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Pybliographic 1.2.9
Pybliographer is a tool for managing bibliographic databases. more>>
Pybliographer is a tool for managing bibliographic databases. Pybliographic can be used for searching, editing, reformatting, etc.
In fact, its a simple framework that provides easy to use python classes and functions, and therefore can be extended to many uses (generating HTML pages according to bibliographic searches, etc).
In addition to the scripting environment, a graphical Gnome interface is available. It provides powerful editing capabilities, a nice hierarchical search mechanism, direct insertion of references into LyX and Kile, direct queries on Medline, and more.
It currently supports the following file formats: BibTeX, ISI, Medline, Ovid, Refer.
Pybliographer is licenced under the GNU GPL, and available with its source code for free.
<<lessIn fact, its a simple framework that provides easy to use python classes and functions, and therefore can be extended to many uses (generating HTML pages according to bibliographic searches, etc).
In addition to the scripting environment, a graphical Gnome interface is available. It provides powerful editing capabilities, a nice hierarchical search mechanism, direct insertion of references into LyX and Kile, direct queries on Medline, and more.
It currently supports the following file formats: BibTeX, ISI, Medline, Ovid, Refer.
Pybliographer is licenced under the GNU GPL, and available with its source code for free.
Download (0.85MB)
Added: 2006-07-13 License: GPL (GNU General Public License) Price:
1201 downloads
Bibliophile 3.0
Bibliophile is a collection of libraries for Web-based literature database development. more>>
Bibliophile project is a collection of libraries for Web-based literature database development that were created to align the development of bibliographic databases for the Web.
Bibliophile was founded by Mark Grimshaw (Wikindx), Matthias Steffens (RefBase) and Daniel Pozzi (PHPBibMan) in 2004. Our goal is to promote collaboration between developers and end-users of bibliographic databases.
We provide GPL PHP libraries to be used in any project for conversion, import and export of bibliographic exchange formats (EndNote, BibTeX etc.), formatting of raw bibliographic data and citations (APA, Chicago, IEEE etc.) and a range of other utilities.
One future target is to establish a technology to provide cross-site searches for references. BPCentral, the central server will hold a catalogue of installations and the kind of search interface they provide and some more information. A first preliminary version is already up and running.
We provide GPL PHP libraries to be used in any project for conversion, import and export of bibliographic exchange formats (EndNote, BibTeX etc.), formatting of raw bibliographic data and citations (APA, Chicago, IEEE etc.) and a range of other utilities. Packages include:
- OSBiB ~ bibliography/citation formatter comprising tools to format bibliographies and citations within a block of text and to create and edit styles. Styles bundled with the download include APA, MLA, Chicago, Turabian, Harvard, British Medical Journal and IEEE. The bibliography and citation formatting can be tested here.
- bibtexParse ~ parse a BibTeX .bib file into PHP arrays.
- charmyKnife ~ the Swiss Army Knife of character conversion.
- minimalRtf ~ provides minimal Rich Text Formatting for marking-up text.
- modsParse ~ parse a MODS file in PHP arrays.
<<lessBibliophile was founded by Mark Grimshaw (Wikindx), Matthias Steffens (RefBase) and Daniel Pozzi (PHPBibMan) in 2004. Our goal is to promote collaboration between developers and end-users of bibliographic databases.
We provide GPL PHP libraries to be used in any project for conversion, import and export of bibliographic exchange formats (EndNote, BibTeX etc.), formatting of raw bibliographic data and citations (APA, Chicago, IEEE etc.) and a range of other utilities.
One future target is to establish a technology to provide cross-site searches for references. BPCentral, the central server will hold a catalogue of installations and the kind of search interface they provide and some more information. A first preliminary version is already up and running.
We provide GPL PHP libraries to be used in any project for conversion, import and export of bibliographic exchange formats (EndNote, BibTeX etc.), formatting of raw bibliographic data and citations (APA, Chicago, IEEE etc.) and a range of other utilities. Packages include:
- OSBiB ~ bibliography/citation formatter comprising tools to format bibliographies and citations within a block of text and to create and edit styles. Styles bundled with the download include APA, MLA, Chicago, Turabian, Harvard, British Medical Journal and IEEE. The bibliography and citation formatting can be tested here.
- bibtexParse ~ parse a BibTeX .bib file into PHP arrays.
- charmyKnife ~ the Swiss Army Knife of character conversion.
- minimalRtf ~ provides minimal Rich Text Formatting for marking-up text.
- modsParse ~ parse a MODS file in PHP arrays.
Download (0.20MB)
Added: 2005-12-14 License: GPL (GNU General Public License) Price:
1412 downloads
Pybliographer 1.3.3
Pybliographer is a tool for managing bibliographic databases. more>>
Pybliographer is a tool for managing bibliographic databases. It can be used for searching, editing, reformatting, etc. In fact, its a simple framework that provides easy to use python classes and functions, and therefore can be extended to many uses (generating HTML pages according to bibliographic searches, etc).
In addition to the scripting environment, a graphical Gnome interface is available. It provides powerful editing capabilities, a nice hierarchical search mechanism, direct insertion of references into LyX and Kile, direct queries on Medline, and more.
