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Genoa Active Message MAchine 13-July-2007

Genoa Active Message MAchine 13-July-2007


Genoa Active Message MAchine is a low-latency, high-throughput driver wrapper for the Linux kernel. more>>
Genoa Active Message MAchine is a low-latency, high-throughput driver wrapper for the Linux kernel, using Active Ports (a version of Active Messages).
Genoa Active Message MAchine runs parallel to the IP stack and is designed for LANs only.
Main features:
- A low latency, high throughput communication system for clusters of PCs
- Supports both single and dual CPU processing nodes (Intel IA-32 or x86_64)
- Runs on Gigabit Ethernet
- SPMD parallel processing with message passing
- Can run IP traffic when not in use
- Good programmability thanks to fairly high abstraction level
- Reliable thanks to mechanisms for retransmission of missing packets
- Implemented as a network device driver for Linux 2.6, and released under GNU GPL
Network Of Workstations (NOWs) and clusters of PCs interconnected by modern, industry-standard LAN fabrics (Gigabit Ethernet, Myrinet, SCI) and running the Linux operating system, have became an attractive and cost-effective architecture for parallel and distributed applications. The usual drawback of a standard PC cluster is the poor performance of the support to inter-process communication over the interconnect. Current implementations of industry-standard communication primitives, APIs, and protocols, usually show high communication latencies and low communication throughput.
We have developed a system for inter-process communication, called the Genoa Active Message MAchine (GAMMA). GAMMA runs on Linux clusters of PCs with Intel IA-32 processors (Intel Pentium, AMD K6, and superior models), or x86_64 processors (AMD Athlon64, AMD Opteron, Intel EMT-64), networked by a Gigabit Ethernet.
The core of GAMMA is a custom Linux network device driver, which operates the Network Interface Card (NIC). The GAMMA driver delivers low latency, high throughput communication services based on Active Ports, a mechanism derived from Active Messages. Both point-to-point and broadcast communications are provided. Broadcast communication exploits the Ethernet broadcast directly.
The GAMMA driver is able to manage standard IP traffic as long as no parallel job is running. Therefore, all IP services are up and running whenever the cluster is not in use by any parallel job.
The communication mechanisms implemented in the GAMMA driver are made available to application writers through the GAMMA user library. The GAMMA library provides support to application launch, process grouping, point-to-point/broadcast communications based on the Active Ports mechanisms, and some collective routines (barrier synchronization, and broadcast).
GAMMA provides two levels of QoS. The lower one, corresponding to the fastest communications, is a best-effort service. With this service, network congestion and ``hot spots may cause the receiver NIC or even the LAN switch to loose packets by overrun. The other QoS level provides flow-controlled communication, ensuring reliability up to hardware faults, at a negligible performance penalty.
Installing the GAMMA driver requires only two small and marginal patches to the original Linux kernel. The Linux kernel extended by the GAMMA driver must be installed on each PC in the cluster.
A porting of MPI atop GAMMA is available, called MPI/GAMMA.
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Added: 2007-08-08 License: GPL (GNU General Public License) Price:
807 downloads
PHP Exif Library 0.9.1

PHP Exif Library 0.9.1


PHP Exif Library (PEL) lets you manipulating Exif (Exchangeable Image File Format) data. more>>
PHP Exif Library in short PEL is a library that lets you manipulate Exif (Exchangeable Image File Format) data. This is the data that digital cameras place in their images, such as the date and time, shutter speed, ISO value and so on.
Using PEL, one can fully modify the Exif data, meaning that it can be both read and written. PEL is written completely in PHP and depends on nothing except a standard installation of PHP, version 5, which was released on July 13th 2004.
Main features:
- Reads and parses both JPEG and TIFF images.
- Supports reading and writing all Exif tags.
- Supports internationalisation.
- Extensible object-oriented design. PEL utilizes the new features in PHP 5.
- Tested with SimpleTest (11 camera models tested, plus core tests).
- Fully documented with PhpDocumentor, see the online API documentation.
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Added: 2006-12-19 License: GPL (GNU General Public License) Price:
1050 downloads
Jikes 1.22

Jikes 1.22


Jikes is a Java compiler that translates Java source into bytecoded instruction sets more>>
JikesTM is a compiler that translates JavaTM source files as defined in The Java Language Specification into the bytecoded instruction set and binary format defined in The Java Virtual Machine Specification.

You may wonder why the world needs another Java compiler, considering that Sun provides javac free with its SDK. Jikes has five advantages that make it a valuable contribution to the Java community:

* Open source. Jikes is OSI Certified Open Source Software. OSI Certified is a certification mark of the Open Source Initiative.
* Strictly Java compatible. Jikes strives to adhere to both The Java Language Specification and The Java Virtual Machine Specification as tightly as possible, and does not support subsets, supersets, or other variations of the language. The FAQ describes some of the side effects of this strict language conformance.
* High performance. Jikes is a high performance compiler, making it ideal for use with larger projects.
* Dependency analysis. Jikes performs a dependency analysis on your code that provides two very useful features: Incremental builds and makefile generation.
* Constructive Assistance. Jikes strives to help the programmer write better code in two key ways. Jikes has always strived to provide clear error and warning text to assist the programmer in understanding problems, and now with release 1.19 Jikes helps point out common programming mistakes as documented in Effective Java.

