Free blast 1.4 software for linux

mpiBLAST is an MPI based parallel implementation of NCBI BLAST. The project consists of a pair of programs that replace formatdb and blastall with versions that execute BLAST jobs in parallel on a cluster of computers with MPI installed. There are two primary advantages to using mpiBLAST versus traditional BLAST.

First, mpiBLAST splits the database across each node in the cluster. Because each nodes segment of the database is smaller it can usually reside in the buffer-cache, yielding a significant speedup due to the elimination of disk I/O. Second, it allows BLAST users to take advantage of efficient, low-cost Beowulf clusters because interprocessor communication demands are low.

mpiBLAST achieves super-linear speedup in situations where the database is too large to fit into RAM, and near linear speedup in other situations. It does not require a dedicated cluster.

Prasi is a Protocol for Remote Authentication and Shared Information.
Prasi is a single-sign-on system for your Perl or PHP scripts, similar to MS Passport. All your enabled services can save and share user profile data, and need not be one the same physical server. Available in 7 languages.
Prasi was originally written as an in-house tool to power our internal-use web applications. Due to one of the tools now being publically released (Wefis) it was decided to make Prasi an open-source project, despite its similarity to other existing open-source projects.
Prasi can be used on two levels. Firstly, it enables all CGI (Perl or PHP) scripts residing on any server to perform user management without the hassle of user management. One perl procedure call, and the browsing user is identified or challenged. The exact behaviour is easily customisable.
On the second level, Prasi is also able to keep track of user data (for example, profiles) and seamlessly share that profile information with other Prasi-enabled scripts. Using Prasi in this way gives scripts the power of mySQL and other types of databases without needing to manage the data themselves. Its quite nearly magic.
For the end user, one login, one password - all Prasi-enabled scripts instantly know who the user is and customise content accordingly.
Enhancements:
- This release adds minor bugfixes and increased compatibility with "cgi-bin"-type systems.

Domino Blast project is a physics-based driving/demolition game with a childrens toys theme.

Domino Blast is a hybrid driving and destruction game with a childrens toys theme. Its environments consist of buildings constructed from domino tiles and a player-controllable toy car. The objective of the game is to wreak as much havoc as possible, within a time limit.

Its game-play is simplistic yet satisfying; similar to the satisfaction gained from watching a tumbling Jenga tower, except the objective is to tumble the tower, rather than slowly deconstruct it. As the game progresses, levels become more dense and the buildings that inhabit them become larger and more complex.

Pyblosxom is a weblog engine that uses standard text files located on your filesystem as a database of weblog entries. The concept is simple, managing content is as easy as editing a text file with your favourite text editor.
PyBlosxom uses directory tree to represent the category hierarchy. All entries in a PyBlosxom blog are text files where the first line is the title of the blog entry and the rest is the body of the entry.
PyBlosxom isnt easy to use and it wont scale well if you have a million entries.
PyBlosxom runs as a CGI script. It also runs as a WSGI application and it probably runs fine under mod_python, though this is less well-tested.
PyBlosxom supports flavours to change the look and feel of your blog. PyBlosxom supports plugins to modify the existing default behavior.
Enhancements:
- Fixed a problem where running PyBlosxom under Paste wont pick up the ``config.py`` file. Be sure to add a ``configpydir`` property to your ``blog.ini`` file which points to the directory your ``config.py`` file is in.
- Fixed a problem where running PyBlosxom in Python 2.5 wont pick up the ``config.py`` file.
- Merged Ryans optimization to Walk (removes an os.listdir call).
- Updated documentation.

RPilot project is an interpreter for the IEEE-standard language PILOT.
RPilot is an interpreter for the IEEE-standard programming language PILOT written in portable C.
PILOT is a language that was designed in the 1960s to support computer-aided instruction and is very simple to learn.
RPilot comes with an introduction to the language and several examples.
Enhancements:
- Fix usage of `isblank(), a GNU extension (Thanks to Patrick Eaton)
- Add some #defines to rpilot.h to replace a few hard-coded constants
- RPilot is over 4 years old. Wow.

msmtp project is an SMTP client.
In the default mode, msmtp transmits a mail to an SMTP server (for example at a free mail provider) which does the delivery.
To use this program with your mail user agent (MUA), create a configuration file with your mail account(s) and tell your MUA to call msmtp instead of /usr/sbin/sendmail.
msmtpqueue is a pair of very simple shell scripts that allows you to "queue" mails and send them all at a later time (useful for dialup connections: write your mails offline and send them when you are online).
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
msmtp is released under the GPL with the additional exemption that compiling, linking, and/or using OpenSSL is allowed.
Main features:
- Authentication methods PLAIN, LOGIN and CRAM-MD5 (and GSSAPI, DIGEST-MD5 and NTLM when compiled with GNU SASL support)
- TLS encrypted connections (including server certificate verification and the possibility to send a client certificate)
- DSN (Delivery Status Notification) support
- RMQS (Remote Message Queue Starting) support (ETRN keyword)
- PIPELINING support for increased transmission speed
- IPv6 support
- support for multiple accounts
- sendmail compatible interface (command line options and exit codes)

Jaffm stands for "Just A Fucking File Manager" and is supposed to be a lightweight file-manager for Unix.
No needless features, only usefulness. Its direct aim is to brainwash those who use terminals as file managers.
Enhancements:
- The program is much faster.
- All known bugs which caused crashes were fixed.
- A status bar was introduced.
- Configuration was made easier to understand.
- Massive code cleanup was done.
- The license was changed from the GPL to a BSD-style license.

Perlbot is an IRC bot written in Perl. It depends on Net::IRC and its goals are simplicity and modularity.

This is a modular bot. All functionality is provided by Plugins which use a standard, simple API. The two most common levels of functionality are encompassed by the "Core" and "Basic" sets of plugins. Click here for more information on Perlbot plugins.

A growing suite of integrated web services is also a feature that sets Perlbot apart. With integrated browsing and searching of channel logs via the web and XML web-published bot statistics, Perlbot makes lots of information readily available.