dna transcription
Express Scribe Transcription for mac 4.22
Digital Transcription software for typists with foot pedal control more>> Free digital transcription software for typists - Express Scribe is professional audio playback control software designed to assist the transcription of audio recordings. It is installed on the typists computer and can be controlled using the keyboard (with hot keys) and/or foot pedals. This computer transcriber application features variable speed playback, foot pedal operation, file management and more. This program is free.
Features:
~ Ability to play compressed wav or dct files.
~ Variable speed (constant pitch) playback.
~ Can use computer rudder pedals (or some other specialist transcription pedals) to control playback.
~ Ability to Dock portable recorders to load recordings.
~ Uses systemwide HotKeys so you can control playback when using other software (eg. Microsoft Word).
~ Automatically receives and loads files by internet (FTP), email or over a local computer network.
~ Automatically sends typing to the person who dictated the work.
~ Express Scribe is free.<<less
Express Scribe Transcription for Linux 4.22
Digital Transcription software for typists with foot pedal control more>> Free digital transcription software for typists - Express Scribe is professional audio playback control software designed to assist the transcription of audio recordings. It is installed on the typists computer and can be controlled using the keyboard (with hot keys) and/or foot pedals. This computer transcriber application features variable speed playback, foot pedal operation, file management and more. This program is free.
Features:
~ Ability to play compressed wav or dct files.
~ Variable speed (constant pitch) playback.
~ Can use computer rudder pedals (or some other specialist transcription pedals) to control playback.
~ Ability to Dock portable recorders to load recordings.
~ Uses systemwide HotKeys so you can control playback when using other software (eg. Microsoft Word).
~ Automatically receives and loads files by internet (FTP), email or over a local computer network.
~ Automatically sends typing to the person who dictated the work.
~ Express Scribe is free.<<less
DNA BASER 2.60
Visit us for updated info: http://www.DNABaser.com DNA Baser Assembler is easy to use software for simple and batch DNA sequence assembly, DNA sequence analysis, contig editing, metadata integration and mutation detection. It also offers a powerful chromatogram viewer/editor. The truly user-friendly interface makes DNA Baser the best choice for DNA contig assembly. For more details, see the DNA BASER Features page. File formats supported are abi, scf and seq (or FASTA). Features: end clip, export,auto trim... more>>
DNA BASER - Visit us for updated info: http://www.DNABaser.com
DNA Baser Assembler is easy to use software for simple and batch DNA sequence assembly, DNA sequence analysis, contig editing, metadata integration and mutation detection. It also offers a powerful chromatogram viewer/editor. The truly user-friendly interface makes DNA Baser the best choice for DNA contig assembly. For more details, see the DNA BASER Features page.
Why is DNA Baser Assembler special?
Any software company pretends that their product is the best. But lets see for real if DNA Baser can offer you a better proposition. As you will see below we concentrate on adding automatic and batch functions to our product in order to decrease the time. Additional to this, DNA Baser is available at a "kill your competition" price.
Forget about manually trimming the low quality ends of your sequences. DNA Baser Assembler will do it for you!
Do you think you need weeks to assemble hundreds of contigs? What about doing this in minutes? DNA Baser is the only software that can automatically detect and assemble sequences belonging to the same contig based on their filename.
Do you think that is necessary to spend more than 20 minutes to correct discrepancies and mismatches in every contig? Wrong! DNA Baser is the first software which can make correct suggestions in at least 98% of cases.
Have you ever wondered how others laboratories afford to have sequence assembly software in EVERY computer? Simple! They dont spend thousands of dollars for each license. They use DNA Baser Assembler. DNA Baser is affordable, has no annual maintenance fees, technical support is included in price and you have instant access to your key, right after purchase.
You dont have to fill in and submit forms in order to get a trial version. If you want to try it, you can download and install it in less than one minute. No personal data or registration process is required. The trial version is fully functional.
DNA BASER Assembler offers a smart navigation system that takes you to the location of each sequence ambiguity / mutation with a single click.
