used to create PyMOlyze; therefore it should run on pretty much any modern platform with minor modifications. It has only been tested on Windows XP, Windows 2000, and Gentoo Linux, but there is no reason for it not to be supported on any platform with python, PyQt, and PyQwt available.
Enhancements:
- OpenGL 3D rendering
- Atom is highlighted in 3D when choosing an atom/orbital for population analysis
- Observe structural changes during an optimization
- Cartesian coordinate editor (any step of the optimization)
- Functions for translating or rotating a molecule
- Center molecule on an atom
- Rotate molecule so that two atoms are along an axis
- Rotate moelcule so that three atoms lie in a plane
- Save structures as XYZ, PDB, internal coordinates, etc.
- Charge Decomposition Analysis (using the method developed by Frenking et al.)
- Fragment Analysis to study bonding interactions by determining contributions of fragment MOs to molecular MOs

Dynamic Probe Class Library (DPCL) is an object-based C++ class library that provides the necessary infrastructure to allow tool developers and sophisticated tool users to build parallel and serial tools through technology called dynamic instrumentation.
Dynamic Probe Class Library takes the basic components needed by tool developers and encapsulates them into C++ classes. Each of these classes provide the member functions necessary to interact and dynamically instrument a running application with software patches called probes.
Dynamic instrumentation provides the flexibility for tools to insert probes into applications as the application is running and only where it is needed.
Enhancements:
- This version is a minor update to DPCL that fixes a couple problems that have been reported since the v3.4.2 release