Abridged from a FAQ entry which was adapted from some material by Lou Grinzo for an article he wrote.

The fact that Jikes is a high-performance, highly compatible Java compiler that can be used on almost any computing platform makes it an interesting program and worth investigating for almost any Java programmer. But Jikes is also notable because it lies at the center of two events: the adoption of open source philosophy and practice by large corporations, and the continued growth of Java for Linux.

Its worth pointing out that Jikes is not, and is not intended to be, a complete development environment -- it is simply a command line compiler. It should not be considered a replacement for more complete tools, such as Source Navigator or IBMs VisualAge for Java which provide sophisticated graphical IDEs (Integrated Development Environments).

The Jikes compiler was released in binary form in April 1997 on the IBM alphaWorks site. Jikes for Linux was released on 15 July 1998. The response was overwhelming -- Jikes had more downloads in the three months after the announcement than in the fifteen months before the announcement.

Release of Jikes for Linux was soon followed by requests to open up the source. Many notes and comments from users suggested this would be a good idea. The source was released under a liberal license in December 1998 to make a very visible demonstration of IBMs commitment to open standards and to Java Technology, to make Jikes more reliable and accessible, to encourage more widespread use of Java Technology, to encourage standardization of Java Technology, and to gain some experience actually running an open source project. This marked the start of one of IBMs first efforts in the open source arena.

The original alphaWorks version of Jikes was written by Philippe Charles and Dave Shields of the IBM T. J. Watson Research Center. Since the release of the source they have continued to work on the compiler as contributors; however recently have officially been moved on to other projects within IBM. Today there are no IBMers who work on Jikes as part of their job description. Jikes survives today soley based on the free time contributions of members of the open source community.

The source code is available under IBMs Public License, which has been approved by the OSI (Open Source Initiative) as a fully certified open source license. The project provides access to the complete CVS development tree, which includes not only Jikes, but also the source for the Jacks Test Suite and the Jikes Parser Generator used to build Jikes. Jikes is included in many Open Source Operating Systems. The Jacks Test Suite is a replacement for the Jikestst package.
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Added: 2005-04-18 License: IBM Public License Price:
1661 downloads
FTwall 2.02

FTwall 2.02


FTwall is short for Fast Track traffic Firewall, a P2P traffic filtering script, for Kazaa blocking. more>>
FTwall is short for Fast Track traffic Firewall, a P2P traffic filtering script, for Kazaa blocking.
Ftwall-2 is an updated version of the original ftwall-1 software which adds new P2p protocols to the set it can control.
Ftwall-2 is an add-on for linux firewalls that allows the control of "Fast Track" peer-to-peer traffic (such as is used by "Kazaa" and its derivatives), WinMX and others using the OpenNAP protocol.
It is designed to block network traffic from P2P client applications running in the "home" (or "green") network from making access to any peers on the public internet. It is designed primarily for use in networks where the security reigme allows "open access" for outbound connections and "tightly limited" access for inbound ones. Ftwall-2 can be used in networks like this to prevent outbound P2P access from the supported protocols, hence restricting illegal file downloads and uploads.
A Fast track "home network" client that establishes an "outbound" connection is (worryingly) immediately available to accept inbound connections through the established TCP/IP socket - even if the gateway firewall blocks all in-bound connections via "normal" TCP/IP and UDP mechanisms. This is a kind of limited "tunnelling" and gives rise to a number of concerns. Other P2P applications and protocols present similar security challenges. Ftwall solves this (and other) problems for the protocols it understands.
Version 1 of ftwall controlled the Fast Track protocol only (Kazaa et al).
Version 2 of ftwall (the version discussed on this page) adds logic to allow blocking of traffic from WinMX and OpenNap clients using a mechanism based on DNS name wildcards. One simple example is the control of WinMXs native protocol which can be blocked by preventing access to IP addresses resolved from any domain name that ends "winmx.com". OpenNAP is similarly controlled using DNS wildcards to "train" ftwall. See the man page (etc) for these new features by following the links at the bottom of the page.
FTwall-2 runs on Linux-based firewalls using kernel 2.4 (tested with 2.4.20) or later and iptables (test with version 1.2.6). This combination of version numbers is the current set employed by RedHat 8.0 - which is the system on which the software has been developed. The software has also been tested briefly on RedHat 9 and Fedora - but I am awaiting more in-depth news of these and other Linux distributions.
FTwall-2 runs well on the "ipcop" firewall, version 1.3.0 (GPL) with the QUEUE target and string match modules added manually. I believe that it will similarly run on Smoothwall 2 (GPL) although I have not tested this. It will NOT run on Smoothwall 1.0 since this is an "ipchains" based firewall, not an "iptables" one.
FTwall-2 has been tested with the following P2P client applications:
Kazaa 2.1.1, 2.5-beta2, 2.5.1
Kazaa Lite 2.0.2, K++ 2.4.3
iMesh 4.1 build 132, 4.2 build 138
Grokster 1.7
WinMX 3.31
Version restrictions:
- Ftwall requires Linux kernel version 2.4, equipped with "iptables" and the "QUEUE" target. The "ip_string" match module of iptables is desirable, but not required.
- Ftwall works with the "current" version of the Fast track, WinMX and OpenNAP network protocols at the time of writing (July 2004). It is possible that it will need to be re-worked if the protocols are changed in future.
- Ftwall does not block the "SOCKS PROXY" connection option of FastTrack. For a complete lock-down, the firewall must block this style of traffic.
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Added: 2007-02-14 License: GPL (GNU General Public License) Price:
983 downloads
 