Enhancements:
Version 2.60
New: Metadata and batch metadata integration.
New: Button to open Windows Explorer in contigs folder, after sequence assembly.
New: Remove vectors from single chromatograms.
New: SEQUENCE ANALISYS - mark al bases with a confidence level (QV) below a specified threshold, in red.
New: Batch convert from chromatogram to Fasta with vector removal and automatic metadata integration.
New: Resizable chromatograms.
Full support for low quality sample ends editing.
100% compatible with Mac via Parallels/Bootcamp/VMWare.
Improved handling of corrupted/invalid ABI/SCF files.
Improved contig editor.
Improved file association.
Improved Assemble to reference.
Improved log window.
Improved file handling: Before starting the contig, check if all files in the JobList are valid. Invalid samples are automatically removed from Job List so the assembly process can continue without human intervention. Build a list of invalid files and report it.
Improved user interface: new toolbar, improved embedded help, interactive help, workflow...
Improved sample viewer: Mark as trusted/un-trusted can now be used also in Sample viewer window
New: Show error message while trying to open empty/invalid FASTA files
Improved: Correctly handle multiple contigs resulted when assembling to a reference.
Improved: menu Save as Fasta/Seq/Scf was replaced with Save all as... and Save selected as.... Now the user can choose where to save the file.
Version 2.10
Batch assembly. Thousand of contigs can be assembled at once.
System Requirements:CPU: 333MHz, 64MB RAM, Video 1024x768, 2MB HDD free space<<less
Convert::Transcribe 0.02
Convert::Transcribe is a Perl extension for transcribing natural languages. more>>
SYNOPSIS
use Convert::Transcribe;
$t = new Convert::Transcribe();
$t->fromfile(filename);
# or
$t = new Convert::Transcribe();
$t->fromstring("transcription def. containing newlines");
# or
$t = new Convert::Transcribe(filename);
# or
$t = new Convert::Transcribe("transcription def. containing newlines");
$t->transcribe("text");
$t->generated_code(); # for debugging
DNA Counter 1.0.4
www.dnabaser.com This tool will show the proportions between nucleotides in a DNA sequence. You dont need to install it or unpack it. Just download the program and double click to run it. Other software: DNA Baser is an affordable alternative for assembly of DNA sequences and generation of contigs. File formats supported are abi, scf and seq (or FASTA). Chromatograms of the assembled sequences are displayed in a synchronized format with the generated contig. more>>
DNA Counter - www.dnabaser.com
This tool will show the proportions between nucleotides in a DNA sequence.
You dont need to install it or unpack it. Just download the program and double click to run it.
Other software by HeracleSoftware:
DNA Baser is an affordable alternative for assembly of DNA sequences and generation of contigs. File formats supported are abi, scf and seq (or FASTA). Chromatograms of the assembled sequences are displayed in a synchronized format with the generated contig. Ambiguous bases in the contig are highlighted and corrections are suggested by DNABaser based on Quality Values of the trace files. Minimum input from the user required. Editing of ambiguous bases, including insertion and deletion, is possible. The settings of the assembly engine can be adjusted by the user. The user can personalize the appearance of chromatograms, nucleotides, background. The Quality Values of the trace files are displayed above chromatograms, so that the user can easily decide on the corrections in the final contig. Original chromatogram files are automatically trimmed based on Quality Values. The contig is automatically saved in FASTA format, in the same directory with the original trace files. By using a built-up database of primer and vector sequences, that can be edited/upgraded by the user, DNABaser can be set to automatically trim the vector sequence out of the final contig.
The affordable price is another important feature of DNABaser, at only 490 USD per single license; significant discounts are offered for institutions that order several licenses of DNABaser (see our pricing policy on our web pages).
Enhancements:
Version 1.0.3
better speed
System Requirements:CPU: 100MHz, 16MB RAM, Video 800x600, 0.3MB HDD free space<<less
Deep Network Analyser 1.5 GA
Deep Network Analyser is an open, flexible, and extensible deep network analyzer server. more>>
Deep Network Analyser project is designed to be used for Internet security, network management, intrustion detection, protocol and network analysis, information gathering, and network monitoring applications.
