et pro 3.2.6
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ET Pro 3.2.6
ET Pro is a the Enemy Territory Competition Mod. more>>
ET Pro is a mod specifically targeted at competition play, with features specifically designed for administration of competition servers.
ET Pro has been chosen as the official tournament mod for STA, TWL, CAL, Clanbase, and ESL.
The official IRC channel for ET Pro is #etpro on irc.freenode.net
The ET Pro development team would like to extend thanks to the following who contributed significantly to the development of 2.0.0, without their help ET Pro would not be where it is today!
Enhancements:
Bug/Exploit Fixes
- Ammopacks/medpacks no longer "bounce off" players if you are too close
- Mounted tank browning/mg42 no longer fires low
- K43/Garand unlimited grenade ammo exploit fixed
- Spectating/demoplayback/multiview mg42/mortar viewpoints are much more accurate now
- Battery mapscript - autospawn now works for west bunker captures
- Compass now clips map icons correctly
- Server no longer drops clients who havent loaded completely on map_restart
- Prone hitboxes fixed
- Mine flags no longer block other mines from being spotted
Optimizations
- Corpses and items no longer eat bandwidth when disappearing
- Unused code removed. server takes 1.3m less memory and less cpu
Gameplay
- Multiview from OSP
- Wounded players now take 113 damage (6 shots) instead of 75 to force into limbo
- Refs who have logged in via password may pass or cancel votes by voting yes or no on a vote.
<<lessET Pro has been chosen as the official tournament mod for STA, TWL, CAL, Clanbase, and ESL.
The official IRC channel for ET Pro is #etpro on irc.freenode.net
The ET Pro development team would like to extend thanks to the following who contributed significantly to the development of 2.0.0, without their help ET Pro would not be where it is today!
Enhancements:
Bug/Exploit Fixes
- Ammopacks/medpacks no longer "bounce off" players if you are too close
- Mounted tank browning/mg42 no longer fires low
- K43/Garand unlimited grenade ammo exploit fixed
- Spectating/demoplayback/multiview mg42/mortar viewpoints are much more accurate now
- Battery mapscript - autospawn now works for west bunker captures
- Compass now clips map icons correctly
- Server no longer drops clients who havent loaded completely on map_restart
- Prone hitboxes fixed
- Mine flags no longer block other mines from being spotted
Optimizations
- Corpses and items no longer eat bandwidth when disappearing
- Unused code removed. server takes 1.3m less memory and less cpu
Gameplay
- Multiview from OSP
- Wounded players now take 113 damage (6 shots) instead of 75 to force into limbo
- Refs who have logged in via password may pass or cancel votes by voting yes or no on a vote.
Download (3.5MB)
Added: 2006-12-26 License: GPL (GNU General Public License) Price:
663 downloads
PHP Photo Album 0.3.2.6
PHP Photo Album provides an easy to install and run PHP Photo Album/Gallery script. more>>
PHP Photo Album provides an easy to install and run PHP Photo Album/Gallery script.
It is easy to install and run PHP Photo Album/Gallery script. No database required. Automatic installation on your FTP-server with just a few clicks. You have in a seconds functional phpAlbum.
Caching of all generated thumbnails and resized photos, password directory protection, access logs, automatic thumbnails generation, short and longer description of directories and photos, admin section for creating new directories, uploading photos and deleting of them. Works also with safe_mode="on" because of using FTP.
Separated Layout(HTML) code from functional one. Two themes aviable, more under construction. Higly customizable colors and texts. Logo generator. And many new features comming soon ... so try it!
Main features:
- Automatic generation of thumbnails and resized
- Commenting of pictures with antispam security code
- Screenshots for files to be downloaded, movie, audio, exe or whatever
- Password protection for your private galleries
- Admin section for creating new directories, uploading photos (works even with PHP safe_mode=on)
- NEW! Uploading ZIP Files preserving directory structure
- Short and long description of galleries/directories and photos
- Highly customizable layout, separated layout(HTML) from functional code, this allows easy creation of new themes
- Caching of all generated thumbnails and resized photos
- Transparent logo and icon processing with any background color, including IE6
- Access logging, with exclude strings
- And last but not least, you can help us with your suggestions to create usable, easy to install, php photo album script.
<<lessIt is easy to install and run PHP Photo Album/Gallery script. No database required. Automatic installation on your FTP-server with just a few clicks. You have in a seconds functional phpAlbum.
Caching of all generated thumbnails and resized photos, password directory protection, access logs, automatic thumbnails generation, short and longer description of directories and photos, admin section for creating new directories, uploading photos and deleting of them. Works also with safe_mode="on" because of using FTP.
Separated Layout(HTML) code from functional one. Two themes aviable, more under construction. Higly customizable colors and texts. Logo generator. And many new features comming soon ... so try it!
Main features:
- Automatic generation of thumbnails and resized
- Commenting of pictures with antispam security code
- Screenshots for files to be downloaded, movie, audio, exe or whatever
- Password protection for your private galleries
- Admin section for creating new directories, uploading photos (works even with PHP safe_mode=on)
- NEW! Uploading ZIP Files preserving directory structure
- Short and long description of galleries/directories and photos
- Highly customizable layout, separated layout(HTML) from functional code, this allows easy creation of new themes
- Caching of all generated thumbnails and resized photos
- Transparent logo and icon processing with any background color, including IE6
- Access logging, with exclude strings
- And last but not least, you can help us with your suggestions to create usable, easy to install, php photo album script.
Download (0.19MB)
Added: 2007-04-24 License: GPL (GNU General Public License) Price:
932 downloads
ET Live 1.21
ET Live is a live viewer server for RTCW: Enemy Territory. more>>
ET Live project is a live viewer server for "RTCW: Enemy Territory".
