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Lingua::Phonology::Features 0.32
Lingua::Phonology::Features is a module to handle a set of hierarchical features. more>>
Lingua::Phonology::Features is a module to handle a set of hierarchical features.
SYNOPSIS
use Lingua::Phonology;
my $phono = new Lingua::Phonology;
my $features = $phono->features;
# Add features programmatically
$features->add_feature(
Node => { type => privative, children => [Scalar, Binary, Privative] },
Scalar => { type => scalar },
Binary => { type => binary },
Privative => { type => privative }
);
# Drop features
$features->drop_feature(Privative);
# Load feature definitions from a file
$features->loadfile(phono.xml);
# Load default features
$features->loadfile;
Lingua::Phonology::Features allows you to create a hierarchy of features of various types, and includes methods for adding and deleting features and changing the relationships between them.
By "heirarchical features" we mean that some features dominate some other features, as in a tree. By having heirarchical features, it becomes possible to set multiple features at once by assigning to a node, and to indicate conceptually related features that are combined under the same node. This module, however, does not instantiate values of features, but only establishes the relationships between features.
Lingua::Phonology::Features recognizes multiple types of features. Features may be privative (which means that their legal values are either true or undef), binary (which means they may be true, false, or undef), or scalar (which means that their legal value may be anything). You can freely mix different kinds of features into the same set of features.
Finally, while this module provides a full set of methods to add and delete features programmatically, it also provides the option of reading feature definitions from a file. This is usually faster and more convenient. The method to do this is "loadfile". Lingua::Phonology::Features also comes with an extensive default feature set.
<<lessSYNOPSIS
use Lingua::Phonology;
my $phono = new Lingua::Phonology;
my $features = $phono->features;
# Add features programmatically
$features->add_feature(
Node => { type => privative, children => [Scalar, Binary, Privative] },
Scalar => { type => scalar },
Binary => { type => binary },
Privative => { type => privative }
);
# Drop features
$features->drop_feature(Privative);
# Load feature definitions from a file
$features->loadfile(phono.xml);
# Load default features
$features->loadfile;
Lingua::Phonology::Features allows you to create a hierarchy of features of various types, and includes methods for adding and deleting features and changing the relationships between them.
By "heirarchical features" we mean that some features dominate some other features, as in a tree. By having heirarchical features, it becomes possible to set multiple features at once by assigning to a node, and to indicate conceptually related features that are combined under the same node. This module, however, does not instantiate values of features, but only establishes the relationships between features.
Lingua::Phonology::Features recognizes multiple types of features. Features may be privative (which means that their legal values are either true or undef), binary (which means they may be true, false, or undef), or scalar (which means that their legal value may be anything). You can freely mix different kinds of features into the same set of features.
Finally, while this module provides a full set of methods to add and delete features programmatically, it also provides the option of reading feature definitions from a file. This is usually faster and more convenient. The method to do this is "loadfile". Lingua::Phonology::Features also comes with an extensive default feature set.
Download (0.098MB)
Added: 2006-06-13 License: Perl Artistic License Price:
1228 downloads
Gimp::Feature 1.211
Gimp::Feature is a Perl module that can check for specific features to be present before registering the script. more>>
Gimp::Feature is a Perl module that can check for specific features to be present before registering the script.
SYNOPSIS
use Gimp::Feature;
or
use Gimp::Feature qw(feature1 feature2 ...);
This module can be used to check for specific features to be present. This can be used to deny running the script when neccessary features are not present. While some features can be checked for at any time, the Gimp::Fu module offers a nicer way to check for them.
gtk
checks for the presence of the gtk interface module.
gtk-1.1, gtk-1.2
checks for the presence of gtk-1.1 (1.2) or higher.
perl-5.005
checks for perl version 5.005 or higher.
pdl
checks for the presence of a suitable version of PDL (>=1.9906).
gnome
checks for the presence of the Gnome-Perl module.
gtkxmhtl
checks for the presence of the Gtk::XmHTML module.
unix
checks wether the script runs on a unix-like operating system. At the moment, this is every system except windows, macos, os2 and vms.
persistency
checks wether the Gimp::Data module (Gimp::Data) can handle complex persistent data structures, i.e. perl references in addition to plain strings.
The following features can only be checked after Gimp-main> has been called (usually found in the form exit main). See Gimp::Fu on how to check for these.
gimp-1.1, gimp-1.2
checks for the presense of gimp in at least version 1.1 (1.2).
FUNCTIONS
present(feature)
Checks for the presense of the single feature given as the argument. Returns true if the feature is present, false otherwise.
need(feature,[function-name])
Require a specific feature. If the required feature is not present the program will exit gracefully, logging an appropriate message. You can optionally supply a function name to further specify the place where this feature was missing.
