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Bio::NEXUS::WeightSet 0.67
Bio::NEXUS::WeightSet is a Perl module that represents column weights in alignment ( for each character). more>>
Bio::NEXUS::WeightSet is a Perl module that represents column weights in alignment ( for each character).
SYNOPSIS
new Bio::NEXUS::WeightSet($name, @weights, $iswt);
A module representing column weights in alignment (for each character)
METHODS
new
Title : new
Usage : $node = new Bio::NEXUS::WeightSet($name, @weights);
Function: Creates a new Bio::NEXUS::WeightSet object
Returns : Bio::NEXUS::WeightSet object
Args : none
set_weights
Title : set_weights
Usage : $weight->set_weights(@weights);
Function: stores it in the list weights
Returns : none
Args : list of weights
get_weights
Title : get_weights
Usage : @wts=@{$weightset->get_weights()};
Function: Returns the weights array
Returns : reference to array containing weights
Args : none
select_weights
Title : select_weights
Usage : $set->select_weights($columns);
Function: select a subset of characters
Returns : new self with subset of weights
Args : column numbers
is_wt
Title : is_wt
Usage : croak unless $weight->is_wt();
Function: Returns if object has weights (1 yes, 0 no)
Returns : weight existence (integer)
Args : none
set_name
Title : set_name
Usage : $weight->set_name($name);
Function: Sets the name of the weightset
Returns : none
Args : name (string)
get_name
Title : get_name
Usage : $name=$weight->get_name();
Function: Returns the name of the weightset
Returns : name (string)
Args : none
equals
Name : equals
Usage : $set->equals($another);
Function: compare if two WeightSet objects are equal
Returns : boolean
Args : an WeightSet object
<<lessSYNOPSIS
new Bio::NEXUS::WeightSet($name, @weights, $iswt);
A module representing column weights in alignment (for each character)
METHODS
new
Title : new
Usage : $node = new Bio::NEXUS::WeightSet($name, @weights);
Function: Creates a new Bio::NEXUS::WeightSet object
Returns : Bio::NEXUS::WeightSet object
Args : none
set_weights
Title : set_weights
Usage : $weight->set_weights(@weights);
Function: stores it in the list weights
Returns : none
Args : list of weights
get_weights
Title : get_weights
Usage : @wts=@{$weightset->get_weights()};
Function: Returns the weights array
Returns : reference to array containing weights
Args : none
select_weights
Title : select_weights
Usage : $set->select_weights($columns);
Function: select a subset of characters
Returns : new self with subset of weights
Args : column numbers
is_wt
Title : is_wt
Usage : croak unless $weight->is_wt();
Function: Returns if object has weights (1 yes, 0 no)
Returns : weight existence (integer)
Args : none
set_name
Title : set_name
Usage : $weight->set_name($name);
Function: Sets the name of the weightset
Returns : none
Args : name (string)
get_name
Title : get_name
Usage : $name=$weight->get_name();
Function: Returns the name of the weightset
Returns : name (string)
Args : none
equals
Name : equals
Usage : $set->equals($another);
Function: compare if two WeightSet objects are equal
Returns : boolean
Args : an WeightSet object
Download (0.15MB)
Added: 2006-12-19 License: Perl Artistic License Price:
1039 downloads
Config::Fast 1.07
Config::Fast is an extremely fast configuration file parser. more>>
Config::Fast is an extremely fast configuration file parser.
SYNOPSIS
# default config format is a space-separated file
company "Supercool, Inc."
support nobody@nowhere.com
# and then in Perl
use Config::Fast;
%cf = fastconfig;
print "Thanks for visiting $cf{company}!n";
print "Please contact $cf{support} for support.n";
This module is designed to provide an extremely lightweight way to parse moderately complex configuration files. As such, it exports a single function - fastconfig() - and does not provide any OO access methods. Still, it is fairly full-featured.
Heres how it works:
%cf = fastconfig($file, $delim);
Basically, the fastconfig() function returns a hash of keys and values based on the directives in your configuration file. By default, directives and values are separated by whitespace in the config file, but this can be easily changed with the delimiter argument (see below).