Main features:
- Shows whos playing on your server, team, xp, and ping
- Shows current map.
- Makes a crude attempt to determine whos winning.
- Links player name to a systats db. (Optional)
<<lessMain features:
- Shows whos playing on your server, team, xp, and ping
- Shows current map.
- Makes a crude attempt to determine whos winning.
- Links player name to a systats db. (Optional)
Download (0.082MB)
Added: 2006-12-12 License: GPL (GNU General Public License) Price:
1047 downloads
UnrealIRCd 3.2.6
UnrealIRCd is an Open Source IRC Server. more>>
UnrealIRCd is an Open Source IRC Server. Development of UnrealIRCd began in May of 1999. Unreal was created from the Dreamforge IRCd that was formerly used by the DALnet IRC Network.
Over the years, many new and exciting features have been added to Unreal. UnrealIRCd is hard to even see a resemblance between the current Unreal and Dreamforge.
Main features:
- Channel Half-ops (+h)
- Channel Owners (+q) and Channel Admins (+a)
- Channel linking (+L)
- Advanced anti-flood and anti-spam systems
- Swear filtering (+G)
- Hostname cloaking (+x)
- Color blocking and stripping (+c/+S)
- Vhosts
- WebTV Support
- DCCDeny
- Ziplinks
- SSL encrypted client and server connections
- Advanced and highly configurable configuration file
- Module support
- And Much More...
Unreal can run on several operating systems. Unreal works on most *nix OSes including Linux, BSD, MacOS X, Solaris, and HP-UX. Unreal also works on Windows (NT4/2K/XP/2003). UnrealIRCd is designed to be an advanced IRCd, so it is probably not the best choice for beginners.
Enhancements:
- This release comes with over 80 changes.
- Many small bugs have been fixed, and a couple of major bugs as well.
- No new major features were added. It is recommended for everyone to upgrade.
<<lessOver the years, many new and exciting features have been added to Unreal. UnrealIRCd is hard to even see a resemblance between the current Unreal and Dreamforge.
Main features:
- Channel Half-ops (+h)
- Channel Owners (+q) and Channel Admins (+a)
- Channel linking (+L)
- Advanced anti-flood and anti-spam systems
- Swear filtering (+G)
- Hostname cloaking (+x)
- Color blocking and stripping (+c/+S)
- Vhosts
- WebTV Support
- DCCDeny
- Ziplinks
- SSL encrypted client and server connections
- Advanced and highly configurable configuration file
- Module support
- And Much More...
Unreal can run on several operating systems. Unreal works on most *nix OSes including Linux, BSD, MacOS X, Solaris, and HP-UX. Unreal also works on Windows (NT4/2K/XP/2003). UnrealIRCd is designed to be an advanced IRCd, so it is probably not the best choice for beginners.
Enhancements:
- This release comes with over 80 changes.
- Many small bugs have been fixed, and a couple of major bugs as well.
- No new major features were added. It is recommended for everyone to upgrade.
Download (2.4MB)
Added: 2006-12-23 License: GPL (GNU General Public License) Price:
1061 downloads
IControl 0.1.0
Control is a remote control daemon for Creatives RM-900 remote and Live!Drive Receiver. more>>
IControl is a software program meant to interpret signals from Creatives RM-900 remote control and accompanying IR LiveDrive! receiver unit.
IControl is currently capable of sending input to various programs (including XMMS, Xine, XawTV, XScreensaver, et al), as well as circulating window stacking order (sending windows to the background) and changing input focus. Furthermore, IControl will soon support other remote controls beyond the RM-900 which are all interpretable by the LiveDrive! unit.
IControl is completely configurable through its .conf files, allowing the user to map any key to any action the rcontrol daemon supports. And development is in the works to allow IControl to start programs, interface with devices, or even shut the computer down.
<<lessIControl is currently capable of sending input to various programs (including XMMS, Xine, XawTV, XScreensaver, et al), as well as circulating window stacking order (sending windows to the background) and changing input focus. Furthermore, IControl will soon support other remote controls beyond the RM-900 which are all interpretable by the LiveDrive! unit.
IControl is completely configurable through its .conf files, allowing the user to map any key to any action the rcontrol daemon supports. And development is in the works to allow IControl to start programs, interface with devices, or even shut the computer down.
Download (0.026MB)
Added: 2005-04-20 License: GPL (GNU General Public License) Price:
1648 downloads
WMnet 1.06
WMnet is a little X dock.app network monitor I wrote for Linux. more>>
WMnet is a little WindowMaker dockapp network monitor I wrote for Linux.
It was originally inspired by that funky program tleds that blinks your keyboard LEDs in response to net traffic, but its a lot more entertaining than that nowadays.
I wrote this thing with low cpusage, low memory, and efficient use of screen real-estate in mind.
This little program polls network statistics and does a few things with the data it gets. It has small blinking lights for the rx and tx of IP packets, a digital speedometer of your polled stats current speed and a bar graph like xload et. al which has a tx speed graph from bottom-up and rx speed graph from the top-down.
The speedometer keeps track of the current speed per second and shows it in a color corresponding to which of rx or tx that has the highest speed at the moment. Also, the graph is drawn in a way that the highest speed is drawn on top of the other while the other is in the background. Depending on whether you are running ppp or ethernet
connections, you should set the -x parameter to about 1.5 times the high speed of your connection... the default is 6000 which will be stupid if youre on a ethernet line with a max of about 800 kb/sec.