Main features:
- Extensible Java based network sensor (processing layers 2-7)
Configurable processing and output:
- Packet flows like Ethereal
- IP Flows like CISCO netflow
- Stateful Sessions (client/server flow pairs)
- Application protocol element output
- Configurable and extensible application protocol element parsing.
- Application protocol parsing toolkit APIs allows for new protocol parser to be easily developed and extended
- Targeting based full session capture facility, like a realtime targeted TCPDump.
- Flexible targeting from IPAddr, Port tuple to Application sensitive targeting.
- Configurable and extensible output forwarding (file, DB, Streams, JMS, RMI, etc.)
- Extensible realtime collection portable to many OS/Packet processing environments
Easily adaptable to packet processing environments:
- Specialized linux drivers mechanismon
- Network Appliances
- Network Switches / Routers
- Highly mutithreaded for increased performance over multi processor environments
Enhancements:
- Adoption of OpenAdaptor(tm) as the Output Adapter mechanism.
- Support for local-only administration.
- A new targeted packet capture parser, new run scripts, and a new install mechanism.
- Many bugfixes.
Genomorama: Genome Visualization 1.5
Genomorama: Genome Visualization is a multi-scale, multi-genome, multi-platform visualization and analysis program. more>>
Genomorama is written in portable, highly optimized C++ and comes in three "flavors" that allow it to run natively on (most) modern operating systems: OS X (using Carbon), Microsoft Windows (using MFC), and Linux (using Motif). Executables and source code are freely provided for all flavors.
Main features:
- High performance has not been sacrificed on the altar of portability
- OpenGL graphics take advantage of the video-game optimized graphics cards available in most desktop and laptop computers.
- C++ allows transparent and complete utilization of system resources (like memory).
- Native windowing toolkits (Carbon, MFC and Motif) for every operating system facilitate responsiveness and ease of use.
- A stand-alone, self-contained executable frees Genomorama from dependence on third party applications.
- Source code for all platforms is freely available.
- An attractive, full featured user interface
- Genomorama presents a clean, uncluttered user interface.
- Multi-scale rendering displays relevant details while maintaining readability.
- Use a keyboard or a mouse to efficiently zoom, pan and explore genomes of arbitrary size.
- Attractive WYSIWYG Postscript and GIF output formats yield publication quality images.
- Novel features to aid genome analysis
- In addition to the standard searching options (like query by sequence and gene name), Genomorama offers "forward and reverse" DNA hybridization based searches.
- Provide a pair of PCR primers, and Genomorama will output the amplicons.
- Provide a hybridization probe and Genomorama will find binding sites.
- Provide a pair of Padlock probes and Genomorama will identify binding locations
- Provide a set of PCR primer criteria (length, melting temperature, base composition, etc.) and Genomorama will find PCR primers.
- Genomorama can display and search an arbitrary number of genomes (limited only by computer memory).
- Harness the power of the NCBI toolkit to directly access and search the NCBI Entrez database.
- Compute melting profile, in addition to traditional base composition plots (i.e. %G+C, %A+T, etc).
Enhancements:
- This release fixes the following bugs: parsing gbk files that contain single base annotations on the complement strand;
- missed exact matches at 3 end of target sequence;
- fragile parsing of annotation range;
- downloading of very large Genbank records (i.e. human chromosomes);
- and omitted intergenic space following single base annotations (i.e. SNPs).
- Custom color records are now saved to and read from GBK files.
- An OS X Intel-specific executable has been added.
- The information dialog box has been made resizable.
Express Scribe For Linux 4.14
Express Scribe is professional audio playback control software for Linux designed to assist with the transcription of audio recordings. Install on the typists computer and can be controlled using the more>>
Free digital transcription software for typists on Linux - Express Scribe is professional audio playback control software designed to assist the transcription of audio recordings. It is installed on the typists computer and can be controlled using the keyboard (with hot keys) and/or foot pedals. This computer transcriber application features variable speed playback, foot pedal operation, file management and more. This program is free.