Other version of FTwall
FTwall 1.09"current" version of the Kazaa Fast track network protocol at the time of writing (July 2004). It is possible that it will need to be re-worked if the protocols are changed in future. - Ftwall does
License:GPL (GNU General Public License)
Download (MB)
983 downloads
Added: 2007-02-14
SKForum 1.5

SKForum 1.5


SKForum project is a forum application with a Wiki, comic system, guestbook, and address book. more>>
SKForum project is a forum application with a Wiki, comic system, guestbook, and address book.
SKForum is an open source (see licensing) web-based J2EE forum application. But its so much more, its a comic system, an addressbook, a wiki, a timetracking system, a todo list, a poll system, a guestbook system and a few other small nuts and bolts.
SKForum was first taken into use in september of 2000. By july of 2001 it had grown to 6 464 lines of code, and at october 2003 it is at 49 067 lines total. Of these 37 596 are java source file lines.
Internationalization
SKForum has i18n support and supports the following languages:
- English (US)
- Swedish (SE)
- French (FR)
Installation howto
1. Install mysql.
2. Create a database in mysql called "forum".
3. Install Java 2 SDK
4. Install a J2EE servlet container, I recommend Resin 2.x (it is also a webserver and can be integrated with IIS or Apache if you want)
5. Get the SKForum WAR file.
6. Make sure theres no caching done on the forum, resin for example has a default caching setting, remove the part of the config.
7. Install the forum as a toplevel app. It will currently not work unless "/" leads to its own top level.
8. Set up the data sources. If needed install the JDBC driver in the servlet container (get the mysql driver here).
Setup data source in Resin 2.x
Setup data source in Resin 3.x
Setup data source in Orion
9. This step only if you do not use Resin: If you use tomcat, remove web.xml and rename tomcat-web.xml to web.xml. Otherwise comment out the parts of web.xml that is marked "resin specific" that your server does not support.
10. Get the mysql jdbc driver and put it in your app servers lib directory.
11. Login with the username and password you want for the admin account. The first person who logs into the forum will get full rights and be set up as admin by default.
Enhancements:
- features:
- tasks system added
- description field for areas
- add/remove areas to/from hotlist inside the area
- invitation support for user groups
- planning warns for close events in the hotlist
- custom area type: quotes
- custom area type: pictures
- custom area type: links
- wiki URL rewriting for good wiki URLs
- editing and posting redirects instead of forwards, no more issues with reposting
- added login success/failure logging to database
- bugs:
- checkbox bug in IE fixed
- user addition delay fixed
- fixed address book VCS export for OS X
- planning info box at the bottom displayed at the top
- subscribe broken for comics
- shows deleted status for single-line messages in dynamic collapsing mode
- access rights to areas were ignored
- issue with hotlist resolved
- cant write in empty area
- editing of planning events sometimes fail
- sorting in archive is by unicode, not by character
- improvements:
- switched all maps and arrays to use fastutil
- zip download for archive give a good filename
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Added: 2007-03-12 License: Public Domain Price:
957 downloads
PieSpy 0.4.0

PieSpy 0.4.0


PieSpy is an IRC bot that monitors a set of IRC channels. more>>
PieSpy is an IRC bot that monitors a set of IRC channels. It uses a simple set of heuristic methods to infer relationships between pairs of users. These inferrences allow PieSpy to build a mathematical model of a social network for any channel. These social networks can be drawn and used to create animations of evolving social networks.
PieSpy has also been used to visualize Shakespearean social networks.This page got slashdotted on 11 March 2004, with the site getting 250,000 hits per hour. Thanks to Notnet for making sure it all stayed alive!
PieSpy was presented at the Information Visualization conference (IV04) in July 2004. Read the full paper online. It has also appeared in Computer Weekly, ct magazine, and I was interviewed live on BBC Radio Kent.
Enhancements:
- Now tracks nickname changes. Generates images five times faster. Removes formatting and colors from messages. The source code has been refactored to make it easy to add new InferenceHeuristics, which are used to work out who is talking to whom - if you create any good ones, let me know! The config file lets you apply different weightings to each InferenceHeuristic.
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Added: 2006-06-17 License: GPL (GNU General Public License) Price:
1226 downloads
EventCal 0.42