Ive found the best for an ethernet line is -x 10000000 -l Having the logarithmic scale lets you see any speed of traffic from a telnet session to downloadeding something from across the hall at 600 kb/sec.
I tried to keep this is as small and efficient as possible CPU time on my K5 PR100 with the default poll time of 25000 microseconds (1 microsecond == 1 millionth of a second.) is less than 20 seconds per 24 hours Which is less than even wmmixer uses for me.
wmnet now uses drivers to get stats. The existing stat driver from previous versions has been moved to the ipfwadm driver. To get some generic IP accounting rules using ipfwadm:
ipfwadm -A in -i -S 0.0.0.0/0
ipfwadm -A out -i -D 0.0.0.0/0
<<lessIt was originally inspired by that funky program tleds that blinks your keyboard LEDs in response to net traffic, but its a lot more entertaining than that nowadays.
I wrote this thing with low cpusage, low memory, and efficient use of screen real-estate in mind.
This little program polls network statistics and does a few things with the data it gets. It has small blinking lights for the rx and tx of IP packets, a digital speedometer of your polled stats current speed and a bar graph like xload et. al which has a tx speed graph from bottom-up and rx speed graph from the top-down.
The speedometer keeps track of the current speed per second and shows it in a color corresponding to which of rx or tx that has the highest speed at the moment. Also, the graph is drawn in a way that the highest speed is drawn on top of the other while the other is in the background. Depending on whether you are running ppp or ethernet
connections, you should set the -x parameter to about 1.5 times the high speed of your connection... the default is 6000 which will be stupid if youre on a ethernet line with a max of about 800 kb/sec.
Ive found the best for an ethernet line is -x 10000000 -l Having the logarithmic scale lets you see any speed of traffic from a telnet session to downloadeding something from across the hall at 600 kb/sec.
I tried to keep this is as small and efficient as possible CPU time on my K5 PR100 with the default poll time of 25000 microseconds (1 microsecond == 1 millionth of a second.) is less than 20 seconds per 24 hours Which is less than even wmmixer uses for me.
wmnet now uses drivers to get stats. The existing stat driver from previous versions has been moved to the ipfwadm driver. To get some generic IP accounting rules using ipfwadm:
ipfwadm -A in -i -S 0.0.0.0/0
ipfwadm -A out -i -D 0.0.0.0/0
Download (0.027MB)
Added: 2006-10-30 License: GPL (GNU General Public License) Price:
1091 downloads
tvmet 1.7.2
tvmet is a Vector and Matrix template library uses Meta Templates and Expression Templates to evaluate results at compile time. more>>
tvmet is a Vector and Matrix template library that uses Meta Templates and Expression Templates (ET) to evaluate results at compile time, thus making it fast for low-end systems.
Temporaries are avoided because of this. The produced code is similar to hand-coded code, but the quality of the code still depends on the compiler and its version. The dimensions for vectors and matrices are static and bounded at compile time using template arguments.
Main features:
- Matrices and Vectors with fixed sizes (of course), the data is stored in a static array.
- compile time dimension check for Vectors and Matrices to preserve the mathematical meaning.
- vector, matrix, matrix-matrix and matrix-vector fast operations:
- complete set of standard arithmetic operations for Vectors and Matrices (blitz++ supports this only for TinyVector).
- complete set of standard compare operations for Vectors and Matrices as well as ternary functions like a ? b : c (see eval for use).
- binary and unary operations.
- meta template use for Matrix-Matrix-Product $M,M$, Matrix-Transpose $M^T$ and Matrix-Vector-Product $M,x$ functions and operators.
- meta template for special functions like $M^T, x$, $M^T,M$, $M,M^T$ and $(M,M)^T$ functions, see ... special Meta-Template Functions.
- simple Matrix rows and column access as a Vector.
- chaining of matrix and vector expressions is possible and working.
- Vector inner and outer product (dot and cross product).
- special handling for the aliasing problem - see ... about aliasing.
- STL iterator interface. This opens the door to all sorts of great STL applications.
- type promotion (for handling Matrices and Vectors of differing types).
- works on self defined types such as the std::complex type.
- makes no use of exceptions. Therefore you can use it for embedded systems or in Linux kernel space.
- nice expression level printing for debugging purposes (print the expanded expression tree).
- good documentation with examples.
- regression tests for nearly all operations and functions.
- support for several compilers (see Compiler Support).
- written as a pure class and template library, no binary libraries and versioning are needed - designed to avoid code blot due to the use of templates.
- ISO/IEC 14882:1998 compliant.
<<lessTemporaries are avoided because of this. The produced code is similar to hand-coded code, but the quality of the code still depends on the compiler and its version. The dimensions for vectors and matrices are static and bounded at compile time using template arguments.
Main features:
- Matrices and Vectors with fixed sizes (of course), the data is stored in a static array.
- compile time dimension check for Vectors and Matrices to preserve the mathematical meaning.
- vector, matrix, matrix-matrix and matrix-vector fast operations:
- complete set of standard arithmetic operations for Vectors and Matrices (blitz++ supports this only for TinyVector).
- complete set of standard compare operations for Vectors and Matrices as well as ternary functions like a ? b : c (see eval for use).
- binary and unary operations.
- meta template use for Matrix-Matrix-Product $M,M$, Matrix-Transpose $M^T$ and Matrix-Vector-Product $M,x$ functions and operators.
- meta template for special functions like $M^T, x$, $M^T,M$, $M,M^T$ and $(M,M)^T$ functions, see ... special Meta-Template Functions.
- simple Matrix rows and column access as a Vector.
- chaining of matrix and vector expressions is possible and working.
- Vector inner and outer product (dot and cross product).
- special handling for the aliasing problem - see ... about aliasing.
