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Biogenesis 0.4

Biogenesis 0.4


Biogenesis project is a unicellular organism evolution simulator. more>>
Biogenesis project is a unicellular organism evolution simulator.
Biogenesis simulates in a visual fashion the processes involved in the evolution of unicellular organisms in nature.
It tries to be a didactic approximation to the ideas of mutation or evolution, and can be enjoyed also as an entertainment.
Its intended to serve as a support to show students some basic biological facts. The idea of Biogenesis is taken from Primordial Life, but its an independent project.
Main features:
- The application should be multiplatform.
- There should exist translations in many languages. At the moment, there are only Catalan, English and Spanish translations.
- The representation should be abstract and simplified, but still scientifically accurate.
- It should be actively maintained.
- A good documentation should be enclosed with the application.
- It should be amusing.
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Download (0.092MB)
Added: 2006-10-31 License: GPL (GNU General Public License) Price:
1089 downloads
Blood Toll Beta

Blood Toll Beta


Blood Toll is the first ever online video game where everyone has a price on their head. more>>
Have you ever been told "stop wasting your time playing video games?" Well now it is time to turn those hours of wasted time into skills that can earn you money.
Blood Toll project is the first ever online video game where everyone has a price on their head, and the more you frag the more money you make. Play for free and win cool prizes with our training mode until you are comfortable enough to play the real thing.
Main features:
- Completely free to download and play
- One click installation
- Fast paced game play
- Compete against real people for real money
- Compete for cool prizes
- Extremely fast to download
- Constantly updating with new levels, items and weapons
- Software checks to insure all players have a sufficient internet connection to prevent lag
- Built with exceptional cheat protection and security
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Download (MB)
Added: 2007-01-22 License: Freeware Price:
1008 downloads
Atomic Tanks 2.5

Atomic Tanks 2.5


Atomic Tanks is a multi-platform scorched earth clone for 2-10 players. more>>
Atomic Tanks project is a multi-platform scorched earth clone for 2-10 players.

Annihilate the other tanks to earn money, then spend it on bigger and better shields and weapons to wipe out the opposition.

Features a wide array of weapons, AI players, destructible landscape, weather, parachutes, teleports and a wide range of other features.

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Download (2.5MB)
Added: 2007-08-16 License: GPL (GNU General Public License) Price:
520 downloads
Dodgin Diamond 2 0.2.1

Dodgin Diamond 2 0.2.1


Dodgin Diamond 2 is a little shoot-em-up arcade game. more>>
Dodgin Diamond 2 project is a little shoot-em-up arcade game.
The game is for one or two players.
It aims to be an "old school" arcade game with low resolution graphics, top-down scrolling action, energy based gameplay, and different weapons with several levels of power.
Main features:
- Top-down arcade game.
- One or two players.
- Energy based gameplay (up to ten hits).
- Music and sound where available.
- Three different weapons with five levels of power.
- Companion bot.
- Shield cells.
- 2 stages (with final boss).
- Full joystick support (one or two joysticks).
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Download (0.28MB)
Added: 2006-12-07 License: GPL (GNU General Public License) Price:
1053 downloads
Tactical Operations: Crossfire 1.6

Tactical Operations: Crossfire 1.6


Tactical Operations: Crossfire is a tactical shooter based on Unreal Tournament 2004. more>>
Tactical Operations: Crossfire is a tactical shooter based on Unreal Tournament 2004.

Tactical Operations: Crossfire is a fast paced first person online shooter in which two teams, terrorists and special forces, duke it out in a wide variety of environments with various objectives to accomplish. From rescuing hostages kept in a small desert town in Saudi-Arabia to preventing the bombing of an oil refinery on the Caspian sea shore. There are no less than fourteen official maps to choose from!

Each map is played for a certain amount of time and the team having won the most rounds when the time runs out is declared the winner. A round can be won either by completing the objective set for that team, such as rescueing the hostages, or by simply eliminating all players on the opposite team.

A large number of weapons is avaialable for both teams, which can be purchased by each player at the start of the round. Out of the thirty weapons currently available, theres bound to be a weapon to suit your style of playing, be it either up close and personal with the Benelli Nova tactical shotgun or sneaky sniper work with the Dragunov SVD.

Tactical Operations: Crossfire continues where the popular Tactical Ops: Assault on Terror left off, with many classic weapons returning and remakes of some of the original maps. To play TO:C, you will need Unreal Tournament 2004 installed and patched to the latest version (3369). Tactical Ops: Crossfire can be played on Windows, Linux and Mac systems.