Features:
~ Ability to play compressed wav or dct files.
~ Variable speed (constant pitch) playback.
~ Can use computer rudder pedals (or some other specialist transcription pedals) to control playback.
~ Ability to Dock portable recorders to load recordings.
~ Uses systemwide HotKeys so you can control playback when using other software (eg. Microsoft Word).
~ Automatically receives and loads files by internet (FTP), email or over a local computer network.
~ Automatically sends typing to the person who dictated the work.
~ Express Scribe is free.
Requirements: Sound Card, speakers or headset
<<less
It is installed on the typists computer and can be controlled using a transcription foot pedal ... The full features list of Express Scribe transcription playback software follows but a quickBio::Restriction::Enzyme 1.4
Bio::Restriction::Enzyme is a single restriction endonuclease (cuts DNA at specific locations). more>>
SYNOPSIS
# set up a single restriction enzyme. This contains lots of
# information about the enzyme that is generally parsed from a
# rebase file and can then be read back
use Bio::Restriction::Enzyme;
# define a new enzyme with the cut sequence
my $re=new Bio::Restriction::Enzyme
(-enzyme=>EcoRI, -seq=>G^AATTC);
# once the sequence has been defined a bunch of stuff is calculated
# for you:
#### PRECALCULATED
# find where the enzyme cuts after ...
my $ca=$re->cut;
# ... and where it cuts on the opposite strand
my $oca = $re->complementary_cut;
# get the cut sequence string back.
# Note that site will return the sequence with a caret
my $with_caret=$re->site; #returns G^AATTC;
# but it is also a Bio::PrimarySeq object ....
my $without_caret=$re->seq; # returns GAATTC;
# ... and so does string
$without_caret=$re->string; #returns GAATTC;
# what is the reverse complement of the cut site
my $rc=$re->revcom; # returns GAATTC;
# now the recognition length. There are two types:
# recognition_length() is the length of the sequence
# cutter() estimate of cut frequency
my $recog_length = $re->recognition_length; # returns 6
# also returns 6 in this case but would return
# 4 for GANNTC and 5 for RGATCY (BstX2I)!
$recog_length=$re->cutter;
# is the sequence a palindrome - the same forwards and backwards
my $pal= $re->palindromic; # this is a boolean
# is the sequence blunt (i.e. no overhang - the forward and reverse
# cuts are the same)
print "bluntn" if $re->overhang eq blunt;
# Overhang can have three values: "5", "3", "blunt", and undef
# Direction is very important if you use Klenow!
my $oh=$re->overhang;
# what is the overhang sequence
my $ohseq=$re->overhang_seq; # will return AATT;
# is the sequence ambiguous - does it contain non-GATC bases?
my $ambig=$re->is_ambiguous; # this is boolean
print "Stuff about the enzymenCuts after: $can",
"Complementary cut: $ocanSite:nt$with_caret orn",
"t$without_caretn";
print "Reverse of the sequence: $rcnRecognition length: $recog_lengthn",
"Is it palindromic? $paln";
print "The overhang is $oh with sequence $ohseqn",
"And is it ambiguous? $ambignn";
### THINGS YOU CAN SET, and get from rich REBASE file
# get or set the isoschizomers (enzymes that recognize the same
# site)
$re->isoschizomers(PvuII, SmaI); # not really true :)
print "Isoschizomers are ", join " ", $re->isoschizomers, "n";
# get or set the methylation sites
$re->methylation_sites(2); # not really true :)
print "Methylated at ", join " ", keys %{$re->methylation_sites},"n";
#Get or set the source microbe
$re->microbe(E. coli);
print "It came from ", $re->microbe, "n";
# get or set the person who isolated it
$re->source("Rob"); # not really true :)
print $re->source, " sent it to usn";
# get or set whether it is commercially available and the company
# that it can be bought at
$re->vendors(NEB); # my favorite
print "Is it commercially available :";
print $re->vendors ? "Yes" : "No";
print " and it can be got from ", join " ",
$re->vendors, "n";
# get or set a reference for this
$re->reference(Edwards et al. J. Bacteriology);
print "It was not published in ", $re->reference, "n";
# get or set the enzyme name
$re->name(BamHI);
print "The name of EcoRI is not really ", $re->name, "n";
This module defines a single restriction endonuclease. You can use it to make custom restriction enzymes, and it is used by Bio::Restriction::IO to define enzymes in the New England Biolabs REBASE collection.