- STL iterator interface. This opens the door to all sorts of great STL applications.
- type promotion (for handling Matrices and Vectors of differing types).
- works on self defined types such as the std::complex type.
- makes no use of exceptions. Therefore you can use it for embedded systems or in Linux kernel space.
- nice expression level printing for debugging purposes (print the expanded expression tree).
- good documentation with examples.
- regression tests for nearly all operations and functions.
- support for several compilers (see Compiler Support).
- written as a pure class and template library, no binary libraries and versioning are needed - designed to avoid code blot due to the use of templates.
- ISO/IEC 14882:1998 compliant.
Download (MB)
Added: 2007-06-26 License: LGPL (GNU Lesser General Public License) Price:
852 downloads
PyMOlyze 2.0
PyMOlyze is a program to analyze the results of quantum chemistry (DFT) calculations. more>>
PyMOlyze project can analyze the results of quantum chemistry (DFT) calculations. Gaussian 03 and Jaguar 6.0 files are supported.
The following analyses are available for user-defined molecular fragments:
- Mulliken Population Analysis (MPA)
- C-squared Population Analysis (SCPA)
- Density of States (DOS) plots
- Overlap Population Analysis
- Overlap Population DOS
PyMOlyze was inspired by AOMix, which is a console-based, Windows-only program that has features including (and in addition to) those listed above. I wrote PyMOlyze because I wanted a user-friendly Linux program to do MPA for each molecular orbital of Gaussian calculations. If PyMOlyze doesnt address your needs, check out AOMix (or shoot me an email and well talk).
Python, the python extensions to Qt and Qwt (PyQt and PyQwt), and some C++ functions (for speed optimizations) were used to create PyMOlyze; therefore it should run on pretty much any modern platform with minor modifications. It has only been tested on Windows XP, Windows 2000, and Gentoo Linux, but there is no reason for it not to be supported on any platform with python, PyQt, and PyQwt available.
Enhancements:
- OpenGL 3D rendering
- Atom is highlighted in 3D when choosing an atom/orbital for population analysis
- Observe structural changes during an optimization
- Cartesian coordinate editor (any step of the optimization)
- Functions for translating or rotating a molecule
- Center molecule on an atom
- Rotate molecule so that two atoms are along an axis
- Rotate moelcule so that three atoms lie in a plane
- Save structures as XYZ, PDB, internal coordinates, etc.
- Charge Decomposition Analysis (using the method developed by Frenking et al.)
- Fragment Analysis to study bonding interactions by determining contributions of fragment MOs to molecular MOs
<<lessThe following analyses are available for user-defined molecular fragments:
- Mulliken Population Analysis (MPA)
- C-squared Population Analysis (SCPA)
- Density of States (DOS) plots
- Overlap Population Analysis
- Overlap Population DOS
PyMOlyze was inspired by AOMix, which is a console-based, Windows-only program that has features including (and in addition to) those listed above. I wrote PyMOlyze because I wanted a user-friendly Linux program to do MPA for each molecular orbital of Gaussian calculations. If PyMOlyze doesnt address your needs, check out AOMix (or shoot me an email and well talk).
Python, the python extensions to Qt and Qwt (PyQt and PyQwt), and some C++ functions (for speed optimizations) were used to create PyMOlyze; therefore it should run on pretty much any modern platform with minor modifications. It has only been tested on Windows XP, Windows 2000, and Gentoo Linux, but there is no reason for it not to be supported on any platform with python, PyQt, and PyQwt available.
Enhancements:
- OpenGL 3D rendering
- Atom is highlighted in 3D when choosing an atom/orbital for population analysis
- Observe structural changes during an optimization
- Cartesian coordinate editor (any step of the optimization)
- Functions for translating or rotating a molecule
- Center molecule on an atom
- Rotate molecule so that two atoms are along an axis
- Rotate moelcule so that three atoms lie in a plane
- Save structures as XYZ, PDB, internal coordinates, etc.
- Charge Decomposition Analysis (using the method developed by Frenking et al.)
- Fragment Analysis to study bonding interactions by determining contributions of fragment MOs to molecular MOs
Download (0.034MB)
Added: 2007-01-28 License: GPL (GNU General Public License) Price:
1003 downloads
PerlPrimer 1.1.14
PerlPrimer is a free, open-source GUI application written in Perl. more>>
PerlPrimer is a free, open-source GUI application written in Perl that designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR) and sequencing. PerlPrimer aims to automate and simplify the process of primer design.
Main features:
- Calculation of possible primer-dimers
- Retrieval of genomic or cdna sequences from Ensembl (including both sequences automatically for QPCR)
- Ability to BLAST search primers using the NCBI server or a local server
- Results can be saved or optionally exported in a tab-delimited format that is compatible with most spreadsheet applications.
- ORF and CpG island detection algorithms
- Ability to add cloning sequences to primers, automatically adjusted to be in-frame
- QPCR primer design without manual intron-exon boundary entry
PerlPrimer calculates primer melting temperature using J. SantaLucias extensive nearest-neighbour thermodynamic parameters. To adjust for the salt conditions of the PCR, PerlPrimer uses the empirical formula derived by von Ahsen, et al. (2001) and allows the user to specify the concentration of Mg2+, dNTPs and primers, or use standard PCR conditions. The result is a highly accurate prediction of primer melting temperature, giving rise to a maximum yeild of product when amplified.
PerlPrimer is written in Perl and Perl/Tk. In addition, for QPCR functionality PerlPrimer uses the open-source Spidey executable from NCBI, and restriction enzyme data from the REBASE project is used when adding cloning sites. The program is designed to be cross-platform compatible and has been developed and tested on both Microsoft Windows and GNU/Linux-based operating systems. Users have also reported success using the program under Mac OS X.