EventCal 0.42


EventCal project is a calendar class that allows events to be managed and output to HTML in daily, weekly, and monthly views. more>>
EventCal project is a calendar class that allows events to be managed and output to HTML in daily, weekly, and monthly views.
Classes
class Calendar
Methods defined here:
__init__(self, language=en)
Creates an empty event list and sets the language
add(self, event)
cell(self, type=free, s=)
dayview(self, day, month=1, year=2007, smallify=False)
Generates a two-column table for the specific day with one column
holding the hours and the other holding any events
eventlist(self)
Generates an unordered list with all events listed
monthview(self, month=1, year=2007, smallify=False)
setlang(self, language)
Sets the months and week day names to the appropriate language
weekview(self, day, month=1, year=2007, smallify=False)
class Event
Events are only specific down to the hour. start and length are hours.
Methods defined here:
__cmp__(self, other)
Comparison method. Returns true if the day, month and year match
__init__(self, message, start, length, day, month, year)
__repr__(self)
Functions
am_pm(x)
Convert 24hour integer to 12hour string i.e. 13 becomes 1pm
geteventdayname(event)
interval(startHour, length)
Returns a string: startHour(am/pm) to startHour+length(am/pm). 12 noon is replaced with noon
shiftday(day)
Shifts from Sun-Sat to Mon-Sun
today(smallify=False)
weekday(day, month, year)
Returns the day of the week from 0-6 starting from Monday
Data
daynames = [Sunday, Monday, Tuesday, Wednesday, Thursday, Friday, Saturday]
mdays = [31, 28, 31, 30, 31, 30, 31, 31, 30, 31, 30, 31]
months = [January, February, March, April, May, June, July, August, September, October, November, December
Enhancements:
- All strings were converted to use Unicode.
- Spanish translations for day and month names were added.
- __getattr__ was replaced with properties.
- String replacer body were replaced with calls to re.sub so the $ can be escaped with a backslash.
- The first week of monthview was fixed to properly replace format.
- About 20 lines of code that generated the first week in the monthview were removed.
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Added: 2007-07-18 License: MIT/X Consortium License Price:
838 downloads
ChainBuilder ESB for Linux 2.0

ChainBuilder ESB for Linux 2.0


ChainBuilder ESB is an open source solution for use in Service Oriented Architecture (SOA) environments. ChainBuilder ESB creates standards-based components though drag and drop graphical user interfa more>>

ChainBuilder ESB is an open source Enterprise Service Bus. ChainBuilder ESB allows IT developers with Service Oriented Architecture (SOA) infrastructures to create standards-based ESB components through Eclipse-based graphical user interfaces. Most organizations SOAs need to include strategic backend systems that operate with non-XML data formats and non-WebServices communication protocols. Bostech focus on usability ensured the initial offerings of ChainBuilder ESB had industry standard editors to manage EDI X12, HL7, fixed and variable formats and communication components for TCP/IP, FTP and file protocols and database components for JMS and ETL integrations - the formats and protocols that organizations with mature applications absolutely require. ChainBuilder ESB also has uncommon high-end open source features, like an AJAX-based Console web interface for monitoring and controlling the production environment, usually found only with expensive proprietary systems. Bostech Corporation is deploys a dual-license distribution model for ChainBuilder ESB. Developers can download the open source software for Windows, Linux and Unix under the common GPL license at http://www.chainforge.net. A commercial license and subscription support is also available for enterprises and software vendors.

System Requirements: P4/1GB ram/10GB HD min; dual 3.0Ghz/2GB ram preferred

System Requirements: 2.0, Oct 2008 1.3.1, July 2008, incls Java 6 1.2, Mar 2008, incls ETL and Vista 1.1, Aug 2007, incls HL7, POP3, SMTP and framework; 1.0, Jan 2007, incls console and JDBC support; Beta Release, Dec 2006, incls source code and Linux support; Alpha Release, Sep 2006, incls Windows support;

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Added: 2009-04-02 License: Freeware Price: $0
204 downloads
Klusters 1.6.1