This is the function used when importing symbols from the module.
missing(feature-description,[function-name])
Indicates that a generic feature (described by the first argument) is missing. A function name can further be specified. This function will log the given message and exit gracefully.
describe(feature)
Returns a string describing the given feature in more detail, or undef if there is no description for this feature.
list()
Returns a list of features that can be checked for. This list might not be complete.
<<lessSYNOPSIS
use Gimp::Feature;
or
use Gimp::Feature qw(feature1 feature2 ...);
This module can be used to check for specific features to be present. This can be used to deny running the script when neccessary features are not present. While some features can be checked for at any time, the Gimp::Fu module offers a nicer way to check for them.
gtk
checks for the presence of the gtk interface module.
gtk-1.1, gtk-1.2
checks for the presence of gtk-1.1 (1.2) or higher.
perl-5.005
checks for perl version 5.005 or higher.
pdl
checks for the presence of a suitable version of PDL (>=1.9906).
gnome
checks for the presence of the Gnome-Perl module.
gtkxmhtl
checks for the presence of the Gtk::XmHTML module.
unix
checks wether the script runs on a unix-like operating system. At the moment, this is every system except windows, macos, os2 and vms.
persistency
checks wether the Gimp::Data module (Gimp::Data) can handle complex persistent data structures, i.e. perl references in addition to plain strings.
The following features can only be checked after Gimp-main> has been called (usually found in the form exit main). See Gimp::Fu on how to check for these.
gimp-1.1, gimp-1.2
checks for the presense of gimp in at least version 1.1 (1.2).
FUNCTIONS
present(feature)
Checks for the presense of the single feature given as the argument. Returns true if the feature is present, false otherwise.
need(feature,[function-name])
Require a specific feature. If the required feature is not present the program will exit gracefully, logging an appropriate message. You can optionally supply a function name to further specify the place where this feature was missing.
This is the function used when importing symbols from the module.
missing(feature-description,[function-name])
Indicates that a generic feature (described by the first argument) is missing. A function name can further be specified. This function will log the given message and exit gracefully.
describe(feature)
Returns a string describing the given feature in more detail, or undef if there is no description for this feature.
list()
Returns a list of features that can be checked for. This list might not be complete.
Download (0.26MB)
Added: 2006-07-13 License: Perl Artistic License Price:
1201 downloads
Bio::DB::GFF::Feature 1.4
Bio::DB::GFF::Feature is a relative segment identified by a feature type. more>>
Bio::DB::GFF::Feature is a relative segment identified by a feature type.
Bio::DB::GFF::Feature is a stretch of sequence that corresponding to a single annotation in a GFF database. It inherits from Bio::DB::GFF::RelSegment, and so has all the support for relative addressing of this class and its ancestors. It also inherits from Bio::SeqFeatureI and so has the familiar start(), stop(), primary_tag() and location() methods (it implements Bio::LocationI too, if needed).
Bio::DB::GFF::Feature adds new methods to retrieve the annotations type, group, and other GFF attributes. Annotation types are represented by Bio::DB::GFF::Typename objects, a simple class that has two methods called method() and source(). These correspond to the method and source fields of a GFF file.
Annotation groups serve the dual purpose of giving the annotation a human-readable name, and providing higher-order groupings of subfeatures into features. The groups returned by this module are objects of the Bio::DB::GFF::Featname class.
Bio::DB::GFF::Feature inherits from and implements the abstract methods of Bio::SeqFeatureI, allowing it to interoperate with other Bioperl modules.
Generally, you will not create or manipulate Bio::DB::GFF::Feature objects directly, but use those that are returned by the Bio::DB::GFF::RelSegment->features() method.
Important note about start() vs end()
If features are derived from segments that use relative addressing (which is the default), then start() will be less than end() if the feature is on the opposite strand from the reference sequence. This breaks Bio::SeqI compliance, but is necessary to avoid having the real genomic locations designated by start() and end() swap places when changing reference points.
To avoid this behavior, call $segment->absolute(1) before fetching features from it. This will force everything into absolute coordinates.
For example:
my $segment = $db->segment(CHROMOSOME_I);
$segment->absolute(1);
my @features = $segment->features(transcript);
<<lessBio::DB::GFF::Feature is a stretch of sequence that corresponding to a single annotation in a GFF database. It inherits from Bio::DB::GFF::RelSegment, and so has all the support for relative addressing of this class and its ancestors. It also inherits from Bio::SeqFeatureI and so has the familiar start(), stop(), primary_tag() and location() methods (it implements Bio::LocationI too, if needed).