Enhancements:
- Ensembl compatibility restored once again (slight change in the searchview output was causing problems)
<<lessMain features:
- Calculation of possible primer-dimers
- Retrieval of genomic or cdna sequences from Ensembl (including both sequences automatically for QPCR)
- Ability to BLAST search primers using the NCBI server or a local server
- Results can be saved or optionally exported in a tab-delimited format that is compatible with most spreadsheet applications.
- ORF and CpG island detection algorithms
- Ability to add cloning sequences to primers, automatically adjusted to be in-frame
- QPCR primer design without manual intron-exon boundary entry
PerlPrimer calculates primer melting temperature using J. SantaLucias extensive nearest-neighbour thermodynamic parameters. To adjust for the salt conditions of the PCR, PerlPrimer uses the empirical formula derived by von Ahsen, et al. (2001) and allows the user to specify the concentration of Mg2+, dNTPs and primers, or use standard PCR conditions. The result is a highly accurate prediction of primer melting temperature, giving rise to a maximum yeild of product when amplified.
PerlPrimer is written in Perl and Perl/Tk. In addition, for QPCR functionality PerlPrimer uses the open-source Spidey executable from NCBI, and restriction enzyme data from the REBASE project is used when adding cloning sites. The program is designed to be cross-platform compatible and has been developed and tested on both Microsoft Windows and GNU/Linux-based operating systems. Users have also reported success using the program under Mac OS X.
Enhancements:
- Ensembl compatibility restored once again (slight change in the searchview output was causing problems)
Download (0.34MB)
Added: 2006-10-18 License: GPL (GNU General Public License) Price:
1102 downloads
EasyEclipse for Python 1.2.2
EasyEclipse for Python is for Python development. more>>
EasyEclipse for Python is for Python development.
This distribution includes the following plugins:
Core components:
- Eclipse Platform 3.2.1 - Shared platform services from Eclipse.
- Eclipse Tools 3.2.1 - Common libraries for various Eclipse projects.
- Java for Windows 1.5.0.09 - Run Java application on Sun Java(tm) runtime, packaged for Eclipse use. (Windows only)
- Java for Linux 1.5.0.09 - Run Java application on Sun Java(tm) runtime, packaged for Eclipse use. (Linux only)
Tools for general Java development:
- Eclipse Java Development Tools 3.2.1 - Edit, compile, run, debug, test, refactor, document and deploy Java applications.
Some essential utilities:
- AnyEdit Tools 1.5.6.2 - Useful right-click menus in editors: "Open file under cursor", "Open type under cursor", et cetera.
- Eclipse Utils Plugins 1.0.0.1 - Save the cursor position of editors when closing and re-opening a file. Access common team actions with explorer buttons.
- Color Editor 1.2.4 - Edit with syntax highlighting over 100+ file formats.
IDE for Python development:
- PyDev 1.2.4 - Edit, run, debug and refactor Python and Jython applications.
Version Control tools (note that CVS support is included in the Eclipse Platform):
- Subclipse 1.1.8 - Access and manage Subversion repositories within Eclipse.
<<lessThis distribution includes the following plugins:
Core components:
- Eclipse Platform 3.2.1 - Shared platform services from Eclipse.
- Eclipse Tools 3.2.1 - Common libraries for various Eclipse projects.
- Java for Windows 1.5.0.09 - Run Java application on Sun Java(tm) runtime, packaged for Eclipse use. (Windows only)
- Java for Linux 1.5.0.09 - Run Java application on Sun Java(tm) runtime, packaged for Eclipse use. (Linux only)
Tools for general Java development:
- Eclipse Java Development Tools 3.2.1 - Edit, compile, run, debug, test, refactor, document and deploy Java applications.
Some essential utilities:
- AnyEdit Tools 1.5.6.2 - Useful right-click menus in editors: "Open file under cursor", "Open type under cursor", et cetera.
- Eclipse Utils Plugins 1.0.0.1 - Save the cursor position of editors when closing and re-opening a file. Access common team actions with explorer buttons.
- Color Editor 1.2.4 - Edit with syntax highlighting over 100+ file formats.
IDE for Python development:
- PyDev 1.2.4 - Edit, run, debug and refactor Python and Jython applications.
Version Control tools (note that CVS support is included in the Eclipse Platform):
- Subclipse 1.1.8 - Access and manage Subversion repositories within Eclipse.
Download (117MB)
Added: 2007-06-19 License: Eclipse Public License Price:
860 downloads
TXTCOD 4.7.1b
TXTCOD is an encoding module using the SAC system. more>>
TXTCOD is an encoding module using the SAC system.
SYNOPSIS
use TXTCOD;
TXTCOD::codage($source,
$destination,
< $file.cod >,
< $algorithm.alc >,
< $param >);
$param = TXTCOD::decodage($source,
$destination,
$file.cod,
< $algorithm.alc >);
$file.cod = TXTCOD::createcod;
TXTCOD 4.7 encodes files with the SAC system, 2.4 version..
The SAC system consists in several algorithms : a default algorithm who can be remplaced by user-written algorithms. Every algorithm uses a .cod file generated by the module and who contains a list of random numbers used by the module in order to ensure a maximal protection.
B>
This version of the SAC system can encode any type of file (binary files, text) and recognizes automatically their type.
In the first part you will see the modules how-to and in the second part how to program an algorithm.
FIRST PART : TXTCOD Module
These functions will be accessible after you have typed B>
1) Encoding
You call the encoding function by typing :
TXTCOD::codage($source,
$destination,
< $file.cod >,
< $algorithm.alc >,
< $param >);
This function doesnt return any value.