Use Bio::Restriction::Analysis to figure out which enzymes are available and where they cut your sequence.
Deep Network Analyzer 1.5 GA
Deep Network Analyzer is an flexible, open and extensible deep network analyzer. more>>
DNA is designed to be used for Internet Security, Intrusion detection, Network Management, Protocol and Network Analysis, Information Gathering, Network Monitoring applications.
DNA runs as a distributed application under a Java Virtual Machine (JVM) environment and is portable across many OS environments, including: Network appliances, Switches and Routers.
Main features:
- Deep packet and session processing (layers 2-7)
- Configurable processing and output:
- Layer 4 Packet flows
- Layer 4-7 Stateful Sessions flows (client/server flow pairs)
- Layer 7 Packet and Session Application protocol Parsing (HTTP, DNS, P2P, VoIP, etc)
- Application protocol parsing toolkit enables easy devlopment of new new protocol parsers.
- Support for both symmetric and asymmetric routing links.
- Targeting based full session capture facility, like a real time targeted TCPDump.
- Flexible targeting from IP address, port tuple to application sensitive targeting.
- Configurable and extensible output adaptor utilizing OpenAdaptor able to send output to a varity of resources including: Flat file, Oracle, MySQL, MSSQL, Sybase, Sockets, JMS, RMI, WebService.
- Extensible real time collection engine portable across many OS/Packet processing environment :
- Specialized linux drivers mechanisms
- Network Appliances
- Network Switches / Routers
- Highly paralleliszed for increased performance over multi processor environment
- System metadata dictionary externalizes processing type definition
Enhancements:
- Adoption of OpenAdaptor(tm) as the Output Adapter mechanism.
- Support for local-only administration.
- A new targeted packet capture parser, new run scripts, and a new install mechanism.
- Many bugfixes.
Kana no quiz 1.7
Kana no quiz is a little tool to memorize japanese kana (hiragana & katakana). more>>
The method is quite simple: kana randomly appear and you have to find their transcription in rōmaji (Hepburn). There are several possibilities, but only one anwser is right!
Thanks to this method, you memorize the kana to its transcription, and thus know how to pronouce it!
It has been translated into several languages, and many quiz options are configurable. Kana images have been initially modelled in SVG and are placed under the Free Art License.
Through its option panel, Kana no quiz allows you to tune up
the quiz precisely, like choosing which group of kana you want
to train yourself upon.
First, hiragana and katakana are separated, both are then di-vided into big sets of kana according to their type ("Basic", "Modified", "Combined"; and a special "Additional" set for katakana only) which are thus composed of various portions containing 5/6 kana, following the traditional alphabet order (i.e.: ``ka ki ku ke ko").
According to your need and level, you may select one or more portions of the same or different sets, whole sets, all the kana... Once you feel comfortable (you can check it with the results displayed at the end of each quiz), you may also increase the number of possible answers in the random list, or even choose to answer directly through the text entry. Difficulty can be adapted to your skill: this is progressive learning.
From the complete beginner who has to start easily and learn step by step, to the wizard who just wants to confirm his/her absolute master of the kana, everyone should get satisfated with Kana no quiz!
