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Free isosurface software for linux

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K3DSurf 0.6.2

K3DSurf 0.6.2


K3DSurf is a program who generate 3D surfaces with Mathematical formulas. more>>
K3DSurf is a program who generate 3D surfaces with Mathematical formulas ( Parameter or Explicit equations).
A more advanced version is under construction so all your comments are welcome. K3DSurf program was made just for fun, to pass time and to learn some basic 3D drawing technics(without OpenGL).
If you cant run Linux, You can find an applet Java here : http://www.wintonet.com/java/j3dsurf.html. Its called J3DSurf...I hope also to finish a Gtk an Xwindow version soon(G3DSurf and X3DSurf).
Main features:
- Interactive visualization with mouse events (Right: Rotate, Middle: translate and left: Scale).
- Real time animation (rotation) and morph (by the introduction of t_time variable). Animation and morph can also be monitored by controls that affect the CPU usage and t_time step.
- Create screenshots by copying the draw window or by using the best ray tracer on the net: Povray.
- Create movie scene is also supported
- Generate Mesh files that describe the shape of the mathematical model.
- Supported formats are:
- 1. Povscript : Povray is the best ray tracer available on the net...and its free.
- 2. VRML2: to use with the majority of current browsers via an appropriate plug-in.
- 3. OBJ: a well-known file format supported by the majority of 3D applications (Blender, MAYA and Moray...).
Enhancements:
- General:
1) New GUI interface, with menus and toolbar.
2) Possibility to save a config file to store infos about colors and isosurfaces resolution.
- Isosurface:
1) The OpenGL viewer has the possibility to go as height as 10MTriangles/Grid 500 (such objects however require more than 15G of RAM or more than 1G of hard drive space for the equivalent .OBJ file).
2) Add possibility to export the "Minimal topology" as an .OBJ file: A new table for the Marching Cube algorithm was made from scratch (released under the GPL licence, we dont think such table is available on the net) that can generate a small amount of polygons compared to the original one.
3) Add Possibility to show more than one Isosurface.
4) Possibility to store/load/delete Isosurfaces formulas.
5) Possibility to turn ON/OF the new parser for fast math calculations.
5) New examples.
- Parametric:
Possibility to store/load parametric formulas.
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Added: 2007-06-14 License: GPL (GNU General Public License) Price:
863 downloads
Medical Imaging Interaction Toolkit 0.6

Medical Imaging Interaction Toolkit 0.6


Medical Imaging Interaction Toolkit aims at supporting the development of leading-edge medical imaging software. more>>
Medical Imaging Interaction Toolkit (MITK) is currently under active development, and aims at supporting the development of leading-edge medical imaging software with a high degree of interaction. It combines vtk, itk and the pic-based-libraries of the Div.
Main features:
- multiple, consistent views on the same data. For example, when you have three orthogonal 2D-views and a 3D view and data consisting of a green surface, the surface will be visible and green in all views (as contour lines in 2D, as a surface in 3D), and when you move the surface, it will move in all views. When you try to realize this with basic vtk, you will need to coordinate the position/orientation/color/... of all the views somewhere in your program - exactly this can mitk do for you.
- interactions that create and/or modify data (not only actors as in basic vtk)
- complex interactions with multiple states, e.g., for interaction with active contours
- undo/redo of interactions
- organization of data objects in a tree at run-time, e.g., to represent logical dependencies (e.g., a heart cavity is a part of the heart) or to control the rendering process
- additional properties of arbitrary type can be assigned to data objects contained in the data tree
- visualization and interaction with 3D+t data (basic vtk can handle only 3D data and itk is not for visualization and interaction)
- although mitk is mainly a toolkit and not an application, it offers some support on the application-level, e.g, for structured combination of modules (so-called functionalities), e.g., for combining and switching between one functionality for segmentation and another for registration.
Enhancements:
- New functionalities: IsoSurface, ViewInitialization and Measurement.
- Support for ITK 2.4-2.8, VTK 4.4 and 5.0.
- Lots of bugfixes and improvements, e.g. interaction for rotatable slices.
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Added: 2007-03-19 License: GPL (GNU General Public License) Price:
952 downloads
Jmol 11.2.8

Jmol 11.2.8


Jmol is a (bio)molecular viewer applet and application. more>>
Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry. Jmol is cross-platform, running on Linux/Unix, Mac OS X, and Windows systems.
- The JmolApplet is a web browser applet that can be integrated into web pages.
- The Jmol application is a standalone Java application that runs on the desktop.
- The JmolViewer is a development tool kit that can be integrated into other Java applications.
Main features:
- Free, open-source software licensed under the GNU Lesser General Public License
- Applet, Application, and Systems Integration Component
- Cross-platform
- Supports all major web browsers
- High-performance 3D rendering with no hardware requirements
- File formats
- Animations
- Vibrations
- basic unit-cell support
- schematic shapes for secondary structures
- measurements
- RasMol/Chime scripting language support
- JavaScript support library
- Exports to .jpg, .pdf, and PovRay
Jmol v10 is a complete rearchitecture and rewrite of Jmol, undertaken in the Spring of 2003, with the specific goal of developing Jmol into a replacement for the Chime Plug-in.
Jmol v10 retains most of the features and functionality of the previous Jmol releases while offering significant enhancments in the following areas:
- true 3D graphics engine that requires no special hardware
- 24 bit color with accurate lighting and shading
- substantially higher rendering performance
- handles large macromolecules with excellent performance
- protein/nucleic acid secondary structure graphics
- RasMol/Chime script compatibility
Enhancements:
- bug fix: isosurface color -- not operating for some isosurface types
- bug fix: isosurface "xxxx.cube" -- not assigning proper default colors
- bug fix: gamess reader MO fix
- bug fix: state save of STRUCTURE misplaced
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Download (8.0MB)
Added: 2007-08-17 License: LGPL (GNU Lesser General Public License) Price:
841 downloads
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