Klusters 1.6.1


Klusters is a powerful and easy-to-use graphical application for spike sorting of extracellular neuronal recordings. more>>
Klusters is a powerful and easy-to-use graphical application for spike sorting of extracellular neuronal recordings.
While the accuracy and speed of spike sorting is dramatically improved by automatic classification algorithms, the results of automatic algorithms must be examined manually to ensure that the assigned clusters correspond to single neurons. Klusters has been carefully designed to make this process as fast and error-free as possible.
Main features:
- Multiple type of views including Cluster View displaying spikes in the PCA feature space, Waveform View and Correlation View displaying auto-and cross-correlograms.
- Cluster colors making it easy to quickly identify a given cluster across different views.
- Time trajectory display to identify possible electrode drift.
- "Grouping Assistant" to suggest which pairs of clusters may result from overclustering of a single neuron.
- "Recluster" feature to automatically split clusters that may be several distinct neurons (underclustering), using an external classification program.
- Multiple displays open at once, which can be useful to examine different subsets of the data in parallel.
- Multiple undo and redo on the last actions.
- Print and export to postcript and pdf.
- Ergonomic user interface for maximum speed and reliability.
Enhancements:
- The source archive klusters-1.4.tar.gz released on July 08 did not compiled on certain distributions, this is now corrected.
- If you have encounter this problem, please download a copy of the corrected archive and try again. [This does not affect the debian package].
- In addition a layout bug was corrected in the documentation. [This affects both the source archive and the debian package].
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Added: 2005-06-07 License: GPL (GNU General Public License) Price:
1602 downloads
Syllable 0.6.4

Syllable 0.6.4


Syllable is a reliable and easy-to-use open source operating system for the home and small office user. more>>
Syllable was born in July 2002 as a fork of the AtheOS operating system. Several AtheOS developers, concerned about the long-term development of AtheOS, created Syllable to ensure that development would continue.
Syllables goal is to create a reliable and easy-to-use open source operating system for the home and small office user. We also want to encourage developers to create an operating system that is intuitive, easy to use, and powerful.
Main features:
- Booting usually takes less than ten seconds
- A full GUI is built into the OS
- Support for a wide range of common hardware devices, including video, network, and sound cards from manufacturers such as Intel, AMD, 3Com, nVidia, and Creative (see Azaka for a complete list)
- Internet access through an Ethernet network (though PPP and PPPoE are not yet supported)
- A graphical web browser (ABrowse) and e-mail client (Whisper), and hundreds of other native applications (see Kamidake for a complete list)
- A journalled file system, modelled on the BeOS file system
- An application launcher (like the Windows Start button)
- 99% POSIX compliance
- GUI-based preferences tools for networking, display preferences, user administration, etc.
- The entire source is available via the GPL
- An object-oriented programming API
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Added: 2007-07-16 License: GPL (GNU General Public License) Price:
837 downloads
Jikes RVM 2.9.1

Jikes RVM 2.9.1


Jikes RVM is a virtual machine and runtime environment for Java. more>>
Jikes RVM is a compiler that translates JavaTM source files as defined in The Java Language Specification into the bytecoded instruction set and binary format defined in The Java Virtual Machine Specification.

You may wonder why the world needs another Java compiler, considering that Sun provides javac free with its SDK. Jikes has five advantages that make it a valuable contribution to the Java community: [OSI Certified Logo]

* Open source. Jikes is OSI Certified Open Source Software. OSI Certified is a certification mark of the Open Source Initiative.
* Strictly Java compatible. Jikes strives to adhere to both The Java Language Specification and The Java Virtual Machine Specification as tightly as possible, and does not support subsets, supersets, or other variations of the language. The FAQ describes some of the side effects of this strict language conformance.
* High performance. Jikes is a high performance compiler, making it ideal for use with larger projects.
* Dependency analysis. Jikes performs a dependency analysis on your code that provides two very useful features: Incremental builds and makefile generation.
* Constructive Assistance. Jikes strives to help the programmer write better code in two key ways. Jikes has always strived to provide clear error and warning text to assist the programmer in understanding problems, and now with release 1.19 Jikes helps point out common programming mistakes as documented in Effective Java.

Abridged from a FAQ entry which was adapted from some material by Lou Grinzo for an article he wrote.

The fact that Jikes is a high-performance, highly compatible Java compiler that can be used on almost any computing platform makes it an interesting program and worth investigating for almost any Java programmer. But Jikes is also notable because it lies at the center of two events: the adoption of open source philosophy and practice by large corporations, and the continued growth of Java for Linux.

Its worth pointing out that Jikes is not, and is not intended to be, a complete development environment -- it is simply a command line compiler. It should not be considered a replacement for more complete tools, such as Source Navigator or IBMs VisualAge for Java which provide sophisticated graphical IDEs (Integrated Development Environments).

The Jikes compiler was released in binary form in April 1997 on the IBM alphaWorks site. Jikes for Linux was released on 15 July 1998. The response was overwhelming -- Jikes had more downloads in the three months after the announcement than in the fifteen months before the announcement.

Around the end of March 2002, IBM opened a fledgling community hosting location attached to their developerWorks site with Jikes as a founding member. Approximately 3 years later this server was decommissioned and the most active projects migrated into SourceForge.net hosting options. During those three years Jikes was the #1 most popular project every month, often by a large margin. We approached nearly 250,000 downloads while residing at dw/oss, and had been consistently tallying triple digit daily downloads.

Release of Jikes for Linux was soon followed by requests to open up the source. Many notes and comments from users suggested this would be a good idea. The source was released under a liberal license in December 1998 to make a very visible demonstration of IBMs commitment to open standards and to Java Technology, to make Jikes more reliable and accessible, to encourage more widespread use of Java Technology, to encourage standardization of Java Technology, and to gain some experience actually running an open source project. This marked the start of one of IBMs first efforts in the open source arena.