RepeatFinder 1.0.0
RepeatFinder is a console-based bioinformatics tool that searches for repeating stretches of DNA. more>>
It allows mismatches, but enforces a one to one mapping between sections of DNA and a repeat motif, meaning that a section of DNA cannot be associated with more than one match.
RepeatFinder, after a couple of years of private lab use, is now available for public consumption!
RepeatFinder is a tool for finding repeating segments of DNA called motifs and then parsing them so that no repeating segments overlap - it is an exclusive matching algorithm where any part of the original DNA string is associated with one and only one match.
RepeatFinder has been written to compile and run on Linux and Windows. The source code has been designed to have a minimum of requirements so if you can compile a C program, then hopefully RepeatFinder will work for you even if your OS isnt one of the above. Let me know if you succesfully compile RepeatFinder on another platform.
Further details about the algorithm and how to use the command line tools will be added to this site in due time. In the mean time the first release, 1.0.0, is available for download here. Only source, x86 and x64 linux binaries are currently available. Windows binaries coming soon!
Data::Type 0.01.04
Data::Type is a Perl module with versatile data and value types. more>>
SYNOPSIS
use Data::Type qw(:all);
use Error qw(:try);
try
{
verify $email , EMAIL;
verify $homepage , URI(http);
verify $cc , CREDITCARD( MASTERCARD, VISA );
verify $answer_a , YESNO;
verify $gender , GENDER;
verify one , ENUM( qw(one two three) );
verify [qw(two six)], SET( qw(one two three four five six) ) );
verify $server_ip4 , IP(v4);
verify $server_ip6 , IP(v6);
verify A35231AH1 , CINS;
verify 14565935 , ISSN;
verify DE , LANGCODE;
verify German , LANGNAME;
verify 012345678905, UPC();
verify 5276440065421319, CREDITCARD( MASTERCARD ) );
verify ATGCAAAT , BIO::DNA;
verify AUGGGAAAU , BIO::RNA;
verify 01001001110110101, BINARY;
verify 0F 0C 0A, HEX;
verify 0 , DEFINED;
verify 234 , NUM( 20 );
verify 1 , BOOL( true );
verify 100 , INT;
verify 1.1 , REAL;
my $foo = bless( 123, SomeThing );
verify $foo , REF;
verify $foo , REF( qw(SomeThing Else) );
verify [ bar ] , REF( ARRAY );
verify x 20 , VARCHAR( 20 );
verify 2001-01-01 , DATE( MYSQL );
verify 16 Nov 94 22:28:20 PST , DATE( DATEPARSE );
verify 9999-12-31 23:59:59, DATETIME;
verify 1970-01-01 00:00:00, TIMESTAMP;
verify -838:59:59 , TIME;
verify 2155 , YEAR;
verify 69 , YEAR(2);
verify 0 x 20 , TINYTEXT;
verify 0 x 20 , MEDIUMTEXT;
verify 0 x 20 , LONGTEXT;
verify 0 x 20 , TEXT;
verify 80 , PORT;
verify www.cpan.org, DOMAIN;
}
catch Type::Exception with
{
my $e = shift;
printf "Expected %s %s at %s line %sn",
$e->value,
$e->type->info,
$e->was_file,
$e->was_line;
foreach my $entry ( testplan( $e->type ) )
{
printf "texpecting it %s %s ", $entry->[1] ? is : is NOT, $entry->[0]->info();
}
};
# believe it or not, this really works
foreach ( EMAIL, WORD, CREDITCARD( MASTERCARD, VISA ), BIO::DNA, HEX )
{
print $_->info;
print $_->usage;
print $_->export; # does it have other names
print $_->param; # what are my choice i.e. [yes,no]
print $_->isa( IType::Business ); # is it a Business related type ?