Pybliographer currently supports the following file formats: BibTeX, ISI, Medline, Ovid, Refer. Pybliographer is licenced under the GNU GPL, and available with its source code for free. It is the resulting work of many people.
<<lessIn addition to the scripting environment, a graphical Gnome interface is available. It provides powerful editing capabilities, a nice hierarchical search mechanism, direct insertion of references into LyX and Kile, direct queries on Medline, and more.
Pybliographer currently supports the following file formats: BibTeX, ISI, Medline, Ovid, Refer. Pybliographer is licenced under the GNU GPL, and available with its source code for free. It is the resulting work of many people.
Download (0.80MB)
Added: 2006-09-25 License: GPL (GNU General Public License) Price:
1125 downloads
Bio::Biblio 1.4
Bio::Biblio is a Bibliographic Query Service module. more>>
Bio::Biblio is a Bibliographic Query Service module.
SYNOPSIS
use Bio::Biblio;
my $biblio = new Bio::Biblio;
print $biblio->find (perl)->get_count . "n";
my $collection = $biblio->find (brazma, authors);
while ( $collection->has_next ) {
print $collection->get_next;
}
#The new() method can get parameters, for example:
$biblio = Bio::Biblio
(-access => soap,
-location => http://industry.ebi.ac.uk/soap/openBQS,
-destroy_on_exit => 0);
# See below for some one-liners
This is a class whose instances can access bibliographic repositories. It allows to query a bibliographic database (such as MEDLINE) and then to retrieve resulting citations from it. The citations are returned in an XML format which is native to the repository but there are also supporting modules for converting them into Perl objects.
The detailed descriptions of all query and retrieval methods are in Bio::DB::BiblioI (an interface). All those methods should be called on instances of this (Bio::Biblio) module.
The module complies (with some simplifications) with the specification described in the OpenBQS project. Its home page is at http://industry.ebi.ac.uk/openBQS. There are also links to available servers providing access to the bibliographic repositories (namely to MEDLINE).
The module also gives an access to a set of controlled vocabularies and their values. It allows to introspect bibliographic repositories and to find what citation resource types (such as journal and book articles, patents or technical reports) are provided, and what attributes they have, eventually what attribute values are allowed.
Here are some one-liners:
perl -MBio::Biblio -e print new Bio::Biblio->get_by_id ("94033980")
perl -MBio::Biblio
-e print join ("n", @{ new Bio::Biblio->find ("brazma")->get_all_ids })
perl -MBio::Biblio
-e print new Bio::Biblio->find ("Java")->find ("perl")->get_count
<<lessSYNOPSIS
use Bio::Biblio;
my $biblio = new Bio::Biblio;
print $biblio->find (perl)->get_count . "n";
my $collection = $biblio->find (brazma, authors);
while ( $collection->has_next ) {
print $collection->get_next;
}
#The new() method can get parameters, for example:
$biblio = Bio::Biblio
(-access => soap,
-location => http://industry.ebi.ac.uk/soap/openBQS,
-destroy_on_exit => 0);
# See below for some one-liners
This is a class whose instances can access bibliographic repositories. It allows to query a bibliographic database (such as MEDLINE) and then to retrieve resulting citations from it. The citations are returned in an XML format which is native to the repository but there are also supporting modules for converting them into Perl objects.
The detailed descriptions of all query and retrieval methods are in Bio::DB::BiblioI (an interface). All those methods should be called on instances of this (Bio::Biblio) module.
The module complies (with some simplifications) with the specification described in the OpenBQS project. Its home page is at http://industry.ebi.ac.uk/openBQS. There are also links to available servers providing access to the bibliographic repositories (namely to MEDLINE).
The module also gives an access to a set of controlled vocabularies and their values. It allows to introspect bibliographic repositories and to find what citation resource types (such as journal and book articles, patents or technical reports) are provided, and what attributes they have, eventually what attribute values are allowed.
Here are some one-liners:
perl -MBio::Biblio -e print new Bio::Biblio->get_by_id ("94033980")
perl -MBio::Biblio
-e print join ("n", @{ new Bio::Biblio->find ("brazma")->get_all_ids })
perl -MBio::Biblio
-e print new Bio::Biblio->find ("Java")->find ("perl")->get_count
Download (4.7MB)
Added: 2007-06-11 License: Perl Artistic License Price:
866 downloads
biblio.PLS 1.5.2_102
biblio.PLS is a bioperl client for accessing and querying a bibliographic repository. more>>
biblio.PLS is a bioperl client for accessing and querying a bibliographic repository.
SYNOPSIS
Usage:
biblio.PLS [vh]
biblio.PLS [bcFgOpq] [-l < URL >]
biblio.PLS [abcdDeFknmOpqrs] [-l < URL >] -i < collection-ID >
biblio.PLS [abcdDeFknmOpqrs] [-l < URL >] - -find < keywords >
[-attrs ]...
biblio.PLS [Vq] [-l < URL >]
biblio.PLS [FOq] [-f < filename >]
A client showing how to use Bio::Biblio module, a module for accessing and querying a bibliographic repository. It also shows how to use modules Bio::Biblio::IO::medlinexml Bio::Biblio::IO::medline2ref which converts XML MEDLINE citations into a simple hash table and into full Perl objects.