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Download (697.8MB)
Added: 2007-03-04 License: Freeware Price:
997 downloads
BioJava 1.30

BioJava 1.30


BioJava is an open source Java components for biological computation. more>>
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It include objects for manipulating sequences, file parsers, DAS client and server suport, access to BioSQL and Ensembl databases, and powerful analysis and statistical routines including a dynamic programming toolkit.
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Download (9.0MB)
Added: 2005-04-01 License: LGPL (GNU Lesser General Public License) Price:
1666 downloads
Biomolecule Toolkit 0.8.1

Biomolecule Toolkit 0.8.1


Biomolecule Toolkit project is an Open Source library for the structural modeling of biological macromolecules. more>>
Biomolecule Toolkit project is an Open Source library for the structural modeling of biological macromolecules. The toolkit provides a C++ interface for common tasks in computational structural biology, to facilitate the development of molecular modeling, design, and analysis tools.
Enhancements:
Documentation updates
- Addition of an extensive discussion of the leastsquares_superposition and RMSD-calculation methods, including a description of the mathematical theory behind their operation.
- Fully documented the rotation/translation methods
- Addition of a documented example program ("gyration_radius.cpp")
Bug fixes
- Fixed copy construction bug in PDBAtomDecorator that caused compilation errors in rare situations.
- Fixed a bug in PDBFileParser that caused a compilation error in the PDBSystem copy constructor.
- Fixed a const-conversion bug in GroupedElementIterator which prevented proper interoperation of const and non-const iterator types.
- Fixed a crash-producing bug in stream output for the TypeID class.
- Fixed a math error in RMSD and superposition methods that would corrupt molecule coordinates.
- Fixed a bug that caused all default-constructed PDBAtom objects to be treated as HETATMs.
Feature additions
- Added operator[] to AtomicStructure and PolymerStructure-derived classes.
- Added protected increment() and decrement() operators to TypeID class.
- PDBFileParser can now handle PDB files with ill-formed residue numbering (i.e. Files where residue numbers are repeated in successive chains).
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Download (0.44MB)
Added: 2007-07-16 License: GPL (GNU General Public License) Price:
830 downloads
GEneral NEural SImulation System 2.2.1

GEneral NEural SImulation System 2.2.1


GEneral NEural SImulation System is a neural network simulator. more>>
GENESIS (short for GEneral NEural SImulation System) is a general purpose simulation platform that was developed to support the simulation of neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, simulations of large networks, and systems-level models.

GENESIS has provided the basis for laboratory courses in neural simulation at Caltech, the Marine Biological Laboratory, the Crete, Trieste, Bangalore, and Obidos short courses in Computational Neuroscience, and at least 49 universities of which we are aware.

Most current GENESIS applications involve realistic simulations of biological neural systems. Although the software can also model more abstract networks, other simulators are more suitable for backpropagation and similar connectionist modeling.

Installation

1. Pick the place where you want to install the "genesis" directory tree. If you are making a system-wide installation as "root" user, /usr/local is a good choice. For a personal installation, without root privileges, you can use your home directory ("~"). Change to this directory and extract the genesis directory from the archive file genesis2.2.1-linux-bin.tar.gz. For example,

cd /usr/local
tar xvzf /mnt/cdrom/genesis2.2.1-linux-bin.tar.gz

or from wherever you have it (e.g.~/downloads/genesis2.2.1-linux-bin.tar.gz).

2. Change to the "genesis" directory and run the setup script that creates the ".simrc" GENESIS initialization file". Then copy .simrc to your home directory.

cd genesis
./binsetup
cp .simrc ~

3. Finallly, add the genesis directory to your search path, so that "genesis" can be found from any directory that you are in. If your login shell is bash, you can do this by editing the .bashrc file in your home directory to add the line

PATH=$PATH:/usr/local/genesis

at the end of the file. If you are using tcsh or csh as your command shell, add

set path=($path /usr/local/genesis)

to your .tcsh or .csh file.