Bio::DB::GFF::Feature adds new methods to retrieve the annotations type, group, and other GFF attributes. Annotation types are represented by Bio::DB::GFF::Typename objects, a simple class that has two methods called method() and source(). These correspond to the method and source fields of a GFF file.
Annotation groups serve the dual purpose of giving the annotation a human-readable name, and providing higher-order groupings of subfeatures into features. The groups returned by this module are objects of the Bio::DB::GFF::Featname class.
Bio::DB::GFF::Feature inherits from and implements the abstract methods of Bio::SeqFeatureI, allowing it to interoperate with other Bioperl modules.
Generally, you will not create or manipulate Bio::DB::GFF::Feature objects directly, but use those that are returned by the Bio::DB::GFF::RelSegment->features() method.
Important note about start() vs end()
If features are derived from segments that use relative addressing (which is the default), then start() will be less than end() if the feature is on the opposite strand from the reference sequence. This breaks Bio::SeqI compliance, but is necessary to avoid having the real genomic locations designated by start() and end() swap places when changing reference points.
To avoid this behavior, call $segment->absolute(1) before fetching features from it. This will force everything into absolute coordinates.
For example:
my $segment = $db->segment(CHROMOSOME_I);
$segment->absolute(1);
my @features = $segment->features(transcript);
Download (4.7MB)
Added: 2006-06-09 License: Perl Artistic License Price:
1232 downloads
Bio::Graphics::Feature 1.4
Bio::Graphics::Feature is a simple feature object for use with Bio::Graphics::Panel. more>>
Bio::Graphics::Feature is a simple feature object for use with Bio::Graphics::Panel.
SYNOPSIS
use Bio::Graphics::Feature;
# create a simple feature with no internal structure
$f = Bio::Graphics::Feature->new(-start => 1000,
-stop => 2000,
-type => transcript,
-name => alpha-1 antitrypsin,
-desc => an enzyme inhibitor,
);
# create a feature composed of multiple segments, all of type "similarity"
$f = Bio::Graphics::Feature->new(-segments => [[1000,1100],[1500,1550],[1800,2000]],
-name => ABC-3,
-type => gapped_alignment,
-subtype => similarity);
# build up a gene exon by exon
$e1 = Bio::Graphics::Feature->new(-start=>1,-stop=>100,-type=>exon);
$e2 = Bio::Graphics::Feature->new(-start=>150,-stop=>200,-type=>exon);
$e3 = Bio::Graphics::Feature->new(-start=>300,-stop=>500,-type=>exon);
$f = Bio::Graphics::Feature->new(-segments=>[$e1,$e2,$e3],-type=>gene);
This is a simple Bio::SeqFeatureI-compliant object that is compatible with Bio::Graphics::Panel. With it you can create lightweight feature objects for drawing.
<<lessSYNOPSIS
use Bio::Graphics::Feature;
# create a simple feature with no internal structure
$f = Bio::Graphics::Feature->new(-start => 1000,
-stop => 2000,
-type => transcript,
-name => alpha-1 antitrypsin,
-desc => an enzyme inhibitor,
);
# create a feature composed of multiple segments, all of type "similarity"
$f = Bio::Graphics::Feature->new(-segments => [[1000,1100],[1500,1550],[1800,2000]],
-name => ABC-3,
-type => gapped_alignment,
-subtype => similarity);
# build up a gene exon by exon
$e1 = Bio::Graphics::Feature->new(-start=>1,-stop=>100,-type=>exon);
$e2 = Bio::Graphics::Feature->new(-start=>150,-stop=>200,-type=>exon);
$e3 = Bio::Graphics::Feature->new(-start=>300,-stop=>500,-type=>exon);
$f = Bio::Graphics::Feature->new(-segments=>[$e1,$e2,$e3],-type=>gene);
This is a simple Bio::SeqFeatureI-compliant object that is compatible with Bio::Graphics::Panel. With it you can create lightweight feature objects for drawing.
Download (4.7MB)
Added: 2006-10-21 License: Perl Artistic License Price:
1098 downloads
KDE Trash 2.0
KDE Trash theme shows the state of the KDE Trash with a big icon. more>>
KDE Trash theme shows the state of the KDE Trash with a big icon.
Main features:
- Themes
- Languages
<<lessMain features:
- Themes
- Languages
Download (0.040MB)
Added: 2006-06-23 License: Common Public License Price:
1219 downloads
TkHearts 0.80
TkHearts is an clone of the Hearts card game. more>>
TkHearts is an clone of the Hearts card game. The AI is currently not fantastic.
Steven A has made a few changes with reguards to window handling, look and feel and features.
<<lessSteven A has made a few changes with reguards to window handling, look and feel and features.