It has many options in order to cover as many methods as possible. Because of that, it can be also used as a fully functional command-line client for querying repository and retrieving citations from it.
<<lessSYNOPSIS
Usage:
biblio.PLS [vh]
biblio.PLS [bcFgOpq] [-l < URL >]
biblio.PLS [abcdDeFknmOpqrs] [-l < URL >] -i < collection-ID >
biblio.PLS [abcdDeFknmOpqrs] [-l < URL >] - -find < keywords >
[-attrs ]...
biblio.PLS [Vq] [-l < URL >]
biblio.PLS [FOq] [-f < filename >]
A client showing how to use Bio::Biblio module, a module for accessing and querying a bibliographic repository. It also shows how to use modules Bio::Biblio::IO::medlinexml Bio::Biblio::IO::medline2ref which converts XML MEDLINE citations into a simple hash table and into full Perl objects.
It has many options in order to cover as many methods as possible. Because of that, it can be also used as a fully functional command-line client for querying repository and retrieving citations from it.
Download (5.6MB)
Added: 2007-06-16 License: Perl Artistic License Price:
860 downloads
bibteXML 0.2.1
bibteXML provides an XML equivalent of BibTeX. more>>
bibteXML provides an XML equivalent of BibTeX.
bibteXML is a bibliography DTD for XML that expresses the content model of BibTeX, the bibliographic system for use with LaTeX.
It provides conversion tools for tagging your bibliographic data in XML, or export it to HTML or native BibTeX syntax, saving typing time.
BibTeXML is shipped with tools to translate native TeX-syntax BibTeX bibliographies to XML and translate this into any markup scheme. Hence one is able to profit from both the existing BibTeX system and bibliographies as well as the transformation and presentation facilities offered by XML.
Our goal is to maintain a strict BibTeX schema and develop (and collect!) conversion tools that will help you tag your bibliographic data in XML and save typing time, or export it to XML based bibliographic formats such as MODS, as well as HTML, DocBook, LaTeX or native BibTeX syntax.
Enhancements:
- Dublin Core Metadata support (xml & html)
- Endnote Export format output style
<<lessbibteXML is a bibliography DTD for XML that expresses the content model of BibTeX, the bibliographic system for use with LaTeX.
It provides conversion tools for tagging your bibliographic data in XML, or export it to HTML or native BibTeX syntax, saving typing time.
BibTeXML is shipped with tools to translate native TeX-syntax BibTeX bibliographies to XML and translate this into any markup scheme. Hence one is able to profit from both the existing BibTeX system and bibliographies as well as the transformation and presentation facilities offered by XML.
Our goal is to maintain a strict BibTeX schema and develop (and collect!) conversion tools that will help you tag your bibliographic data in XML and save typing time, or export it to XML based bibliographic formats such as MODS, as well as HTML, DocBook, LaTeX or native BibTeX syntax.
Enhancements:
- Dublin Core Metadata support (xml & html)
- Endnote Export format output style
Download (0.053MB)
Added: 2007-08-22 License: GPL (GNU General Public License) Price:
796 downloads
PhiloLogic 3.1
PhiloLogic is a full-text database engine developed for humanities computing text analysis by the ARTFL Project. more>>
PhiloLogic is the primary full-text search, retrieval and analysis tool developed by the ARTFL Project and the Digital Library Development Center (DLDC) at the University of Chicago. PhiloLogic is a Free Software implementation of PhiloLogic for large TEI-Lite document collections.
The wide array of XML data specifications and the recent deployment of basic XML processing tools provides an important opportunity for the collaborative development of higher-level, interoperable tools for Humanities Computing applications. The sophistication and power of the TEI-XML encoding specification supports the development of extremely rich textual data representations that encourage, if not require, development of sets of tools to exploit features of encoded text to perform particular tasks.
It may be the case that one general tool will never fit all possible uses for encoded documents, but that a set of more specialized, interoperable tools for end-user applications will provide a mechanism for cost-effective deployment of end-user applications.
As the ARTFL Projects contribution to the collaborative development of these tools, PhiloLogic has been enhanced to support a wide variety of TEI-Lite (XML and SGML) encoded documents optionally using the Unicode character specification. We feel that Humanities Computing applications are particularly well suited to open source development by a community with wide ranging technical abilities that is not well supported by the commercial sector. Our goal is to provide as many features as possible while not requiring significant administrative or development work to use effectively.
Originally implemented to support large databases of French literature, PhiloLogic has been extended to support a wide variety of textual and hypermedia databases in collaboration with numerous academic institutions and, more recently, commercial organizations.
PhiloLogic is a modular system, in which a textbase is treated as a set of coordinated or related databases, typically including an object (units of text such as a letter, scene, document, etc) database, a word forms database, a word concordance index mapped to textual objects, and an object manager mapping text objects to byte offsets in data files. Each of these databases is stored and managed using its own subsystem.
Main features:
- light, fast, robust, extensively used and tested
- few dependencies, basic installation almost wholly self-contained
- out of the box operation with many configuration options
- TEI-Lite XML/SGML with Unicode support
- MySQL back-end for bibliographic searching
- optional XML-aware or non-XML bibliographic loaders
- interoperability across certain systems
- fault tolerant
- open source
Enhancements:
- CGIs have been modified to support multilingual user interfaces.