When the configuration file is read, its modification time is first checked and the results cached. On each call to fastconfig(), if the config file has been changed, then the file is reread. Otherwise, the cached results are returned automatically. This makes this module great for mod_perl modules and scripts, one of the primary reasons I wrote it. Simply include this at the top of your script or inside of your constructor function:
my %cf = fastconfig(/path/to/config/file.conf);
If the file argument is omitted, then fastconfig() looks for a file named $0.conf in the ../etc directory relative to the executable. For example, if you ran:
/usr/local/bin/myapp
Then fastconfig() will automatically look for:
/usr/local/etc/myapp.conf
This is great if youre really lazy and always in a hurry, like I am.
If this doesnt work for you, simply supply a filename manually. Note that filename generation does not work in mod_perl, so youll need to supply a filename manually.
<<lessSYNOPSIS
# default config format is a space-separated file
company "Supercool, Inc."
support nobody@nowhere.com
# and then in Perl
use Config::Fast;
%cf = fastconfig;
print "Thanks for visiting $cf{company}!n";
print "Please contact $cf{support} for support.n";
This module is designed to provide an extremely lightweight way to parse moderately complex configuration files. As such, it exports a single function - fastconfig() - and does not provide any OO access methods. Still, it is fairly full-featured.
Heres how it works:
%cf = fastconfig($file, $delim);
Basically, the fastconfig() function returns a hash of keys and values based on the directives in your configuration file. By default, directives and values are separated by whitespace in the config file, but this can be easily changed with the delimiter argument (see below).
When the configuration file is read, its modification time is first checked and the results cached. On each call to fastconfig(), if the config file has been changed, then the file is reread. Otherwise, the cached results are returned automatically. This makes this module great for mod_perl modules and scripts, one of the primary reasons I wrote it. Simply include this at the top of your script or inside of your constructor function:
my %cf = fastconfig(/path/to/config/file.conf);
If the file argument is omitted, then fastconfig() looks for a file named $0.conf in the ../etc directory relative to the executable. For example, if you ran:
/usr/local/bin/myapp
Then fastconfig() will automatically look for:
/usr/local/etc/myapp.conf
This is great if youre really lazy and always in a hurry, like I am.
If this doesnt work for you, simply supply a filename manually. Note that filename generation does not work in mod_perl, so youll need to supply a filename manually.
Download (0.010MB)
Added: 2007-08-11 License: Perl Artistic License Price:
805 downloads
Build it Fast 0.4.1
Build it Fast is a PHP framework for developing Web applications quickly. more>>
Build it Fast (BIF) is a PHP Framework. It contains several classes that help you develop complex Web applications in a short amount of time.
It brings the concept of the widget to Web development. It features Cascade Skins and transparent session management.
Its meant to make PHP programers life much easier, and making better web applications.
<<lessIt brings the concept of the widget to Web development. It features Cascade Skins and transparent session management.
Its meant to make PHP programers life much easier, and making better web applications.
Download (2.1MB)
Added: 2005-05-05 License: GPL (GNU General Public License) Price:
1633 downloads
Weight Loss Recipe Book 3.1
Weight Loss Recipe Book is a free, online, community-built recipe book. more>>
Weight Loss Recipe Book is a free, online, community-built recipe book. Weight Loss Recipe Book contains everything you need to allow your web site visitors to submit recipes and everything your administrator needs to administer the recipes.
When a visitor submits a recipe, the recipe is added to a database and awaits approval from the administrator before being added to the public site.
Main features:
- Community built, meaning you just have to approve entries and watch your web site expand!
- Captcha validation to prevent automated entries into the recipe book.
- Complete administrator system - add administrators, recipe categories, manage recipes and more!
- Best of all, Weight Loss Recipe Book is totally free!
<<lessWhen a visitor submits a recipe, the recipe is added to a database and awaits approval from the administrator before being added to the public site.
Main features:
- Community built, meaning you just have to approve entries and watch your web site expand!
- Captcha validation to prevent automated entries into the recipe book.
- Complete administrator system - add administrators, recipe categories, manage recipes and more!
- Best of all, Weight Loss Recipe Book is totally free!