print $_->VERSION; # first apperance in Data::Type release
}
# tied interface (alias typ)
try
{
typ ENUM( qw(DNA RNA) ), ( my $a, my $b );
print "a is typed" if istyp( $a );
$a = DNA; # $alias only accepts DNA or RNA
$a = RNA;
$a = xNA; # throws exception
untyp( $alias );
}
catch Type::Exception ::with
{
printf "Expected %s %s at %s line %sn",
$e->value,
$e->type->info,
$e->was_file,
$e->was_line;
};
dverify( $email, EMAIL ) or die $!;
my $g = Data::Type::Guard->new(
allow => [ Human, Others ], # blessed objects of that type
tests =>
{
email => EMAIL( 1 ), # mxcheck ON ! see Email::Valid
firstname => WORD,
social_id => [ NUM, VARCHAR( 10 ) ],
contacts => sub { my %args = @_; exists $args{lucy} },
}
);
$g->inspect( $h );
# compact version
overify { email => EMAIL( 1 ), firstname => WORD }, $object_a, $object_b;
print toc();
print catalog();
This module supports versatile data and value types. Out of the ordinary it supports parameterised types (like databases have i.e. VARCHAR(80) ). When you try to feed a typed variable against some odd data, this module explains what he would have expected.
ESTScan 3.0.2
ESTScan is a program that can detect coding regions in DNA sequences, even if they are of low quality. more>>
ESTScan is not a gene prediction program , nor is it an open reading frame detector. In fact, its strength lies in the fact that it does not require an open reading frame to detect a coding region. As a result, the program may miss a few translated amino acids at either the N or the C terminus, but will detect coding regions with high selectivity and sensitivity.
Method
ESTScan takes advantages of the bias in hexanucleotide usage found in coding regions relative to non-coding regions. This bias is formalized as an inhomogeneous 3-periodic fifth-order Hidden Markov Model (HMM). Additionally, the HMM of ESTScan has been extended to allows insertions and deletions when these improve the coding region statistics.
Enhancements:
- A bug has been found and fixed in the BTLib package.
- The bug prevented the extract_mRNA script from the estscan package from functioning properly when parsing RefSeq sequences.
- The prepare_data script has also been fixed to properly report the percent of masked nucleotides.
- All users preparing score matrices for ESTScan are strongly encouraged to update.
- Updating is less important for people who only scan sequences with already existing matrices.
FASTA to multi-FASTA converter 1.3.1
www.DNABaser.com This tool will look for all DNA FASTA files in the specified folder and will merge their content in a single file. The output file is automatically saved on the HDD. Other software: DNA Baser is an affordable alternative for assembly of DNA sequences and generation of contigs. File formats supported are abi, scf and seq (or FASTA). Chromatograms of the assembled sequences are displayed in a synchronized format with the generated contig. more>>
FASTA to multi-FASTA converter - www.DNABaser.com
This tool will look for all DNA FASTA files in the specified folder and will merge the content in a single file. The output file is automatically saved on the HDD in the same folder as the input files.
Other software by HeracleSoftware:
DNA Baser is an affordable alternative for assembly of DNA sequences and generation of contigs. File formats supported are abi, scf and seq (or FASTA). Chromatograms of the assembled sequences are displayed in a synchronized format with the generated contig. Ambiguous bases in the contig are highlighted and corrections are suggested by DNABaser based on Quality Values of the trace files. Minimum input from the user required. Editing of ambiguous bases, including insertion and deletion, is possible. The settings of the assembly engine can be adjusted by the user. The user can personalize the appearance of chromatograms, nucleotides, background. The Quality Values of the trace files are displayed above chromatograms, so that the user can easily decide on the corrections in the final contig. Original chromatogram files are automatically trimmed based on Quality Values. The contig is automatically saved in FASTA format, in the same directory with the original trace files. By using a built-up database of primer and vector sequences, that can be edited/upgraded by the user, DNABaser can be set to automatically trim the vector sequence out of the final contig.
The affordable price is another important feature of DNABaser, at only 490 USD per single license; significant discounts are offered for institutions that order several licenses of DNABaser (see our pricing policy on our web pages).
Enhancements:
Version 1.3
better speed
System Requirements:CPU: 100MHz, 16MB RAM, Video 800x600, 0.3MB HDD free space<<less