$source is the file you want to encode.
$destination is the file where TXTCOD will send the result of the encoding.
These two parameters are B>.
$file.cod is the .cod file who is indispensable for the encoding and the decoding. If you dont specify this parameter, will search a "[year].cod" file, for example "2003.cod". A .cod file MUST be changed every year at least in order to assure an optimal protection.
$algorithm.alc is the used algorithm. If you dont put anything, TXTCOD will use the default algorithm.
$param is an user-defined parameter who wont be crypted.
2) Decoding
You call the decoding function by typing :
$param = TXTCOD::decodage($source,
$destination,
$file.cod,
);
$source in the file you want to decode.
$destination is the result of the decoding
$file.cod et $algorithm.alc -> see the encoding function description.
The returned value is the parameter you optionnally defined while the encoding and which isnt crypted.
3) .cod files creation
To create a .cod file type :
$file.cod = TXTCOD::createcod;
The returned value is the files name ("[year].cod")
<<lessSYNOPSIS
use TXTCOD;
TXTCOD::codage($source,
$destination,
< $file.cod >,
< $algorithm.alc >,
< $param >);
$param = TXTCOD::decodage($source,
$destination,
$file.cod,
< $algorithm.alc >);
$file.cod = TXTCOD::createcod;
TXTCOD 4.7 encodes files with the SAC system, 2.4 version..
The SAC system consists in several algorithms : a default algorithm who can be remplaced by user-written algorithms. Every algorithm uses a .cod file generated by the module and who contains a list of random numbers used by the module in order to ensure a maximal protection.
B>
This version of the SAC system can encode any type of file (binary files, text) and recognizes automatically their type.
In the first part you will see the modules how-to and in the second part how to program an algorithm.
FIRST PART : TXTCOD Module
These functions will be accessible after you have typed B>
1) Encoding
You call the encoding function by typing :
TXTCOD::codage($source,
$destination,
< $file.cod >,
< $algorithm.alc >,
< $param >);
This function doesnt return any value.
$source is the file you want to encode.
$destination is the file where TXTCOD will send the result of the encoding.
These two parameters are B>.
$file.cod is the .cod file who is indispensable for the encoding and the decoding. If you dont specify this parameter, will search a "[year].cod" file, for example "2003.cod". A .cod file MUST be changed every year at least in order to assure an optimal protection.
$algorithm.alc is the used algorithm. If you dont put anything, TXTCOD will use the default algorithm.
$param is an user-defined parameter who wont be crypted.
2) Decoding
You call the decoding function by typing :
$param = TXTCOD::decodage($source,
$destination,
$file.cod,
);
$source in the file you want to decode.
$destination is the result of the decoding
$file.cod et $algorithm.alc -> see the encoding function description.
The returned value is the parameter you optionnally defined while the encoding and which isnt crypted.
3) .cod files creation
To create a .cod file type :
$file.cod = TXTCOD::createcod;
The returned value is the files name ("[year].cod")
Download (0.006MB)
Added: 2007-07-26 License: Perl Artistic License Price:
820 downloads
khtml2png 1.0.3 / 2.6.7a
khtml2png is a command line program to create screenshots of webpages. more>>
khtml2png is a command line program to create screenshots of webpages. The project uses libkhtml (the library that is used in the KDE webbrowser Konqueror).
In khtml2png 2.0.5 to 2.5.0 "convert" from the ImageMagick graphic conversion toolkit is used to create the output files in various image file formats. 2.6.0 and future development will use the built-in conversion of the Qt library.
There are two branches of khtml2png: An old 1.0.x branch containing the original code from Simon MacMullen (the former developer and maintainer of khtml2png) and a new 2.x done by the new maintainer Hauke Goos-Habermann. The branches have different features whereas 1.0.x is outdated and will not run correctly on newer KDE versions (newer than 3.2 if I remember correctly). The 2.6.0 release was improved very much by Florent Bruneau.
Main features:
- Scale output image
- Works with KDE 3.2 and newer
- Make screeshots longer than your screen height
- Make screeshots wider than your screen width
- Use a HTML element in the page to figure out the screenshot size
- Different output file formats
<<lessIn khtml2png 2.0.5 to 2.5.0 "convert" from the ImageMagick graphic conversion toolkit is used to create the output files in various image file formats. 2.6.0 and future development will use the built-in conversion of the Qt library.
There are two branches of khtml2png: An old 1.0.x branch containing the original code from Simon MacMullen (the former developer and maintainer of khtml2png) and a new 2.x done by the new maintainer Hauke Goos-Habermann. The branches have different features whereas 1.0.x is outdated and will not run correctly on newer KDE versions (newer than 3.2 if I remember correctly). The 2.6.0 release was improved very much by Florent Bruneau.
Main features:
- Scale output image
- Works with KDE 3.2 and newer
- Make screeshots longer than your screen height
- Make screeshots wider than your screen width
- Use a HTML element in the page to figure out the screenshot size
- Different output file formats
Download (MB)
Added: 2007-07-19 License: GPL (GNU General Public License) Price:
829 downloads
Flagpoll 0.8.3
Flagpoll is a tool for developers to use meta-data files for storing information on what is needed to compile their software. more>>
Flagpoll project is a tool for developers to use meta-data files for storing information on what is needed to compile their software.
Think of it as the rpm of software development. It provides developers with total control over which packages, versions, architectures, et cetera that they want to use meta-data from.
Instead of specifying other packages cflags and ldflag manually, you can call `flagpoll mylib --cflags --ldflags` and it will retrieve the flags for its package as well as its dependencies.