At this point, you are ready to try running GENESIS. Change into the directory genesis/Scripts and try some of the tutorials suggested in the README file.
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Download (7.5MB)
Added: 2005-04-01 License: BSD License Price:
1667 downloads
Noble Ape Simulation 0.686

Noble Ape Simulation 0.686


The Noble Ape Simulation creates a random environment and simulates the ape inhabitants cognitive processes. more>>
The Noble Ape Simulation has been developed (as the Nervana Simulation) since 1996 and is a biological simulation software. The aim of the simulation is to create a detailed biological environment and a cognitive simulation.
The Simulation is intended as a palette for open source cross-platform development. It provides a stable means of simulating large-scale environments and cognitive processes on Windows, Mac and Linux.
The Simulation includes a detailed scripting language for user-implemented movement and cognitive-process development.
Enhancements:
- This release fixes a bug in displaying only the seen Noble Apes, and has code simplification towards OpenGL implementation.
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Download (0.15MB)
Added: 2007-07-30 License: Freeware Price:
816 downloads
Tactical Rogue 0.1.1

Tactical Rogue 0.1.1


Tactical Rogue is a tactical roguelike game. more>>
Tactical Rogue game aims to take the best of two very interesting concepts and merge them together, namely, the variety and endlessness of rogue and the strategic elements of Tactics Ogre/Final Fantasy Tactics.

Basically this means well be autogenerating vast amounts of items, weapons and armors, autogenerating dungeon labyrinths and autogenerating monsters based on set profiles. Then, we will use these autogenerated worlds and enforce a strategical/tactical engine based upon many simply attributes such as speed, movement, agility, strength, dexterity, wisdom, intelligence, hp, mp, level, class and experience. The game will run semi-realtime, in the sense that time progresses until someones wait-time reaches zero allowing them to move/act which will then reset their wait-time to its maximum value based upon the characters traits and attributes.

The game will be developed under linux using sdl and c++, using .png for graphical storage of sprites and aminations and .ogg (vorbis) for storage of sound effects and music. All files, be it code, music or sprites will be licenced in a license compatible with the GPL, most likely under the GPL.

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Download (2.9MB)
Added: 2007-05-14 License: Freeware Price:
893 downloads
Blob Wars : Blob and Conquer 0.91

Blob Wars : Blob and Conquer 0.91


Blob Wars : Blob and Conquer is a 3rd person action shooter. more>>
Blob Wars : Blob and Conquer is a 3rd person action shooter. With the apparent defeat of Galdov and the reclaiming of the Fire, Space, Time and Reality Crystals, the Blobs battle was only just beginning.
Bob had rescued many Blobs and fought many battles, but now he had an ever bigger task ahead of him. The Blobs homeworld is still littered with the alien forces and Bob once again makes it his task to lead the counter attack.
But even without Galdov the aliens are still extremely well organised.
Main features:
- Explore and battle in full 3D environments
- Use and aquire mutliple weapons (uzis, shotguns, grenades)
- Fight familiar enemies - Assimilated Blobs, Eye Droids.
- Auto targetting enables you to maintain a lock on enemies whilst dodging around
- Blob allies - Fight alongside buddies such as Teeka the Scout
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Download (33MB)
Added: 2007-05-30 License: GPL (GNU General Public License) Price:
889 downloads
Bio::GMOD 0.28

Bio::GMOD 0.28


Bio::GMOD is a unified API for Model Organism Databases. more>>
Bio::GMOD is a unified API for Model Organism Databases.

SYNOPSIS

Check the installed version of a MOD
use Bio::GMOD::Util::CheckVersions.pm
my $mod = Bio::GMOD::Util::CheckVersions->new(-mod=>WormBase);
my $version = $mod->live_version;
Update a MOD installation
use Bio::GMOD::Update;
my $mod = Bio::GMOD::Update->new(-mod=>WormBase);
$gmod->update();
Fetch a list of genes from a MOD
use Bio::GMOD::Query;
my $mod = Bio::GMOD::Query->new(-mod=>WormBase);
my @genes = $mod->fetch(-class=>Gene,-name=>unc-26);

Bio::GMOD is a unified API for accessing various Model Organism Databases. It is a part of the Generic Model Organism Database project, as well as distributed on CPAN.

MODs are highly curated resources of biological data. Although they typically incorporate sequence data housed at community repositories such as NCBI, they place this information within a framework of biological fuction gelaned from the published literature of experiments in model organisms.

Given the great proliferation of MODs, cross-site data mining strategies have been difficult to implement. Such strategies typically require a familiarity with both the underlying data model and the historical vocabulary of the model system.

Furthermore, the quickly-evolving nature of these projects have made installing a MOD locally and keeping it up-to-date a delicate and time-consuming experience.

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Download (0.070MB)
Added: 2006-10-10 License: Perl Artistic License Price:
1137 downloads
Tactical Operations: Crossfire Server 1.6

Tactical Operations: Crossfire Server 1.6


Tactical Operations: Crossfire is a tactical shooter based on Unreal Tournament 2004. more>>
Tactical Operations: Crossfire is a tactical shooter based on Unreal Tournament 2004.