Download (0.095MB)
Added: 2006-09-11 License: GPL (GNU General Public License) Price:
1140 downloads
VultureNG 1.1.1
VultureNG is reverse proxy based on Apache and mod_perl. more>>
VultureNG is reverse proxy based on Apache and mod_perl. VultureNG proxy brings many security-related features, such as authentication (LDAP, SQL, SSL) and authentication forwarding (SSO), content filtering, flow encryption, URL rewriting, and load balancing.
<<less Download (0.47MB)
Added: 2006-02-03 License: GPL (GNU General Public License) Price:
1358 downloads
MFbyAS 2.0
MFbyAS is an Italian Web-based financial monitoring system. more>>
MFbyAS is an Italian Web-based financial monitoring system.
Main features:
- balance sheets
- indices
- reclassifications
- trend diagrams
- a modeling system to make your own algorithms
- sheets
- indices
<<lessMain features:
- balance sheets
- indices
- reclassifications
- trend diagrams
- a modeling system to make your own algorithms
- sheets
- indices
Download (MB)
Added: 2007-01-08 License: GPL (GNU General Public License) Price:
1020 downloads
ctris 0.42
ctris is a colorized, small and flexible Tetris(TM)-clone for the console. more>>
ctris is a colorized, small and flexible Tetris-clone for the console
The project also has some small special features. (e.g. a highscore-list).
Installation:
make
su -
make install
<<lessThe project also has some small special features. (e.g. a highscore-list).
Installation:
make
su -
make install
Download (0.013MB)
Added: 2006-12-23 License: GPL (GNU General Public License) Price:
1036 downloads
HartMath 0.8 pre2
HartMath is a symbolic mathematics tool. more>>
HartMath is an experimental computer algebra program written in Java.
It features big number arithmetic, symbolic and numeric evaluation, plot-, polynomial-, vector, and matrix-functions.
<<lessIt features big number arithmetic, symbolic and numeric evaluation, plot-, polynomial-, vector, and matrix-functions.
Download (1.75MB)
Added: 2005-06-06 License: GPL (GNU General Public License) Price:
1601 downloads
CurlyAnkles 0.1.7
CurlyAnkles is a versatile library written in C on GNU/Linux. more>>
CurlyAnkles is a versatile library written in C on GNU/Linux. CurlyAnkles has been written for GTK/GNOME and features a number of advanced features not found in the base GTK library. These include docking widgets and customisable toolbars and menus.
<<less Download (2.3MB)
Added: 2007-07-28 License: GPL (GNU General Public License) Price:
818 downloads
Gewels 1.0.0
Gewels project consists of the Gnome version of Jewels. more>>
Gewels project consists of the Gnome version of Jewels.
Main features:
- smooth playing
- simultaneous game of two players
- deadmatch mode for two players
- deadmatch against computer
<<lessMain features:
- smooth playing
- simultaneous game of two players
- deadmatch mode for two players
- deadmatch against computer
Download (0.27MB)
Added: 2006-12-26 License: GPL (GNU General Public License) Price:
1040 downloads
Exam4Fun 0.45
Exam4Fun is an examination program designed to test your vocabulary. more>>
Exam4Fun is an examination program designed to test your vocabulary.
Exam4Fun project allows user to create their own sets of questions and choose from different type of exam(Flashcard, etc.).
Several features will be added to this quiz program.
<<lessExam4Fun project allows user to create their own sets of questions and choose from different type of exam(Flashcard, etc.).
Several features will be added to this quiz program.
Download (0.25MB)
Added: 2006-11-01 License: GPL (GNU General Public License) Price:
1196 downloads
talkative 0.4
talkative project is a simple XMPP/Jabber client. more>>
talkative project is a simple XMPP/Jabber client. It is written in Mono/C# and uses GTK+ GUI toolkit. It is designed to interoperate well with GNOME desktop environment.
Main features:
- Chats & Messages
- Support for multiple accounts
- Avatars
<<lessMain features:
- Chats & Messages
- Support for multiple accounts
- Avatars
Download (1.2MB)
Added: 2007-07-06 License: GPL (GNU General Public License) Price:
843 downloads
ftp4che 0.7.1
ftp4che is an FTP library for Java 1.4 and 5.0 that features support for implicit SSL. more>>
ftp4che is an FTP library for Java 1.4 and 5.0 that features support for implicit SSL, implicit AUTH SSL, AUTH TLS, TLS, FXP, PRET, SSCN, an event model, bandwidth control, and unlimited file sizes.
<<less Download (0.87MB)
Added: 2007-05-22 License: LGPL (GNU Lesser General Public License) Price:
888 downloads
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