Free mass software for linux

Mass Rotate is a program that quickly and losslessly rotates JPEGs.

Its useful for rotating images from digital cameras. Uses jpegtran from from the Independent JPEG Group. Written in gtk2-perl.

Usage:

mass_rotate.pl dir_with_images/

or:

mass_rotate.pl image1.jpg image2.jpg image3.jpg ...

or:

mass_rotate.pl dir/ img.jpg other_dir/ whatever.jpg you_get_the_idea/

ID3 mass tagger is a portable command-line mass tagger for audio files.
ID3 mass tagger is designed for non-interactively adding, updating or removing meta-information in a number of files with a single command.
It can generate tag fields from the filename and rename files using an intuitive syntax. It currently supports ID3 (1.1) and ID3v2 (2.0, 3.0) tags.
Exemple:
Here are some examples of using id3:
id3 -a "Stallman" -t "Free Software Song" fs_song.mp3"
Add a simple tag to a file.
id3 -d *.mp3
Removes all ID3v1 tags from all mp3s
id3 -g "psych rock" *.mp3
Sets genre to "Psychedelic Rock" all mp3s
id3 -2 -1 -u "*.mp3"
Copy ID3v2 tag to ID3v1 tag in all files.
id3 -a "TAFKAT" -n "%1" -t "%+2" "*. *.mp3"
Update tag fields similar to this;
id3 -a "TAFKAT" -n "01" -t "My Song" "01. my_song.mp3"
id3 -a "TAFKAT" -n "02" -t "Untitled" "02. untitled.mp3"
id3 -2 -f "%a - %t.mp3" blaet.mp3
Rename file to a standard "Artist - Title" format, using ID3v2 values.
id3 -g "alt rock" -a "The Author" -l %1 -n %2 -t %3 "Author - */(*) *.mp3"
Process multiple directories at once.
id3 -g "alt rock" -a "The Author" -m "Author - %l/(%n) %t.mp3"
Shorthand for the previous example.
id3 -a %t -t %a "*.mp3"
Swap artist and title fields in all mp3s.
id3 -D source.mp3 -1 -2 dest.mp3
Copy ID3v1 and ID3v2 tags of source.mp3 to dest.mp3
id3 -D source.mp3 -1u -2u dest.mp3
As above, but only replaces the non-standard or blank fields in dest.mp3 by data from source.mp3.
id3 -2 -rAPIC -s 0 *.mp3
Removes embedded images and padding from all mp3s.
id3 -2 -rAPIC -s 0 -R "*.mp3" "/my documents"
As above, but works recursively on all mp3s in the directory tree starting at /my documents
id3 -2 -q "%| %a - %|Untitled|t || %t || %1 |?" "*.mp3"
Generate a playlist, using the best possible text
id3 -2 -c "Was: %_f" -f "%a - %|Untitled (%#x)|t.mp3" "*.mp3"
Advanced rename. Saves previous filename in the comment field, and renames files without proper tags to;
Unknown - Untitled (01).mp3
Unknown - Untitled (02).mp3
... etc
Enhancements:
- This release adds support for Lyrics3 tags.

MassSpec::CUtilities is a Perl extension containing C utilities for use in mass spectrometry.

SYNOPSIS

MassSpec::CUtilities is an XS module so theres a chance that you or your target user might not get it to install cleanly on the target system; therefore its recommended to make its presence optional and to offer slower-performing Perl equivalents where practical.

Also note that this module uses a 19-letter amino alphabet rather than the traditional 20-letter alphabet, since the isobars Leucine(L) and Isoleucine(I) are represented instead by "X." Furthermore some portions of this module assume that their input peptides are internally in alphabetical order.

my $haveCUtilities;
if (eval require MassSpec::CUtilities) {
import MassSpec::CUtilities;
$haveCUtilities = 1;
} else {
$haveCUtilities = 0;
}
if ($haveCUtilities) {
my $candidate = MassSpec::CUtilities::encodeAsBitString("ACCGT");
my @shortPeptides = ("ACT","CCGM","ACCGTY","CCT");
my (@list,@answer);
foreach $_ (@shortPeptides) {
push @list, MassSpec::CUtilities::encodeAsBitString($_);
}
if (MassSpec::CUtilities::testManyBitStrings($candidate,@shortPeptides,@list,@answer)) {
# should print "ACT" and "CCT" only
print "Matched: " . join(,,@answer) . "n";
}
}

see API documentation for other available subroutines

ABSTRACT

An eclectic mix of C utilities originally used in a mass spectrometry denovo sequencing project at NIH. It includes a fast Huffman decoder suitable (with minor modifications) for use with the CPAN module Algorithm::Huffman, as well as a fast peptide mass calculator and methods for encoding peptides as products of prime numbers or as bitmaps.