- 300 system messages have been translated into French and modularized into language-specific arrays.
- Word padding in KWIC reports has been fixed.
<<lessThe wide array of XML data specifications and the recent deployment of basic XML processing tools provides an important opportunity for the collaborative development of higher-level, interoperable tools for Humanities Computing applications. The sophistication and power of the TEI-XML encoding specification supports the development of extremely rich textual data representations that encourage, if not require, development of sets of tools to exploit features of encoded text to perform particular tasks.
It may be the case that one general tool will never fit all possible uses for encoded documents, but that a set of more specialized, interoperable tools for end-user applications will provide a mechanism for cost-effective deployment of end-user applications.
As the ARTFL Projects contribution to the collaborative development of these tools, PhiloLogic has been enhanced to support a wide variety of TEI-Lite (XML and SGML) encoded documents optionally using the Unicode character specification. We feel that Humanities Computing applications are particularly well suited to open source development by a community with wide ranging technical abilities that is not well supported by the commercial sector. Our goal is to provide as many features as possible while not requiring significant administrative or development work to use effectively.
Originally implemented to support large databases of French literature, PhiloLogic has been extended to support a wide variety of textual and hypermedia databases in collaboration with numerous academic institutions and, more recently, commercial organizations.
PhiloLogic is a modular system, in which a textbase is treated as a set of coordinated or related databases, typically including an object (units of text such as a letter, scene, document, etc) database, a word forms database, a word concordance index mapped to textual objects, and an object manager mapping text objects to byte offsets in data files. Each of these databases is stored and managed using its own subsystem.
Main features:
- light, fast, robust, extensively used and tested
- few dependencies, basic installation almost wholly self-contained
- out of the box operation with many configuration options
- TEI-Lite XML/SGML with Unicode support
- MySQL back-end for bibliographic searching
- optional XML-aware or non-XML bibliographic loaders
- interoperability across certain systems
- fault tolerant
- open source
Enhancements:
- CGIs have been modified to support multilingual user interfaces.
- 300 system messages have been translated into French and modularized into language-specific arrays.
- Word padding in KWIC reports has been fixed.
Download (0.58MB)
Added: 2006-07-14 License: AGPL (Affero General Public License) Price:
1197 downloads
MyPHPBib 0.3
MyPHPBib provides a Web-based bibliographic database manager. more>>
MyPHPBib provides a Web-based bibliographic database manager.
MyPHPBib is a Web application for managing bibliographic references.
It can import references in several formats, such as EndNote and RIS.
It can also import references directly from PubMed.
<<lessMyPHPBib is a Web application for managing bibliographic references.
It can import references in several formats, such as EndNote and RIS.
It can also import references directly from PubMed.
Download (0.45MB)
Added: 2007-02-13 License: GPL (GNU General Public License) Price:
985 downloads
Bib2x 0.9.0
Bib2x allows the conversion of BibTeX bibliographies to any ASCII/UTF8-based file format (like XHTML, XML, RTF) using templates. more>>
Bib2x allows the conversion of BibTeX bibliographies to any ASCII/UTF8-based file format (like XHTML, XML, RTF, ...) using templates.
Bib2x project allows filtering on a subset of bibliographic entries read from BibTeX databases.
Installation:
The simplest way to compile this package is:
1. `cd to the directory containing the packages source code and type `./configure to configure the package for your system. If youre using `csh on an old version of System V, you might need to type `sh ./configure instead to prevent `csh from trying to execute `configure itself.
Running `configure takes a while. While running, it prints some messages telling which features it is checking for.
2. Type `make to compile the package.
3. Type `make install to install the programs and any data files and documentation.
4. You can remove the program binaries and object files from the source code directory by typing `make clean.
<<lessBib2x project allows filtering on a subset of bibliographic entries read from BibTeX databases.
Installation:
The simplest way to compile this package is:
1. `cd to the directory containing the packages source code and type `./configure to configure the package for your system. If youre using `csh on an old version of System V, you might need to type `sh ./configure instead to prevent `csh from trying to execute `configure itself.
Running `configure takes a while. While running, it prints some messages telling which features it is checking for.
2. Type `make to compile the package.
3. Type `make install to install the programs and any data files and documentation.
4. You can remove the program binaries and object files from the source code directory by typing `make clean.
Download (0.12MB)
Added: 2006-06-09 License: GPL (GNU General Public License) Price:
1233 downloads
Citation 1.7
Citation project is a web based tool for bibliographic conversions. more>>
Citation project is a web based tool for bibliographic conversions.
Citation is a bibliographical conversion program designed to transform data between several different formats including GTEC, Refer, and Bibtex.
This program saves the researcher time by keeping unnecessary formatting from taking up their time. Currently, Citation is written in Java.
The use of Java moves much of the processing of the program to the users machine.
After downloading the Citation applet, the user is free to log off the network, but can still continue using the Citation applet.
Main features:
- Citation is available in both applet format and command line driven application.
- The Citation applet has the ability to convert between single or multiple entries.
- The Citation application is specifically designed for batch processing of files.
- Easy to use interface.