Download (0.061MB)
Added: 2006-05-08 License: Freeware Price:
1267 downloads
wxDownload Fast 0.6.0
wxDownload Fast (also known as wxDFast) is an open source download manager. more>>
wxDownload Fast (also known as wxDFast) is an open source download manager.
Besides that, it is a multi-threaded download manager. This means that it can split a file into several pieces and download the pieces simultaneously.
Created in C++ using the wxWidgets(wxWindows) library.
Main features:
- Faster downloads (with Segmented/Multi-threaded/Accelerated transfers)
- Download resuming (Pause and restart where you stopped)
- Download scheduling
- Organizes files you have already downloaded
- View server messages (HTTP, FTP, file://). No HTTPS support.
- Available in multiple languages and easily translated. Now available in Portuguese [Brazil], Spanish, English and German
- Connection to FTP servers which require a password
- Calculates the MD5 checksum of downloaded files so they can be easily verified
<<lessBesides that, it is a multi-threaded download manager. This means that it can split a file into several pieces and download the pieces simultaneously.
Created in C++ using the wxWidgets(wxWindows) library.
Main features:
- Faster downloads (with Segmented/Multi-threaded/Accelerated transfers)
- Download resuming (Pause and restart where you stopped)
- Download scheduling
- Organizes files you have already downloaded
- View server messages (HTTP, FTP, file://). No HTTPS support.
- Available in multiple languages and easily translated. Now available in Portuguese [Brazil], Spanish, English and German
- Connection to FTP servers which require a password
- Calculates the MD5 checksum of downloaded files so they can be easily verified
Download (MB)
Added: 2007-03-12 License: GPL (GNU General Public License) Price:
1181 downloads
Graph::Weighted 0.1301
Graph::Weighted is an abstract, weighted graph implementation. more>>
Graph::Weighted is an abstract, weighted graph implementation.
SYNOPSIS
use Graph::Weighted;
$g = Graph::Weighted->new(
data => [
[ 0, 1, 2, 0, 0 ], # A vertex with two edges.
[ 1, 0, 3, 0, 0 ], # "
[ 2, 3, 0, 0, 0 ], # "
[ 0, 0, 1, 0, 0 ], # A vertex with one edge.
[ 0, 0, 0, 0, 0 ] # A vertex with no edges.
]
);
$g = Graph::Weighted->new(
data => {
weight => {
a => { b => 1, c => 2 }, # A vertex with two edges.
b => { a => 1, c => 3 }, # "
c => { a => 2, b => 3 }, # "
d => { c => 1 }, # A vertex with one edge.
e => {} # A vertex with no edges.
}
foo => [
[ 1, 2, 3 ],
[ 4, 5, 6 ],
[ 7, 8, 9 ]
],
}
);
$g = Graph::Weighted->new(
data => $Math_Matrix_object,
retrieve_as => ARRAY,
);
$data = $g->weight_data;
$w = $g->graph_weight;
$w = $g->vertex_weight($v1);
$w = $g->vertex_weight($v1, $w + 1);
$w = $g->edge_weight($v1, $v2);
$w = $g->edge_weight($v1, $v2, $w + 1);
$vertices = $g->heaviest_vertices;
$vertices = $g->lightest_vertices;
$w = $g->max_weight; # Weight of the largest vertices.
$w = $g->min_weight; # Weight of the smallest vertices.
# Call the weight methods of the inherited Graph module.
$x = $g->MST_Kruskal;
$x = $g->APSP_Floyd_Warshall;
$x = $g->MST_Prim($p);
<<lessSYNOPSIS
use Graph::Weighted;
$g = Graph::Weighted->new(
data => [
[ 0, 1, 2, 0, 0 ], # A vertex with two edges.
[ 1, 0, 3, 0, 0 ], # "
[ 2, 3, 0, 0, 0 ], # "
[ 0, 0, 1, 0, 0 ], # A vertex with one edge.
[ 0, 0, 0, 0, 0 ] # A vertex with no edges.
]
);
$g = Graph::Weighted->new(
data => {
weight => {
a => { b => 1, c => 2 }, # A vertex with two edges.
b => { a => 1, c => 3 }, # "
c => { a => 2, b => 3 }, # "
d => { c => 1 }, # A vertex with one edge.
e => {} # A vertex with no edges.