An eclectic mix of C utilities originally used in a mass spectrometry denovo sequencing project at NIH. It includes a fast Huffman decoder suitable (with minor modifications) for use with the CPAN module Algorithm::Huffman, as well as a fast peptide mass calculator and methods for encoding peptides as products of prime numbers or as bitmaps.

massXpert mass spectrometry package is a mass spectrometry environment for linear (bio-) polymers. It inherits all the innovations of GNU polyxmass, as it is a port of that project to a cross-platform development environment.
Enhancements:
- A feature was added whereby, upon definition of a monomer chemical modification, the user might tell which monomers are targets of that modification.
- If the user tries to modify a monomer with a modification that cannot be used for that, she is alerted.
- A mechanism overriding the modification target limitations is available for maximum flexibility.
- Bugs related to the chemical modification of polymer sequences were fixed.
- The user manual was updated to document the new features.

MassCalculator is a Perl module that implements common mass computations in mass spectrometry.

SYNOPSIS

use InSilicoSpectro::InSilico::MassCalculator;
InSilicoSpectro::InSilico::MassCalculator::init(insilicodef.xml);

MassCalculator Perl library is intended to support common mass spectrometry-related computations that must be routinely performed by bioinformaticians dealing with mass spectrometry data.

To accommodate as many as possible user requirements, we decided to both support a classical procedural programming model and an object oriented model. Per se MassCalculator is not designed as an object oriented code but we provide a series of elementary classes for modeling proteins, peptides, enzymes, etc. which MassCalculator is compatible with. Moreover, the latter classes are rather simple and neutral in their design such that they should fit, after further derivations eventually, a large range of code design.

We decided not to use Perl object oriented programming to stay with relatively naive and simple code and to allow everybody to decide how to include it in its own project. Nonetheless, MassCalculator is able to deal with Perl objects we provide additionally to represent protein sequences, peptides, enzymes, mass lists, and fragmentation spectra, see their respective documentations.
MassCalculator is released under the LGPL license (see source code).

mod_vhost_hash_alias is an Apache HTTPD module that allows mass hosting with good distribution across a unified directory namespace.

Administrators no longer have to use complex regexps with mod_rewrite, since they can use mod_vhost_hash_alias to do a better job and use fewer resources.

mod_vhost_hash_alias is a component of the VHFFS hosting platform which is used by the Web hosting provider Tuxfamily.org.

Configuration

#
# Request the module
#
LoadModule vhost_hash_alias_module mod_vhost_hash_alias.so

#
# mod_vhost_hash_alias have to be enabled for each virtual host (catch-all)
#
HashEnable On

#
# Digest algorithm to use:
# CRC32, ADLER32, MD5, SHA1, SHA256, or other types
# supported by the module and libmhash
#
HashType md5

#
# The output encoding (rfc3548) of hash result
# hexa, base16_low, base16_up, base32_low, base32_up, base64_ufs,
#
HashEncoding base16

#
# Number of characters to use to build the document root
# The hash string is truncated to this length
#
HashLimit 8

#
# Splitting scheme
# Specify the size of each chunk of the digest string
# The last count is taken until the end of string is reached
#
HashSplit 1 1 3

#
# The base directory used to build the document root
# (mandatory)
#
HashDocumentRootPrefix /var/lib/www

#
# A directory added to the final built root
# (optionnal)
#
HashDocumentRootSuffix htdocs

#
# A list of host prefix to strip
# eg: this handle basic web aliasing
# http://www.example.com/
# will point on the same document root than
# http://example.com/
#
# (optionnal)
#
HashAddAliasPrefix www ftp

#
# A prefix to add to the server name before it will be hashed
# Act like a salt and must be keeped secret to be efficient
#
# (optionnal)
#

phpMMS is a webbased frontend for XMMS or mplayer in the beta version. phpMMS project is Open Source Software (GPL-2), developed and given to the community by MaasOnline, and the-erm.com.
With phpMMS, you can control your XMMS player from every browser, or rate your songs used by rphpMMS. It allows you to control your XMMS, no matter if its running on your webserver or on any other computer connected to the internet. phpMMS depends on the iNetCtl XMMS plugin.
To use phpMMS, you need a webserver (tested with Apache 1.x and 2.x) with PHP (version 4, should work with version 5) and GD (version 1.x or 2.x) support.
phpMMS supports multiple skins, if youve designed a new skin and want to include it in the next phpMMS version, thesurfer, or Erm. Please note there are 2 versions of phpMMS on sourceforge. One is designed for rphpMMS, and one is not.
Main features:
- Search your music collection.
- Que songs
- Trash can to get rid of those songs all admins rates a 0.
- Set all genres in the playlist easily and quickly.
- Set all of a specific artist genre.
- Mass rate an artist.
- Set Que only specific ratings
- Set Que only specific genres
- Save genre lists
- Turn listeners on or off
- back, next, jump, remove songs.
- Rate