For example:
gcc -o foo foo.c `flagpoll --libs --cflags gtk+-2.0`
Is a lot cleaner than:
gcc -o foo foo.c -L/usr/lib64 -lgtk-x11-2.0 -lgdk-x11-2.0 -lgdk_pixbuf-2.0 -lm
-lgobject-2.0 -lglib-2.0 -lgmodule-2.0 -ldl -lpango-1.0
-lpangocairo-1.0 -lcairo -latk-1.0
-I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include
-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include
-I/usr/include/pango-1.0 -I/usr/include/cairo
-I/usr/include/atk-1.0
All of the dependencies needed for compilation are kept in each packages meta-data file. The dependencies are resolved and the results are all necessary libs and includes needed for gtk+.
Enhancements:
- Support for Mac OS X frameworks was added.
- A serious path ordering bug and a command line usage bug were fixed.
<<lessThink of it as the rpm of software development. It provides developers with total control over which packages, versions, architectures, et cetera that they want to use meta-data from.
Instead of specifying other packages cflags and ldflag manually, you can call `flagpoll mylib --cflags --ldflags` and it will retrieve the flags for its package as well as its dependencies.
For example:
gcc -o foo foo.c `flagpoll --libs --cflags gtk+-2.0`
Is a lot cleaner than:
gcc -o foo foo.c -L/usr/lib64 -lgtk-x11-2.0 -lgdk-x11-2.0 -lgdk_pixbuf-2.0 -lm
-lgobject-2.0 -lglib-2.0 -lgmodule-2.0 -ldl -lpango-1.0
-lpangocairo-1.0 -lcairo -latk-1.0
-I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include
-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include
-I/usr/include/pango-1.0 -I/usr/include/cairo
-I/usr/include/atk-1.0
All of the dependencies needed for compilation are kept in each packages meta-data file. The dependencies are resolved and the results are all necessary libs and includes needed for gtk+.
Enhancements:
- Support for Mac OS X frameworks was added.
- A serious path ordering bug and a command line usage bug were fixed.
Download (0.024MB)
Added: 2007-07-02 License: GPL (GNU General Public License) Price:
849 downloads
Winstone 0.9.9
Winstone is a servlet container that was written out of a desire to provide servlet functionality. more>>
Winstone is a servlet container that was written out of a desire to provide servlet functionality. Winstone works without the bloat that full J2EE compliance introduces.
It is not intended to be a completely fully functional J2EE style servlet container (by this I mean supporting extraneous APIs unrelated to Servlets, such as JNDI, JavaMail, EJBs, etc) - this is left to Tomcat, Jetty, Resin, JRun, Weblogic et al.
Sometimes you want just a simple servlet container - without all the other junk - that just goes. This is where Winstone is best suited.
The short version (because the long version is way too politically incorrect) is as follows:
Winstone is the name of a rather large Jamaican man a friend of mine met one night, while he was out clubbing in the Roppongi area of Tokyo. He (my friend) was a little liquored up at the time, and when Winstone suggested they head to "this really cool club" he knew, he didnt think anything was wrong. It wasnt until Winstone led him down a dark stairwell and dropped his trousers that my friend clued in and ran like hell.
It was too good a story to let die, so I named this project Winstone so that said friend will continue to be reminded of it.
Main features:
- Supply fast, reliable servlet container functionality for a single webapp per server
- Keep the size of the core distribution jar as low as possible (currently 160KB)
- Keep configuration files to an absolute minimum, using command line options to optionally override sensible compiled in defaults.
- Eventually compile with GCJ to make a 3-4Meg windows exe for local development/deployment of servlets. This has not happened yet, because of some GCJ class loading problems.
- Optionally support JSP compilation using Apaches Jasper.
Usage:
If you want to build from source code, you will need to download and install Apache Maven. The following instructions assume you have already installed Maven and have the maven shell script in your path (to get Maven, see http://maven.apache.org/).
To build Winstone, unpack the tree:
tar zxf winstone-src-0.8.tar.gz
Then build it:
cd winstone
maven clean jar
The winstone.jar file will be in the target directory after the build is complete.
To run it:
java -jar target/winstone-0.8.jar --webroot= (+ other options)
- OR -
java -jar target/winstone-0.8.jar --warfile= (+ other options)
- OR -
java -jar target/winstone-0.8.jar --webappsDir= (+ other options)
- OR -
java -jar target/winstone-0.8.jar --hostsDir= (+ other options)
<<lessIt is not intended to be a completely fully functional J2EE style servlet container (by this I mean supporting extraneous APIs unrelated to Servlets, such as JNDI, JavaMail, EJBs, etc) - this is left to Tomcat, Jetty, Resin, JRun, Weblogic et al.
Sometimes you want just a simple servlet container - without all the other junk - that just goes. This is where Winstone is best suited.
The short version (because the long version is way too politically incorrect) is as follows:
Winstone is the name of a rather large Jamaican man a friend of mine met one night, while he was out clubbing in the Roppongi area of Tokyo. He (my friend) was a little liquored up at the time, and when Winstone suggested they head to "this really cool club" he knew, he didnt think anything was wrong. It wasnt until Winstone led him down a dark stairwell and dropped his trousers that my friend clued in and ran like hell.
It was too good a story to let die, so I named this project Winstone so that said friend will continue to be reminded of it.
Main features:
- Supply fast, reliable servlet container functionality for a single webapp per server
- Keep the size of the core distribution jar as low as possible (currently 160KB)
- Keep configuration files to an absolute minimum, using command line options to optionally override sensible compiled in defaults.