}
foo => [
[ 1, 2, 3 ],
[ 4, 5, 6 ],
[ 7, 8, 9 ]
],
}
);
$g = Graph::Weighted->new(
data => $Math_Matrix_object,
retrieve_as => ARRAY,
);
$data = $g->weight_data;
$w = $g->graph_weight;
$w = $g->vertex_weight($v1);
$w = $g->vertex_weight($v1, $w + 1);
$w = $g->edge_weight($v1, $v2);
$w = $g->edge_weight($v1, $v2, $w + 1);
$vertices = $g->heaviest_vertices;
$vertices = $g->lightest_vertices;
$w = $g->max_weight; # Weight of the largest vertices.
$w = $g->min_weight; # Weight of the smallest vertices.
# Call the weight methods of the inherited Graph module.
$x = $g->MST_Kruskal;
$x = $g->APSP_Floyd_Warshall;
$x = $g->MST_Prim($p);
Download (0.011MB)
Added: 2007-08-07 License: Perl Artistic License Price:
812 downloads
Set::IntSpan::Fast 0.0.5
Set::IntSpan::Fast is a Perl module for fast handling of sets containing integer spans. more>>
Set::IntSpan::Fast is a Perl module for fast handling of sets containing integer spans.
SYNOPSIS
use Set::IntSpan::Fast;
my $set = Set::IntSpan::Fast->new();
$set->add(1, 3, 5, 7, 9);
$set->add_range(100, 1_000_000);
print $set->as_string(), "n"; # prints 1,3,5,7,9,100-1000000
The Set::IntSpan module represents sets of integers as a number of inclusive ranges, for example 1-10,19-23,45-48. Because many of its operations involve linear searches of the list of ranges its overall performance tends to be proportional to the number of distinct ranges. This is fine for small sets but suffers compared to other possible set representations (bit vectors, hash keys) when the number of ranges grows large.
This module also represents sets as ranges of values but stores those ranges in order and uses a binary search for many internal operations so that overall performance tends towards O log N where N is the number of ranges.
The internal representation used by this module is extremely simple: a set is represented as a list of integers. Integers in even numbered positions (0, 2, 4 etc) represent the start of a run of numbers while those in odd numbered positions represent the ends of runs. As an example the set (1, 3-7, 9, 11, 12) would be represented internally as (1, 2, 3, 8, 11, 13).
Sets may be infinite - assuming youre prepared to accept that infinity is actually no more than a fairly large integer. Specifically the constants Set::IntSpan::Fast::NEGATIVE_INFINITY and Set::IntSpan::Fast::POSITIVE_INFINITY are defined to be -(2^31-1) and (2^31-2) respectively. To create an infinite set invert an empty one:
my $inf = Set::IntSpan::Fast->new()->complement();
Sets need only be bounded in one direction - for example this is the set of all positive integers (assuming you accept the slightly feeble definition of infinity were using):
my $pos_int = Set::IntSpan::Fast->new();
$pos_int->add_range(1, $pos_int->POSITIVE_INFINITY);
<<lessSYNOPSIS
use Set::IntSpan::Fast;
my $set = Set::IntSpan::Fast->new();
$set->add(1, 3, 5, 7, 9);
$set->add_range(100, 1_000_000);
print $set->as_string(), "n"; # prints 1,3,5,7,9,100-1000000
The Set::IntSpan module represents sets of integers as a number of inclusive ranges, for example 1-10,19-23,45-48. Because many of its operations involve linear searches of the list of ranges its overall performance tends to be proportional to the number of distinct ranges. This is fine for small sets but suffers compared to other possible set representations (bit vectors, hash keys) when the number of ranges grows large.
This module also represents sets as ranges of values but stores those ranges in order and uses a binary search for many internal operations so that overall performance tends towards O log N where N is the number of ranges.
The internal representation used by this module is extremely simple: a set is represented as a list of integers. Integers in even numbered positions (0, 2, 4 etc) represent the start of a run of numbers while those in odd numbered positions represent the ends of runs. As an example the set (1, 3-7, 9, 11, 12) would be represented internally as (1, 2, 3, 8, 11, 13).