The original alphaWorks version of Jikes was written by Philippe Charles and Dave Shields of the IBM T. J. Watson Research Center. For awhile after the release of the source they continued to work on the compiler as contributors; however, shortly after the project migrated to developerWorks Open Source Server they were officially moved off onto other projects within IBM. Today there are no IBMers who work on Jikes as part of their job description. Jikes survives today soley based on the free time contributions of members of the open source community.

The source code is available under IBMs Public License, which has been approved by the OSI (Open Source Initiative) as a fully certified open source license. The project provides access to the complete CVS development tree, which includes not only Jikes, but also the source for the Jacks Test Suite and the Jikes Parser Generator used to build Jikes. Jikes is included in many Open Source Operating Systems. The Jacks Test Suite is a replacement for the Jikestst package.
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Added: 2007-07-03 License: DFSG approved Price:
515 downloads
Quantian 0.7.9.2

Quantian 0.7.9.2


The Quantian Scientific Computing Environment is a Knoppix / Debian variant tailored to numerical and quantitative analysis. more>>
Quantian distribution is a remastering of Knoppix, the self-configuring and directly bootable dvd/cdrom that turns any pc or laptop (provided it can boot from cdrom/dvd) into a full-featured Linux workstation.
Recent versions of Quantian are based on clusterKnoppix and add support for openMosix, including remote booting of light clients in an openMosix terminal server context. Earlier releases are still available; see below for URLs for downloads as well as ordering information.
Brief introductory information is available in a paper (from June 2004) submitted to The Political Methodologist, slides from the presentation at Usenix 2004 (July 2004), and in the earlier (revised) paper about Quantian that has appeared in the DSC 2003 Proceedings.
Quantian is an extension of Knoppix and clusterKnoppix from which it takes its base system of around two gigabytes of software, along with fully automatic hardware detection and configuration.
Enhancements:
- Kernel 2.6.12, KDE 3.5 / 3.4, OpenOffice 2.0, ... and more from Knoppix 4.0.2
- a backport of the openMosix-enabled 2.4.27 kernel and openMosix tools from the last clusterKnoppix release,
- very comprehensive support for GNU R with over 870 packages from CRAN and BioConductor, plus ESS, Ggobi, Rpad, RKward, RSPerl, JGR, ...
- addition of the Java 1.5.0 SDK enabling us to add ImageJ, Weka, JGR, Mondrian;
- plus a number of other new packages (inkscape, orsa, praat, wxmaxima, some more Debian documentation...)
- and still loads more of math, bio, engineering, LaTeX, ... software
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Added: 2006-03-02 License: GPL (GNU General Public License) Price:
1343 downloads
ferrisfuse 0.1.0