Tactical Operations: Crossfire is a fast paced first person online shooter in which two teams, terrorists and special forces, duke it out in a wide variety of environments with various objectives to accomplish. From rescuing hostages kept in a small desert town in Saudi-Arabia to preventing the bombing of an oil refinery on the Caspian sea shore. There are no less than fourteen official maps to choose from!

Each map is played for a certain amount of time and the team having won the most rounds when the time runs out is declared the winner. A round can be won either by completing the objective set for that team, such as rescueing the hostages, or by simply eliminating all players on the opposite team.

A large number of weapons is avaialable for both teams, which can be purchased by each player at the start of the round. Out of the thirty weapons currently available, theres bound to be a weapon to suit your style of playing, be it either up close and personal with the Benelli Nova tactical shotgun or sneaky sniper work with the Dragunov SVD.

Tactical Operations: Crossfire continues where the popular Tactical Ops: Assault on Terror left off, with many classic weapons returning and remakes of some of the original maps. To play TO:C, you will need Unreal Tournament 2004 installed and patched to the latest version (3369). Tactical Ops: Crossfire can be played on Windows, Linux and Mac systems.

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Download (311.6MB)
Added: 2007-03-04 License: Freeware Price:
974 downloads
Alien Swarm 1.32

Alien Swarm 1.32


Alien Swarm is a co-op mod for UT2004 where you play a team of marines fighting agains the swarm. more>>
Alien Swarm is an overhead view tactical shooter modification for Unreal Tournament 2004. Alien Swarm is set in a distant future, the players take the role of a Commander in the Interstellar Armed Forces.

They must guide their squad of marines through Swarm infested colonies, overrun bases and outposts, to achieve a variety of objectives. Featuring Assault Rifles, Heat Tracking Guns, Sentry Guns, Flamethrowers and more.

The top down, tactical shooter can be played by a maximum of 6 players in a co-op style. (You can play 8 in total, but then the game gets a bit crowded so we made it 6 by default.) Choose from eight marines, with different specialties - medical, technical, explosive or weapons specialists.

It features a single mission mode and a campaign. Fight off the Swarm to increase your skills and earn medals for extra skill points.

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Download (121.2MB)
Added: 2007-03-03 License: GPL (GNU General Public License) Price:
979 downloads
Kraptor Final 2004

Kraptor Final 2004


Kraptor is a classic shoot em up scroller game, where you must fight against tons of bad dudes. more>>
Kraptor is a classic shoot em up scroller game, where you must fight against tons of bad dudes.
The game offers high speed action, with massive destruction and lots of fun. Kraptor features a powerful engine for 2D shooter scroller games. Massive destruction, powerful weapons, all that you always wanted in this kind of games! It is also multi-platform (DOS, Win32, Linux and more!)
Main features:
- FULL SOURCE CODE AVAILABLE FREE (Under MIT license)
- Works on many platforms, including DOS, Windows and Linux!
- Supports all resolutions, like 320x200, 640x480, 1024x768, etc.; even those bizarre ones, like 160x120, 320x400, etc.
- Uses stereo positional sound (you hear the ships flying around you)
- Has a incredible particle system, that let all sorts of particle effects in the explosions, fire on the ground, the ships going down in flames,and the weapons can let a trail of smoke, beams, etc
- Has a dynamic fire, smoke and explosions system based on layers and on-fly rendering, that let show a massive destruction effect on the air and ground.
- Has a dynamic enviroment sub-engine to render rain, snow, etc.
- The ships explodes into pieces, and the builds on the ground blows up in a chain-explosion effect.
- Enemys of any size, and custom IAs and weapons.
- All kind of animated bad dudes, from tiny ones to big bad bosses.
- All the flying objects cast shadows over the background, with perspective correction.
- Support for animations and cinematic, with sound and subtitles.
- A on-fly translation system with UNICODE and UTF-8 support, that can translate on the fly all the GUIs to other language.
- Multiple weapons for player and enemies.
- Has original music sound-track.
- You can lower/raise the detail level, in low detail, the game runs good even on a 486 DX2!
- Original story, with cool movies.
- Realistic huge hi-res backgrounds levels.
- Original high quality stereo sounds and music
- Support for Spanish and English translation on-fly
- Black market shop to buy new weapons, upgrade ship, etc.
- GUI driven interface like the one used in Unre*l.
- You can Save / Load your game
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Download (10MB)
Added: 2005-08-11 License: GPL (GNU General Public License) Price:
1537 downloads
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