Sets may be infinite - assuming youre prepared to accept that infinity is actually no more than a fairly large integer. Specifically the constants Set::IntSpan::Fast::NEGATIVE_INFINITY and Set::IntSpan::Fast::POSITIVE_INFINITY are defined to be -(2^31-1) and (2^31-2) respectively. To create an infinite set invert an empty one:
my $inf = Set::IntSpan::Fast->new()->complement();
Sets need only be bounded in one direction - for example this is the set of all positive integers (assuming you accept the slightly feeble definition of infinity were using):
my $pos_int = Set::IntSpan::Fast->new();
$pos_int->add_range(1, $pos_int->POSITIVE_INFINITY);
Download (0.10MB)
Added: 2007-01-24 License: Perl Artistic License Price:
1003 downloads
Making-Money-Fast 1.0
The Ultimate Safe Money Guide -Free Online Money Guide Make Your Online Money The Safe Way And Generate a Daily Income Stream. The best thing I came ... more>> <<less
Download (2117KB)
Added: 2009-04-27 License: Freeware Price: Free
179 downloads
UMLet 7.1
UMLet is a lightweight tool for rapidly drawing UML diagrams. more>>
UMLet project is an open-source Java tool for rapidly drawing UML diagrams with a pop-up-free, light-weight user interface.
UMLet lets you draw diagram sketches fast; export diagrams to eps, pdf, jpg, svg, and sys.
Add elements to a diagram with a double click. Edit elements using the lower-right text panel. Select multiple elements using Ctrl or lasso. Press C to copy diagram to the system clipboard
Main features:
- fast
- text-based sequence diagram
- call from command line.
<<lessUMLet lets you draw diagram sketches fast; export diagrams to eps, pdf, jpg, svg, and sys.
Add elements to a diagram with a double click. Edit elements using the lower-right text panel. Select multiple elements using Ctrl or lasso. Press C to copy diagram to the system clipboard
Main features:
- fast
- text-based sequence diagram
- call from command line.
Download (4.9MB)
Added: 2006-11-22 License: GPL (GNU General Public License) Price:
657 downloads
Content Area Focus 0.1
Content Area Focus is an extension used to solve the content area focus loss. more>>
Content Area Focus is an extension used to solve the content area focus loss.
Target audience: those who are mostly using the keyboard to navigate around and switch between tabs; frequently they encounter situations in which the content area doesnt have focus.
Method: just giving focus to the content area for any "regular" keystrokes made when the main-window is in focus.
<<lessTarget audience: those who are mostly using the keyboard to navigate around and switch between tabs; frequently they encounter situations in which the content area doesnt have focus.
Method: just giving focus to the content area for any "regular" keystrokes made when the main-window is in focus.
Download (0.001MB)
Added: 2007-04-03 License: MPL (Mozilla Public License) Price:
937 downloads
lwIP 0.5.3
LwIP is a light-weight implementation of the TCP/IP protocol suite. more>>
lwIP is a light-weight implementation of the TCP/IP protocol suite that was originally written by Adam Dunkels of the Swedish Institute of Computer Science but now is being actively developed by a team of developers distributed world-wide headed by Leon Woestenberg.
Since its release, lwIP very interesting and and today is being used in many commercial products. lwIP has been ported to several platforms and operating systems and can be run either with or without an underlying OS.
The focus of the lwIP TCP/IP implementation is to reduce the RAM usage while still having a full scale TCP. This makes lwIP suitable for use in embedded systems with tens of kilobytes of free RAM and room for around 40 kilobytes of code ROM.
Main features:
- IP (Internet Protocol) including packet forwarding over multiple network interfaces
- ICMP (Internet Control Message Protocol) for network maintenance and debugging
- UDP (User Datagram Protocol) for datagram data
- TCP (Transmission Control Protocol) with congestion control, RTT estimation and fast recovery/fast retransmit
- Specialized no-copy API for enhanced performance
- Optional Berkeley socket API
<<lessSince its release, lwIP very interesting and and today is being used in many commercial products. lwIP has been ported to several platforms and operating systems and can be run either with or without an underlying OS.