- Citation 1.7 supports format conversion from: INSPEC, ENGI, GTEC, PSYCH, Refer, and Bibtex to: Refer, Bibtex, HFS (Handbook for Scholars), Chicago Manual of Style, MLA (Modern Language Association), APA (American Psychology Association), and Galileo formats: ABI and Periodicals.
- Citation 1.7 has added new input manual format where user can add his or her own inputs in the input boxes rather than cut and pasting. This also supports format conversion mentioned previously.
<<lessCitation is a bibliographical conversion program designed to transform data between several different formats including GTEC, Refer, and Bibtex.
This program saves the researcher time by keeping unnecessary formatting from taking up their time. Currently, Citation is written in Java.
The use of Java moves much of the processing of the program to the users machine.
After downloading the Citation applet, the user is free to log off the network, but can still continue using the Citation applet.
Main features:
- Citation is available in both applet format and command line driven application.
- The Citation applet has the ability to convert between single or multiple entries.
- The Citation application is specifically designed for batch processing of files.
- Easy to use interface.
- Citation 1.7 supports format conversion from: INSPEC, ENGI, GTEC, PSYCH, Refer, and Bibtex to: Refer, Bibtex, HFS (Handbook for Scholars), Chicago Manual of Style, MLA (Modern Language Association), APA (American Psychology Association), and Galileo formats: ABI and Periodicals.
- Citation 1.7 has added new input manual format where user can add his or her own inputs in the input boxes rather than cut and pasting. This also supports format conversion mentioned previously.
Download (MB)
Added: 2006-10-25 License: GPL (GNU General Public License) Price:
1099 downloads
cb2Bib 1.3.1
The cb2Bib is a tool for rapidly extracting unformatted biblographic references from email alerts. more>>
cb2Bib 1.3.1 is a useful tool used for rapidly extracting unformatted biblographic references from email alerts.
The cb2Bib reads the clipboard text contents and process it against a set of predefined patterns. If this automatic detection is successful, cb2Bib formats the clipboard data according to the structured BibTeX reference standard.
Otherwise, if no predefined format pattern is found or if detection proves to be difficult, manual data extraction is greatly simplified by cb2Bib. In most cases, such manual data extraction will provide with a new, personalized pattern to be included within the predefined pattern set for future automatic extractions.
Once the bibliographic reference is correctly extracted, it is added to a specified BibTeX database file. Optionally, article PDF files, if available, are renamed to its citeID and moved to a desired directory as a personal article library
Major Features:
- Select the reference to import from the email or web browser: On Unix machines, cb2Bib automatically detects mouse selections and clipboard changes. On Windows machines, copy or Ctrl-C is necessary to activate cb2Bib automatic processing.
- cb2Bib automatic processing: Once text is selected cb2Bib initiates the automatic reference extraction. It uses the predefined patterns from file regexp.txt to attempt automatic extraction. See Configuring Files section for setting the user predefined pattern matching expression file. After a successful detection bibliographic fields appear on the cb2Bib item line edits. Manual editing is possible at this stage.
- cb2Bib manual processing: If no predefined format pattern is found or if detection proves to be difficult, a manual data extraction must be performed. Select individual reference items from the cb2Bib clipboard area. A popup menu will appear after selection is made. Choose the corresponding bibliographic field. See BiBTeX Entry Types available as cb2Bib fields. Selection is post-processed and added to the cb2Bib item line edit. cb2Bib field tags will show on the cb2Bib clipboard area. Once the manual processing is done, cb2Bib clipboard area will contain the matching pattern. The pattern can be further edited and stored to the regexp.txt file using Insert Regular Expression, Alt+I. See the Extracting Data from the Clipboard and The Regular Expression Editor sections.
- Download reference to cb2Bib: The cb2Bib has the built-in functionality to interact with publishers "Download reference to Citation Manager" service. Choose BibTeX format, or any other format that you can translate using External Clipboard Preparsing Command. See Additional, Keyboard Functionality, Alt C. Click "Download" from your browser. When asked "Open with..." select cb2Bib. The cb2Bib will be launched if no running instance is found. If already running, it will place the downloaded reference to the clipboard, and it will start processing. Make sure your running instance is aware of clipboard changes. See Buttons Functionality. For convenience, the shell script c2bimport, and the desktop config file c2bimport.desktop are also provided.
- Adding documents: PDF and other documents can be added to the BibTeX reference by dragging the file icon and dropping it into the cb2Bib's panel. Optionally, document files, are renamed to its citeID and moved to a desired directory as a personal article library (See Configuring Documents section). Linked to a reference documents correspond to the BibTeX tag file. Usual reference manager software will permit to retrieve and visualize these files. Download, copy and/or moving is scheduled and performed once the reference is accepted, e.g., once it is saved by pressing Save Reference button.
- Multiple retrieving from PDF files: Multiple PDF or convertible to text files can be sequentially processed by dragging a set of files into cb2Bib's PDFImport dialog. By starting the processing button, files are sequentially converted to text and send to cb2Bib clipboard panel for reference extraction. See PDF Reference Import for details.
