Free generic eclipse modeling system 2.0.5 01 3.0 beta 2 software for linux

The Generic Eclipse Modeling System (GEMS) is a MDD tool for Eclipse that allows for the rapid development of Draw2D plugins.
Developers specify the rules for a domain language using a metamodel and the tool generates a diagram editor plugin that enforces the rules from the metamodel.
Interpreters can then be written to traverse the model and generate code, perform analyses, or execute the model.
Whats New in 2.0.5_01 Stable Release:
- This release contains fixes to minor bugs present in 2.0.5.

Qore Eclipse IDE Plugin software allows you to develop in the Qore Programming Language within Eclipse.
Qore language syntax highlighting:
- code completion
- outline view for edited source
- launch support from within Eclipse (running Qore scripts with output displayed in Eclipse console, qore executable must be installed locally)
- generating of function documentation (alpha stage)

OpenXava project is a framework to develop easily business applications with XML and Java.
OpenXava Eclipse Plugin provides a database reverse engineering utility for the OpenXava framework.
Its virtue resides in the fact that the heart of our applications is XML instead of Java.
Main features:
- Has been used during years to develop real applications.
- High productivity for developing business applications.
- Short learning curve and easy to use.
- Flexible enough to create sophisticated applications.
- Its possible to insert your own functionality in every place.
- Based in the concept of business component.
- Adapted to work with legacy database schemas.
- Generate a full J2EE application: including User Interface and model classes (with POJOs or EJBs)
- Supports WebSphere 6.0, 5.1 and 5.0, JBoss 4.0.x and 3.2.x using native EJB CMP2 EntityBeans.
- Supports any application server (Tomcat, JBoss, WebSphere, etc) using POJOs + Hibernate.
- Supports JSR-168: All OpenXava modules are standard portlets too.
- EJB3 JPA complete support: But still BETA until 2.1
- Its tested with the portals: JetSpeed 2, WebSphere Portal and Liferay.
- Easy integration of reports made with JasperReports.
- Some little support for aspects.
- Licensed under LGPL.
- The developer can use English or Spanish.
- All labels and messages are in English, Spanish, German, Indonesian, French and Catalan, with more coming.
Enhancements:
- This is the first version, and it includes support for connecting to a database to retrieve metadata from Eclipse, full customization for generated code, and support for advanced mapping features.

Frickin PPTP Proxy is a fast PPTP proxy for any BSD system with the OpenBSD packet filter installed.
It handles bi-directional tunnels transparently and can be chained from one proxy to another over several servers.
Enhancements:
- This release fixes an endian issue with echo IDs that made the proxy unusable for a majority of users.
- There is additional information regarding a pf scrub issue in the documentation.

CodeSugar Eclipse Plugin is an Eclipse plugin that can generate methods such as equals(), clone(), toString(), and hashCode() for Java classes.
Enhancements:
- This release includes many feature enhancements in generated code, as well as UI refinements like enabling actions in the menu only when a type of .java file is selected.

mod_xslt is is an Apache 1.3.xx Module written in C. It accomplishes Apache embedded XML with XSL tranformation using Sablotron.

GENESIS (short for GEneral NEural SImulation System) is a general purpose simulation platform that was developed to support the simulation of neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, simulations of large networks, and systems-level models.

GENESIS has provided the basis for laboratory courses in neural simulation at Caltech, the Marine Biological Laboratory, the Crete, Trieste, Bangalore, and Obidos short courses in Computational Neuroscience, and at least 49 universities of which we are aware.

Most current GENESIS applications involve realistic simulations of biological neural systems. Although the software can also model more abstract networks, other simulators are more suitable for backpropagation and similar connectionist modeling.

Installation

1. Pick the place where you want to install the "genesis" directory tree. If you are making a system-wide installation as "root" user, /usr/local is a good choice. For a personal installation, without root privileges, you can use your home directory ("~"). Change to this directory and extract the genesis directory from the archive file genesis2.2.1-linux-bin.tar.gz. For example,

cd /usr/local
tar xvzf /mnt/cdrom/genesis2.2.1-linux-bin.tar.gz

or from wherever you have it (e.g.~/downloads/genesis2.2.1-linux-bin.tar.gz).

2. Change to the "genesis" directory and run the setup script that creates the ".simrc" GENESIS initialization file". Then copy .simrc to your home directory.

cd genesis
./binsetup
cp .simrc ~

3. Finallly, add the genesis directory to your search path, so that "genesis" can be found from any directory that you are in. If your login shell is bash, you can do this by editing the .bashrc file in your home directory to add the line

PATH=$PATH:/usr/local/genesis

at the end of the file. If you are using tcsh or csh as your command shell, add

set path=($path /usr/local/genesis)

to your .tcsh or .csh file.

At this point, you are ready to try running GENESIS. Change into the directory genesis/Scripts and try some of the tutorials suggested in the README file.

E-Cell System is a concept of constructing virtual cells on computers.
E-Cell System is an object-oriented software suite for modeling, simulation, and analysis of large scale complex systems such as biological cells, architected by Kouichi Takahashi and written by a wonderful team of developers. Core part of the system, E-Cell Simulation Environment version 3, allows many components driven by multiple algorithms with different timescales to coexist.
E-Cell Project is an international research project aiming at developing necessary theoretical supports, technologies and software platforms to allow precise whole cell simulation.
E-Cell System consists of the following three major parts:
- E-Cell Simulation Environment (or E-Cell SE)
- E-Cell Modeling Environment (or E-Cell ME)
- E-Cell Analysis Toolkit
Main features:
Basic capabilities
- Object-oriented modeling and simulation of complex systems.
- Plug-in architecture. New user-object classes can be developed, dynamically loaded, and used in simulation.
- Real-time user interaction and visualization during the simulation.
Scripting
- Python scripting of a simulation session (run/stop/parameter manipulation/data processing etc...).
- Python scripting of a simulation experiment that involves many runs of the simulation sessions (such as parameter tuning, metabolic control analysis etc..)
- Python scripting of model file generation (e.g. for automated model construction from databases).
Compatibilities
- SBML level 1/2 importing.
- SBML level 1/2 exporting.
Parallel computation
- Shared-memory, multi-thread parallelization of a single simulation session. (to be merged into the main branch.)
- Cluster and grid distributed computation of multiple simulation sessions. Sun Grid Engine, (Globus toolkit).
Enhancements:
- This release includes improved ODE/DAE solvers, support for numpy, an updated empy preprocessor, and some more minor improvements.