ferrisfuse 0.1.0


ferrisfuse is a FUSE module for mounting libferris filesystems through the Linux kernel. more>>
ferrisfuse is a FUSE module for mounting libferris filesystems through the Linux kernel.
About libferris
In non technical terms libferris makes the file system and other hierarchical storage systems easier to use. For the geeks out there, libferris is a virtual file system (VFS) that runs in the user address space. The FAQ contains entries related to installation, configuration and the usage of libferris.
As of July 2005 libferris can mount many interesting things ranging from a filesystem from your local Linux kernel through to LDAP, Evolution, PostgreSQL, dbXML, and RDF. To get an impression of the current capabilities of libferris mounting see the plugins/context directory of the lastest release. New things to mount are always being added.
Other than mounting things as a filesystem, the other core concept of libferris is extraction of interesting metadata from your libferris filesystems. This means that simple things like width and height of an image file become first class metadata citizens along with a files size and modification time. The limits on what metadata is available extend far beyond image metadata to include XMP, EXIF, music ID tags, geospatial tags, rpm metadata, SELinux integration, partially ordered emblem categories and arbitrary personal RDF stores of metadata.
Though some consider the last point of purely academic interest the end result is that you can add metadata to *all* libferris objects even those you only have read access too, for example, you can attach emblems to this website just as you would a normal file. The metadata interface gives all metadata from file size to digital signature status information equal standing. As such you can sort a directory by any metadata just as easily as you would ls -Sh to sort by file size. Sorting on multiple metadata values is also supported in libferris, you can easily sort your files by mimetype, then image width, then modification time with all three pieces of metadata contributing to the final directory ordering.
Late in 2004 extensive support for both fulltext and metadata indexing was added to libferris. This means you can supply queries against the contents or metadata of any libferris accessable object and have the results returned as a virtual filesystem. With the above mentioned metadata available for searching, finding your files can be done in many different ways instead of being forced to generate fixed directory trees using part of a file collections semantics as directory names. The metadata and virtual filesystem play together here allowing you to geospatially tag both your digital pictures, trip plans, and relevent websites and recall these objects in a single virtual directory no matter what their path or URL may be.
There is also a Samba VFS module which allows you to expose a libferris filesystem as a Samba share. Kfsmd uses the inotify kernel interface to allow libferris to watch changes made to your kernel filesystem by non libferris applications and update its indexes appropriately. Ferriscreate provides a command line and GTK+2 application for creating "new files" with libferris. With this you can create a new db4 database, dbXML database or fulltext index just as easily as you can make a regular file.
The ego filemanager is a GTK+2 interface built on top of libferris. It provides GTK treeview , gevas/edje and gecko based interfaces and makes extensive use of libferris clients to provide its functionality.
If you have a project you wish to use libferris with and want extensions made dont hesitate to contact one of the developers to arrange consulting.
For the geeks out there, libferris is a virtual file system (VFS) that runs in the user address space. At the moment libferris is a shared object that each application can dynamically link to in order to see the file system through a nicer abstraction.
New additions to the XML module allow for data to be converted from one format to another by the VFS for you. To copy data to an XML file:
fcreate --create-type=xml --rdn=2.xml root-element=fred /tmp
gfcp -av Makefile.am --dst-is-dir /tmp/2.xml/fred
To copy data to a db4 file
fcreate --create-type=db4 --rdn=2.db /tmp
gfcp -av Makefile.am --dst-is-dir /tmp/2.db
Ferris presents a C++ interface that makes heavy use of the STL and IOStreams. Currently ferris has two main internal abstractions: Context and Attribute. A context is much like a traditional file or directory in a file system, the major differences being that a context can have both byte content (like a file) and subcontexts (like a directory). An attribute is a chunk of metadata about a context. Contexts can have many attributes.
Some attributes may be large, for example a base 64 encoded version of the contexts content (133% context size). On the other hand an attribute can be small, for example the file size is exposed as an attribute.
Access to all contexts and attributes is performed by first requesting either an IStream or IOStream for that context or attribute. In this way the same context/attribute can be open many times at the same time, just like normal kernel based IO.
Ferris uses Loki from "Modern C++ Design" by Alexandrescu. Most objects use automatic garbage collection based on the SmartPtr template class from Loki. Where possible objects in ferris use a FerrisRefCounted policy to provide COM like intrusive reference counting. This style is used for Context, Attribute and special wrappers of IOStreams that are provided. IOStreams are wrapped to provide a more flexible API than could be offered using references to IOStreams.
There are also new stream classes provided, for example NullStream and LimitingStream. Templates are provided to make SmartPtrs to standard IOStreams act just like the underlying stream would, for example, one can have SmartPtr ss; ss >> stringObj; and does not have to dereference the SmartPtr to use standard IOStreams extractors or inserters.
Ferris uses GModule from glib2 to dynamically load both context and attribute classes at run-time. This way resources are conserved until they are needed. The native file system context is statically linked to ferris at present. When loading either contexts or attribute classes ferris uses a double dispatch factory method. Put simply this means that for each plugin there are two libraries, one that tells ferris if the main one really needs to be loaded or not. Using this scheme ferris can load all the meta factory classes at any time and use these very small meta factories to check if the main factory can create objects that are going to be useful.
This scheme is of great use for attribute classes. Attribute classes take a context and can "generate" attributes from the context. An example of this sort of class would be a MD5 or Base64 attribute. Both can be generated from the base context. More interesting attributes are PCM audio and RGBA-32bpp image data. By using the double dispatch factory ferris can handle a great deal of attribute generators and load them on demand.
Ferris currently can decode mp3, read id3 tags, decode many image formats and break some animation formats into frames. This makes ferris a solid starting point for multimedia applications.
Ferris will automatically mount sub file systems for you. Examples of a sub file system include a Berkeley database or XML file. For example it is possible to read a context such as /tmp/myxml.xml/mynode. Using this automatic mounting the differences between storage formats effectively disappear. To a ferris enabled application loading data from a native disk file, a Berkeley database, and XML file, or mbox file appear to be the same. This allows the user of the application to choose the correct storage for the data at hand.
It is planned to move to a microkernel architecture in Version 2.1 of ferris. I choose 2.1 so that ferris does not fall into version 2 syndrome.
Enhancements:
- Many changes were made to better support rsync(1).
- Extended Attribute support was greatly improved.
- write() now also updates mtime.
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PythonCAD DS1-R36

PythonCAD DS1-R36


PythonCAD is a CAD package written, surprisingly enough, in Python. more>>
PythonCAD is a CAD package written, surprisingly enough, in Python. PythonCAD project aims to produce a scriptable, open-source, easy to use CAD package for Linux, the various flavors of BSD Unix, commercial Unix, and other platforms to which someone who is interested ports the program. Work began on PythonCAD in July, 2002, and the first public release was on December 21, 2002.

The twenty-fifth release of PythonCAD was made available May 26, 2005. This release fixes several compatibility issues found when running PythonCAD on PyGTK releseses prior than 2.4. Also, numerous changes to the event handling code have been applied to make the code better conform to GTK+/PyGTK conventions. Additionally a number of bug fixes and code improvements appear in this release as well.