- Eventually compile with GCJ to make a 3-4Meg windows exe for local development/deployment of servlets. This has not happened yet, because of some GCJ class loading problems.
- Optionally support JSP compilation using Apaches Jasper.
Usage:
If you want to build from source code, you will need to download and install Apache Maven. The following instructions assume you have already installed Maven and have the maven shell script in your path (to get Maven, see http://maven.apache.org/).
To build Winstone, unpack the tree:
tar zxf winstone-src-0.8.tar.gz
Then build it:
cd winstone
maven clean jar
The winstone.jar file will be in the target directory after the build is complete.
To run it:
java -jar target/winstone-0.8.jar --webroot= (+ other options)
- OR -
java -jar target/winstone-0.8.jar --warfile= (+ other options)
- OR -
java -jar target/winstone-0.8.jar --webappsDir= (+ other options)
- OR -
java -jar target/winstone-0.8.jar --hostsDir= (+ other options)
Download (0.33MB)
Added: 2007-07-11 License: LGPL (GNU Lesser General Public License) Price:
838 downloads
Bio::SAGE::DataProcessing 1.20
Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data. more>>
Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data.
SYNOPSIS
use Bio::SAGE::DataProcessing;
$sage = Bio::SAGE::DataProcessing->new();
# open sequence and quality files
open( READS, "library.fasta" );
open( QUAL, "library.qual.fasta" );
# collect ditags and statistics from reads
$sage->process_library( *READS, *QUAL );
# close files
close( READS );
close( QUAL );
# output tags in descending order of expression
my %tags = %{$sage->get_tagcounts()};
open( TAGS, ">library.tags" );
map { print TAGS join( "t", $_, $tags{$_} ) . "n" } sort { $tags{$b} $tags{$a} } keys %tags;
close( TAGS );
# tag AAACCGGGTT matches two different genes
# so 15th base pair may help resolve this
$sage->print_extra_base_calculation( $sage->get_extract_base_calculation( "AAACCGGGTT" ) );
This module provides several tools for processing and analyzing serial analysis of gene expression (SAGE) libraries.
Serial analysis of gene expression (SAGE) is a molecular technique for generating a near-global snapshot of a cell population’s transcriptome. Briefly, the technique extracts short sequences at defined positions of transcribed mRNA. These short sequences are then paired to form ditags. The ditags are concatamerized to form long sequences that are then cloned. The cloned DNA is then sequenced. Bioinformatic techniques are then employed to determine the original short tag sequences, and to derive their progenitor mRNA. The number of times a particular tag is observed can be used to quantitate the amount of a particular transcript. The original technique was described by Velculescu et al. (1995) and utilized an ~14bp sequence tag. A modified protocol was introduced by Saha et al. (2002) that produced ~21bp tags.
PURPOSE
This module facilitates the processing of SAGE data. Specifically:
1. extracting ditags from raw sequence reads.
2. extracting tags from ditags, with the option to
exclude tags if the Phred scores (described by
Ewing and Green, 1998a and Ewing et al., 1998b)
do not meet a minimum cutoff value.
3. calculating descriptive values
4. statistical analysis to determine, where possible,
additional nucleotides to extend the length of the
SAGE tag (thus facilitating more accurate tag to
gene mapping).
Both regular SAGE (14mer tag) and LongSAGE (21mer tag) are supported by this module. Future protocols should be configurable with this module.
<<lessSYNOPSIS
use Bio::SAGE::DataProcessing;
$sage = Bio::SAGE::DataProcessing->new();
# open sequence and quality files
open( READS, "library.fasta" );
open( QUAL, "library.qual.fasta" );
# collect ditags and statistics from reads
$sage->process_library( *READS, *QUAL );
# close files
close( READS );
close( QUAL );
# output tags in descending order of expression
my %tags = %{$sage->get_tagcounts()};
open( TAGS, ">library.tags" );
map { print TAGS join( "t", $_, $tags{$_} ) . "n" } sort { $tags{$b} $tags{$a} } keys %tags;
close( TAGS );
# tag AAACCGGGTT matches two different genes
# so 15th base pair may help resolve this
$sage->print_extra_base_calculation( $sage->get_extract_base_calculation( "AAACCGGGTT" ) );
This module provides several tools for processing and analyzing serial analysis of gene expression (SAGE) libraries.
Serial analysis of gene expression (SAGE) is a molecular technique for generating a near-global snapshot of a cell population’s transcriptome. Briefly, the technique extracts short sequences at defined positions of transcribed mRNA. These short sequences are then paired to form ditags. The ditags are concatamerized to form long sequences that are then cloned. The cloned DNA is then sequenced. Bioinformatic techniques are then employed to determine the original short tag sequences, and to derive their progenitor mRNA. The number of times a particular tag is observed can be used to quantitate the amount of a particular transcript. The original technique was described by Velculescu et al. (1995) and utilized an ~14bp sequence tag. A modified protocol was introduced by Saha et al. (2002) that produced ~21bp tags.
PURPOSE
This module facilitates the processing of SAGE data. Specifically:
1. extracting ditags from raw sequence reads.
2. extracting tags from ditags, with the option to
exclude tags if the Phred scores (described by
Ewing and Green, 1998a and Ewing et al., 1998b)
do not meet a minimum cutoff value.
3. calculating descriptive values
4. statistical analysis to determine, where possible,
additional nucleotides to extend the length of the
SAGE tag (thus facilitating more accurate tag to
gene mapping).
Both regular SAGE (14mer tag) and LongSAGE (21mer tag) are supported by this module. Future protocols should be configurable with this module.
Download (0.019MB)
Added: 2007-07-14 License: Perl Artistic License Price:
834 downloads
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