The focus of the lwIP TCP/IP implementation is to reduce the RAM usage while still having a full scale TCP. This makes lwIP suitable for use in embedded systems with tens of kilobytes of free RAM and room for around 40 kilobytes of code ROM.
Main features:
- IP (Internet Protocol) including packet forwarding over multiple network interfaces
- ICMP (Internet Control Message Protocol) for network maintenance and debugging
- UDP (User Datagram Protocol) for datagram data
- TCP (Transmission Control Protocol) with congestion control, RTT estimation and fast recovery/fast retransmit
- Specialized no-copy API for enhanced performance
- Optional Berkeley socket API
Download (0.15MB)
Added: 2006-07-03 License: Freeware Price:
1210 downloads
Class::Accessor::Fast::Contained 0.05
Class::Accessor::Fast::Contained is a Perl module for fast accessors with data containment. more>>
Class::Accessor::Fast::Contained is a Perl module for fast accessors with data containment.
SYNOPSIS
package Foo;
use base qw(Class::Accessor::Fast::Contained);
# The rest is the same as Class::Accessor::Fast
This module does two things differently to the venerable Class::Accessor::Fast :
Fields are stored at arms-length within a single hash value of $self, rather than directly in the $self blessed referent.
new() allows mixin into an existing object, rather than creating and returning a new blessed hashref. To do this, just call something like:
my $self = Some::Other::Class->new;
$self = $self->Class::Accessor::Fast::Contained::new;
Note that the mixin code only supports objects which use a blessed hash reference or a blessed typeglob reference.
An alias setup() is available which does the same as new() but might make more sense if being used in this way.
<<lessSYNOPSIS
package Foo;
use base qw(Class::Accessor::Fast::Contained);
# The rest is the same as Class::Accessor::Fast
This module does two things differently to the venerable Class::Accessor::Fast :
Fields are stored at arms-length within a single hash value of $self, rather than directly in the $self blessed referent.
new() allows mixin into an existing object, rather than creating and returning a new blessed hashref. To do this, just call something like:
my $self = Some::Other::Class->new;
$self = $self->Class::Accessor::Fast::Contained::new;
Note that the mixin code only supports objects which use a blessed hash reference or a blessed typeglob reference.
An alias setup() is available which does the same as new() but might make more sense if being used in this way.
Download (0.005MB)
Added: 2007-03-15 License: GPL (GNU General Public License) Price:
953 downloads
bitmask 1.5
bitmask project is a light-weight and fast 2D collision detection library. more>>
bitmask project is a light-weight and fast 2D collision detection library.
The bitmask library provides pixel-perfect collision detection for use in games and other applications. Functions are provided for building bitmasks and testing them for intersection.
The routines can optionally provide a point of intersection and the number of overlapping pixels. The library aims for high performance and portability; it is written in ANSI C and is completely independent of the underlying graphics implementation.
Enhancements:
- Bugfix for bitmask_draw.
- Better testcases.
- Small performance improvements.
<<lessThe bitmask library provides pixel-perfect collision detection for use in games and other applications. Functions are provided for building bitmasks and testing them for intersection.
The routines can optionally provide a point of intersection and the number of overlapping pixels. The library aims for high performance and portability; it is written in ANSI C and is completely independent of the underlying graphics implementation.
Enhancements:
- Bugfix for bitmask_draw.
- Better testcases.
- Small performance improvements.
Download (0.016MB)
Added: 2006-11-18 License: LGPL (GNU Lesser General Public License) Price:
1074 downloads
Earn-Fast-Cash 1.0
The Ultimate Safe Money Guide -Free Online Money Guide Make Your Online Money The Safe Way And Generate a Daily Income Stream. The best thing I came ... more>> <<less
Download (2117KB)
Added: 2009-04-19 License: Freeware Price: Free
189 downloads
QoS Connection Tuning HOWTO 0.61
QoS Connection Tuning HOWTO is a document which explains how to tune network connection performance. more>>
QoS Connection Tuning HOWTO is a document which explains how to tune network connection performance.
This enables you to get the maximum benefit out of your connection without lag and loss.
<<lessThis enables you to get the maximum benefit out of your connection without lag and loss.
Download (MB)
Added: 2006-10-10 License: (FDL) GNU Free Documentation License Price:
1115 downloads
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