Between the sixteenth and seventeenth releases of the program, the code was moved around internally to better cooperate with other Python programs. Unfortunately the Cocoa front-end code has suffered since then due to lack of maintainence and is currently not functional. Releases after the seventeenth release have attempted to improve the situation, but to no avail. A developer or team of developers running Mac OS X is needed to bring the Cocoa code into a usable state.

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Added: 2007-06-05 License: GPL (GNU General Public License) Price:
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Rocks Cluster 4.3

Rocks Cluster 4.3


Rocks Cluster Tool Kit is a Turnkey Linux COTS Clusters for x86 and IA64. more>>
Rocks Cluster is a complete "cluster on a CD" solution for x86 and IA64 Red Hat Linux COTS clusters.
Building a Rocks cluster does not require any experience in clustering, yet a cluster architect will find a flexible and programmatic way to redesign the entire software stack just below the surface (appropriately hidden from the majority of users).
Although Rocks includes the tools expected from any clustering software stack (PBS, Maui, GM support, Ganglia, etc), it is unique in its simplicity of installation.
From a hardware component and raw processing power perspective, commodity clusters are phenomenal price/performance compute engines. However, if a scalable ``cluster management strategy is not adopted, the favorable economics of clusters are offset by the additional on-going personnel costs involved to ``care and feed for the machine. The complexity of cluster management (e.g., determining if all nodes have a consistent set of software) often overwhelms part-time cluster administrators, who are usually domain application scientists. When this occurs, machine state is forced to either of two extremes: the cluster is not stable due to configuration problems, or software becomes stale, security holes abound, and known software bugs remain unpatched.
While earlier clustering toolkits expend a great deal of effort (i.e., software) to compare configurations of nodes, Rocks makes complete Operating System (OS) installation on a node the basic management tool. With attention to complete automation of this process, it becomes faster to reinstall all nodes to a known configuration than it is to determine if nodes were out of synchronization in the first place. Unlike a users desktop, the OS on a cluster node is considered to be soft state that can be changed and/or updated rapidly.
This is clearly more heavywieght than the philosophy of configuration management tools [Cfengine] that perform exhaustive examination and parity checking of an installed OS. At first glance, it seems wrong to reinstall the OS when a configuration parameter needs to be changed. Indeed, for a single node this might seem too severe. However, this approach scales exceptionally well, making it a preferred mode for even a modest-sized cluster. Because the OS can be installed from scratch in a short period of time, different (and perhaps incompatible) application-specific configurations can easily be installed on nodes. In addition, this structure insures any upgrade will not interfere with actively running jobs.
One of the key ingredients of Rocks is a robust mechanism to produce customized distributions (with security patches pre-applied) that define the complete set of software for a particular node. A cluster may require several node types including compute nodes, frontend nodes file servers, and monitoring nodes. Each of these roles requires a specialized software set. Within a distribution, different node types are defined with a machine specific Red Hat Kickstart file, made from a Rocks Kickstart Graph.
A Kickstart file is a text-based description of all the software packages and software configuration to be deployed on a node. The Rocks Kickstart Graph is an XML-based tree structure used to define RedHat Kickstart files. By using a graph, Rocks can efficiently define node types without duplicating shared components. Similiar to mammalian species sharing 80% of their genes, Rocks node types share much of their software set. The Rocks Kickstart Graph easily defines the differences between node types without duplicating the description of their similarities. See the Bibliography section for papers that describe the design of this structure in more depth.
By leveraging this installation technology, we can abstract out many of the hardware differences and allow the Kickstart process to autodetect the correct hardware modules to load (e.g., disk subsystem type: SCSI, IDE, integrated RAID adapter; Ethernet interfaces; and high-speed network interfaces). Further, we benefit from the robust and rich support that commercial Linux distributions must have to be viable in todays rapidly advancing marketplace.
Wherever possible, Rocks uses automatic methods to determine configuration differences. Yet, because clusters are unified machines, there are a few services that require ``global knowledge of the machine -- e.g., a listing of all compute nodes for the hosts database and queuing system. Rocks uses an SQL database to store the definitions of these global configurations and then generates database reports to create service-specific configuration files (e.g., DHCP configuration file, /etc/hosts, and PBS nodes file).
Enhancements:
- Rocks v4.3 is released for i386 and x86_64 CPU architectures. New features: Rocks command line - initial release of the Rocks command line which facilitates non-SQL administrative access to the database; PXE First - hosts can now be configured in BIOS with a boot order of CD, PXE, hard disk. Enhancements: based on CentOS 4.5 and all updates as of July 4, 2007; Anaconda installer updated to 10.1.1.63; performance improvement when building torrent files for the Avalanche Installer; database indirects, more flexibility with Rocks variables; Globus updated to gt4.0.4 with web services....
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Added: 2007-07-07 License: BSD License Price:
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