- Journal-Volume-Page Queries: Takes input Journal, Volume, and first page from the corresponding edit lines and attempts to complete the reference. Additionally, queries consider Title, DOI, and an excerpt, which is a simplified clipboard panel contents. See Configuring Network section, the distribution file netqinf.txt, and Release Note cb2Bib 0.3.5 for customization and details.
- BibTeX Editor: cb2Bib includes a practical text editor suitable for corrections and additions. cb2Bib capabilities are readily available within the editor. E.g., the reference is first sent to cb2Bib by selecting it, and later retrieved from cb2Bib to the editor using 'right click' + 'Paste Current BibTeX'. Interconversions Unicode LaTeX, long abbreviated journal name, and adding/renaming PDF files are easily available. BibTeX Editor is also accessible through a shell command line.
- Advanced features, and processing and extraction details are described in the following sections:
- Extracting Data from the Clipboard
- Processing of author's names
- Processing of journal names
- Field Recognition Rules
- The Regular Expression Editor
- Configuration information is described in the following sections:
- Configuration
- Predefined cite ID placeholders
- Utilities and modules are described in the following sections:
- Search BibTeX files for references
- Embedded File Editor
- PDF Reference Import
- The cb2Bib Command Line
- Reading and writing bibliographic metadata
- The cb2Bib Annote
- The cb2Bib Citer
Enhancements:
- Added Check Repeated functionality for current reference
- Fixed parser not processing last field in inverted comma style BibTeX
- Set netqinf.txt to use internal XML parser for PubMed
- Fixed packaging, double copying scripts and initial external tool setting
- Fixed c2bciter script not passing all arguments (Thanks to F. Rusconi)
Requirements:
To compile cb2Bib, the following libraries must be present and accessible:
- Qt 4.4.0 or higher from Trolltech. On a Linux platform with Qt preinstalled, make sure that the devel packages and Qt tools are also present.
- WebKit library (optional) to compile cb2Bib Annote viewer. It is already included in Qt > 4.4.0 library. No special action/flag is needed during compilation.
- X11 header files if compiling on Unix platforms. Concretely, headers X11/Xlib.h and X11/Xatom.h are needed.
- The header files fcntl.h and unistd.h from glibc-devel package are also required. Otherwise compilation will fail with reference list.cpp:227: `close' undeclared.
Added: 2009-06-30 License: GPL Price: FREE
14 downloads
DBL Browser 2.0b
DBL Browser project is an offline browser for digital bibliographic libraries. more>> <<less
Download (6.7MB)
Added: 2007-01-26 License: GPL (GNU General Public License) Price:
1002 downloads
CDS Invenio 0.92.1
CDS Invenio is a suite of applications that provides the framework and tools for building digital library server. more>>
CDS Invenio (formerly CDSware) is a suite of applications that provides the framework and tools for building and managing an autonomous digital library server.
The project complies with the Open Archives Initiative metadata harvesting protocol (OAI-PMH) and uses MARC 21 as its underlying bibliographic standard. Its flexibility and performance make it a comprehensive solution for the management of document repositories of moderate to large size.
CDS Invenio is developed by, maintained by, and used at, the CERN Document Server. At CERN, CDS Invenio manages over 500 collections of data, consisting of over 800,000 bibliographic records, covering preprints, articles, books, journals, photographs, and more. Besides CERN, CDS Invenio is currently installed and in use by over a dozen scientific institutions worldwide.
Main features:
Navigable collection tree
- Documents organised in collections
- Regular and virtual collection trees
- Customizable portalboxes for each collection
- At CERN, over 800,000 documents in 500 collections
Powerful search engine
- Specially designed indexes to provide Google-like search speeds for repositories of up to 1,500,000 records
- Customizable simple and advanced search interfaces
- Combined metadata, fulltext and citation search in one go
- Results clustering by collection
Flexible metadata
- Standard metadata format (MARC)
- Handling articles, books, theses, photos, videos, museum objects and more
- Customizable display and linking rules
User personalization
- user-defined document baskets
- user-defined automated email notification alerts
- basket-sharing within user groups
- Amazon-like user comments for documents in repository and shared baskets
<<lessThe project complies with the Open Archives Initiative metadata harvesting protocol (OAI-PMH) and uses MARC 21 as its underlying bibliographic standard. Its flexibility and performance make it a comprehensive solution for the management of document repositories of moderate to large size.
CDS Invenio is developed by, maintained by, and used at, the CERN Document Server. At CERN, CDS Invenio manages over 500 collections of data, consisting of over 800,000 bibliographic records, covering preprints, articles, books, journals, photographs, and more. Besides CERN, CDS Invenio is currently installed and in use by over a dozen scientific institutions worldwide.
Main features:
Navigable collection tree
- Documents organised in collections
- Regular and virtual collection trees
- Customizable portalboxes for each collection
- At CERN, over 800,000 documents in 500 collections
Powerful search engine
- Specially designed indexes to provide Google-like search speeds for repositories of up to 1,500,000 records
- Customizable simple and advanced search interfaces
- Combined metadata, fulltext and citation search in one go
- Results clustering by collection
Flexible metadata
- Standard metadata format (MARC)
- Handling articles, books, theses, photos, videos, museum objects and more
- Customizable display and linking rules
User personalization
- user-defined document baskets
- user-defined automated email notification alerts
- basket-sharing within user groups
- Amazon-like user comments for documents in repository and shared baskets
Download (4.2MB)
Added: 2007-05-04 License: GPL (GNU General Public License) Price:
904 downloads
MARC 1.07
MARC is a Perl extension to manipulate MAchine Readable Cataloging records. more>>
MARC is a Perl extension to manipulate MAchine Readable Cataloging records.
SYNOPSIS
use MARC;
# constructors
$x=MARC->new();
$x=MARC->new("filename","fileformat");
$x->openmarc({file=>"makrbrkr.mrc",format=>"marcmaker",
increment=>"5", lineterm=>"n",
charset=>%char_hash});
$record_num=$x->createrecord({leader=>"00000nmm 2200000 a 4500"});
# input/output operations
$y=$x->nextmarc(10); # increment
$x->closemarc();
print $x->marc_count();
$x->deletemarc({record=>2,field=>110});
$y=$x->selectmarc([4,21-50,60]);
# character translation
my %inc = %{$x->usmarc_default()}; # MARCMaker input charset
my %outc = %{$x->ustext_default()}; # MARCBreaker output charset
# data queries
@records = $x->searchmarc({field=>"245"});
@records = $x->searchmarc({field=>"260",subfield=>"c",
regex=>"/19../"});
@records = $x->searchmarc({field=>"245",notregex=>"/huckleberry/i"});
@results = $x->getvalue({record=>12,field=>856,subfield=>u});
# header and control field operations
$rldr = $x->unpack_ldr($record);
print "Desc is $rldr->{Desc}";
next if ($x->bib_format($record) eq SERIALS);
$rff = $x->unpack_008($record);
last if ($rff->{Date1}=~/00/ or $rff->{Date2}=~/00/);
# data modifications
$x->addfield({record=>"2", field=>"245",
i1=>"1", i2=>"4", ordered=>y, value=>
[a=>"The adventures of Huckleberry Finn /",
c=>"Mark Twain ; illustrated by E.W. Kemble."]});
my $update245 = {field=>245,record=>2,ordered=>y};
my @u245 = $x->getupdate($update245);
$x->deletemarc($update245);
$x->addfield($update245, @u245_modified);
# outputs
$y = $x->output({format=>"marcmaker", charset=>%outc});
$x->output({file=>">>my_text.txt",format=>"ascii",record=>2});
$x->output({file=>">my_marcmaker.mkr",format=>"marcmaker",
nolinebreak=>y,lineterm=>n});
$x->output({file=>">titles.html",format=>"html", 245=>"Title: "});
# manipulation of individual marc records.
@recs = $x[1..$#$x];
grep {$_->unpack_ldr() && 0} @recs;
@LCs = grep {$_->unp_ldr{Desc} eq a &&
$_->getvalue({field=>040}) =~/DLCc_.DLC/} @recs;
foreach my $rec (@LCs) {
print $rec->output({format=>usmarc});
}
# manipulation as strings.
foreach my $rec (@LCs) {
my $stringvar = $rec->as_string();
$stringvar=~s[^(
100s # main entries of this stripe..
..s # (dont care about indicators)
c_.s*
)(S) # take the first letter..
] [
${1}uc($2) # and upcase it. All authors have
# upcase first letters in my library.
]xm; # x means ignore whitespace and allow
# embedded comments.
$rec->from_string($stringvar);
my ($i2,$article) = $stringvar =~/245 .(.) c_.(.{0,9})/;
$article = substr($article,0,$i2) if $i2=~/d/;
print "article $article is not common" unless $COMMON_ARTS{$article};
}
MARC.pm is a Perl 5 module for reading in, manipulating, and outputting bibliographic records in the USMARC format. You will need to have Perl 5.004 or greater for MARC.pm to work properly. Since it is a Perl module you use MARC.pm from one of your own Perl scripts. To see what sorts of conversions are possible you can try out a web interface to MARC.pm which will allow you to upload MARC files and retrieve the results (for details see the section below entitled "Web Interface").
However, to get the full functionality you will probably want to install MARC.pm on your server or PC. MARC.pm can handle both single and batches of MARC records. The limit on the number of records in a batch is determined by the memory capacity of the machine you are running. If memory is an issue for you MARC.pm will allow you to read in records from a batch gradually. MARC.pm also includes a variety of tools for searching, removing, and even creating records from scratch.
<<lessSYNOPSIS
use MARC;
# constructors
$x=MARC->new();
$x=MARC->new("filename","fileformat");
$x->openmarc({file=>"makrbrkr.mrc",format=>"marcmaker",
increment=>"5", lineterm=>"n",
charset=>%char_hash});
$record_num=$x->createrecord({leader=>"00000nmm 2200000 a 4500"});
# input/output operations
$y=$x->nextmarc(10); # increment
$x->closemarc();
print $x->marc_count();
$x->deletemarc({record=>2,field=>110});
$y=$x->selectmarc([4,21-50,60]);
# character translation
my %inc = %{$x->usmarc_default()}; # MARCMaker input charset
my %outc = %{$x->ustext_default()}; # MARCBreaker output charset
# data queries
@records = $x->searchmarc({field=>"245"});
@records = $x->searchmarc({field=>"260",subfield=>"c",
regex=>"/19../"});
@records = $x->searchmarc({field=>"245",notregex=>"/huckleberry/i"});
@results = $x->getvalue({record=>12,field=>856,subfield=>u});
# header and control field operations
$rldr = $x->unpack_ldr($record);
print "Desc is $rldr->{Desc}";
next if ($x->bib_format($record) eq SERIALS);
$rff = $x->unpack_008($record);
last if ($rff->{Date1}=~/00/ or $rff->{Date2}=~/00/);
# data modifications
$x->addfield({record=>"2", field=>"245",
i1=>"1", i2=>"4", ordered=>y, value=>
[a=>"The adventures of Huckleberry Finn /",
c=>"Mark Twain ; illustrated by E.W. Kemble."]});
my $update245 = {field=>245,record=>2,ordered=>y};
my @u245 = $x->getupdate($update245);
$x->deletemarc($update245);
$x->addfield($update245, @u245_modified);
# outputs
$y = $x->output({format=>"marcmaker", charset=>%outc});
$x->output({file=>">>my_text.txt",format=>"ascii",record=>2});
$x->output({file=>">my_marcmaker.mkr",format=>"marcmaker",
nolinebreak=>y,lineterm=>n});
$x->output({file=>">titles.html",format=>"html", 245=>"Title: "});
# manipulation of individual marc records.
@recs = $x[1..$#$x];
grep {$_->unpack_ldr() && 0} @recs;
@LCs = grep {$_->unp_ldr{Desc} eq a &&
$_->getvalue({field=>040}) =~/DLCc_.DLC/} @recs;
foreach my $rec (@LCs) {
print $rec->output({format=>usmarc});
}
# manipulation as strings.
foreach my $rec (@LCs) {
my $stringvar = $rec->as_string();
$stringvar=~s[^(
100s # main entries of this stripe..
..s # (dont care about indicators)
c_.s*
)(S) # take the first letter..
] [
${1}uc($2) # and upcase it. All authors have
# upcase first letters in my library.
]xm; # x means ignore whitespace and allow
# embedded comments.
$rec->from_string($stringvar);
my ($i2,$article) = $stringvar =~/245 .(.) c_.(.{0,9})/;
$article = substr($article,0,$i2) if $i2=~/d/;
print "article $article is not common" unless $COMMON_ARTS{$article};
}
MARC.pm is a Perl 5 module for reading in, manipulating, and outputting bibliographic records in the USMARC format. You will need to have Perl 5.004 or greater for MARC.pm to work properly. Since it is a Perl module you use MARC.pm from one of your own Perl scripts. To see what sorts of conversions are possible you can try out a web interface to MARC.pm which will allow you to upload MARC files and retrieve the results (for details see the section below entitled "Web Interface").
However, to get the full functionality you will probably want to install MARC.pm on your server or PC. MARC.pm can handle both single and batches of MARC records. The limit on the number of records in a batch is determined by the memory capacity of the machine you are running. If memory is an issue for you MARC.pm will allow you to read in records from a batch gradually. MARC.pm also includes a variety of tools for searching, removing, and even creating records from scratch.
Download (0.079MB)
Added: 2007-05-15 License: Perl Artistic License Price:
895 downloads
refbase 0.8
refbase is a Web-based multi-user interface for managing scientific literature and bibliographic references. more>>
refbase is a Web-based multi-user interface for managing scientific literature and bibliographic references. It offers powerful search engine and automatically generated citation lists.
Main features:
- search the database using different search forms
- search within results
- browse found records and view selected records in detail
- display rich text (i.e. italics, super/sub-script, greek letters)
- extract literature cited within a text
- track queries using RSS
- a print-friendly view
- display the selected records in different citation formats
- user specific fields which are stored individually for each user
- display or search within only the users own literature
- export selected records to MODS XML and (via the GPLed bibutils programs) to BibTex, EndNote, and RIS
- automatic email announcements for newly added records
- save and recall search queries
- adding records to user-specific groups
- add/edit/delete records as well as file upload & download links
- import of full records from Cambridge Scientific Abstracts
- user management interface provided to the database admin
- set access permissions on a per-user basis
- People with access to a shell on the refbase server can use the tools in the contrib/endnote directory to batch transfer many records from Endnote into refbase.
<<lessMain features:
- search the database using different search forms
- search within results
- browse found records and view selected records in detail
- display rich text (i.e. italics, super/sub-script, greek letters)
- extract literature cited within a text
- track queries using RSS
- a print-friendly view
- display the selected records in different citation formats
- user specific fields which are stored individually for each user
- display or search within only the users own literature
- export selected records to MODS XML and (via the GPLed bibutils programs) to BibTex, EndNote, and RIS
- automatic email announcements for newly added records
- save and recall search queries
- adding records to user-specific groups
- add/edit/delete records as well as file upload & download links
- import of full records from Cambridge Scientific Abstracts
- user management interface provided to the database admin
- set access permissions on a per-user basis
- People with access to a shell on the refbase server can use the tools in the contrib/endnote directory to batch transfer many records from Endnote into refbase.
Download (0.28MB)
Added: 2006-06-21 License: GPL (GNU General Public License) Price:
1220 downloads
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