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DNA BASER 2.60

DNA BASER 2.60


Visit us for updated info: http://www.DNABaser.com DNA Baser Assembler is easy to use software for simple and batch DNA sequence assembly, DNA sequence analysis, contig editing, metadata integration and mutation detection. It also offers a powerful chromatogram viewer/editor. The truly user-friendly interface makes DNA Baser the best choice for DNA contig assembly. For more details, see the DNA BASER Features page. File formats supported are abi, scf and seq (or FASTA). Features: end clip, export,auto trim... more>>

DNA BASER - Visit us for updated info: http://www.DNABaser.com

DNA Baser Assembler is easy to use software for simple and batch DNA sequence assembly, DNA sequence analysis, contig editing, metadata integration and mutation detection. It also offers a powerful chromatogram viewer/editor. The truly user-friendly interface makes DNA Baser the best choice for DNA contig assembly. For more details, see the DNA BASER Features page.

Why is DNA Baser Assembler special?

Any software company pretends that their product is the best. But lets see for real if DNA Baser can offer you a better proposition. As you will see below we concentrate on adding automatic and batch functions to our product in order to decrease the time. Additional to this, DNA Baser is available at a "kill your competition" price.

Forget about manually trimming the low quality ends of your sequences. DNA Baser Assembler will do it for you!

Do you think you need weeks to assemble hundreds of contigs? What about doing this in minutes? DNA Baser is the only software that can automatically detect and assemble sequences belonging to the same contig based on their filename.

Do you think that is necessary to spend more than 20 minutes to correct discrepancies and mismatches in every contig? Wrong! DNA Baser is the first software which can make correct suggestions in at least 98% of cases.

Have you ever wondered how others laboratories afford to have sequence assembly software in EVERY computer? Simple! They dont spend thousands of dollars for each license. They use DNA Baser Assembler. DNA Baser is affordable, has no annual maintenance fees, technical support is included in price and you have instant access to your key, right after purchase.

You dont have to fill in and submit forms in order to get a trial version. If you want to try it, you can download and install it in less than one minute. No personal data or registration process is required. The trial version is fully functional.

DNA BASER Assembler offers a smart navigation system that takes you to the location of each sequence ambiguity / mutation with a single click.


Enhancements:
Version 2.60

New: Metadata and batch metadata integration.
New: Button to open Windows Explorer in contigs folder, after sequence assembly.
New: Remove vectors from single chromatograms.
New: SEQUENCE ANALISYS - mark al bases with a confidence level (QV) below a specified threshold, in red.
New: Batch convert from chromatogram to Fasta with vector removal and automatic metadata integration.
New: Resizable chromatograms.
Full support for low quality sample ends editing.
100% compatible with Mac via Parallels/Bootcamp/VMWare.
Improved handling of corrupted/invalid ABI/SCF files.
Improved contig editor.
Improved file association.
Improved Assemble to reference.
Improved log window.
Improved file handling: Before starting the contig, check if all files in the JobList are valid. Invalid samples are automatically removed from Job List so the assembly process can continue without human intervention. Build a list of invalid files and report it.
Improved user interface: new toolbar, improved embedded help, interactive help, workflow...
Improved sample viewer: Mark as trusted/un-trusted can now be used also in Sample viewer window
New: Show error message while trying to open empty/invalid FASTA files
Improved: Correctly handle multiple contigs resulted when assembling to a reference.
Improved: menu Save as Fasta/Seq/Scf was replaced with Save all as... and Save selected as.... Now the user can choose where to save the file.


Version 2.10

Batch assembly. Thousand of contigs can be assembled at once.


System Requirements:CPU: 333MHz, 64MB RAM, Video 1024x768, 2MB HDD free space
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Added: 2008-01-08 License: Free Price: Free
101 downloads
VMware Server 1.0.3 Build 44356

VMware Server 1.0.3 Build 44356


VMware Server is a robust yet easy to use product for users new to server virtualization technology. more>>
VMware Server product is a robust yet easy to use software for users new to server virtualization technology.
VMware Server enables companies to partition a physical server into multiple virtual machines, and to start experiencing the benefits of virtualization.
Benefits of VMware Server
Provision a new server in minutes without investing in new hardware.
Run Windows and Linux operating systems and applications on the same physical server.
Increase the utilization of a physical server.
Move virtual machines from one physical host to another without re-configuration.
With VMware Server you can:
Streamline software development and testing by allowing developers to create multiple environments with different operating systems on the same server.
Evaluate software in ready-to-run virtual machines without installation and configuration.
Re-host legacy operating systems such as Windows NT Server 4.0 and Windows 2000 Server in a virtual machine running on new hardware and operating system.
Simplify server provisioning by building a virtual machine once and deploying it multiple times.
Leverage pre-built, ready-to-run virtual appliances that include virtual hardware, operating system and application environments. Virtual appliances for Web, email, proxy and other infratructure services are available for download from the VMTN Virtual Machine Center.
VMware Server is the first step to VMware Virtual Infrastructure
While VMware Server is a compelling product for new virtualization users, VMware Virtual Infrastructure products-ESX Server with Virtual SMP and VirtualCenter with VMotion-enable companies to implement large-scale production server consolidation, business continuity, and enterprise desktop solutions with enterprise-class performance, high availability, manageability and security. View a comparison between VMware Server and VMware Virtual Infrastructure.
Enhancements:
- This release fixes four security vulnerabilities, as reported in CVE-2007-1337, CVE-2007-1877, CVE-2007-1069, and CVE-2007-1876.
- These vulnerabilities permitted denial of service, crashes of Windows guests, or corrupted stack pointers.
- A problem with VMware Tools that caused the guest to run out of memory was fixed.
- A crash in the VIX API was resolved.
- Building of the kernel and the HGFS modules was improved.
- Several occasional crashes were fixed.
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Added: 2007-05-02 License: Freeware Price:
1821 downloads
VMware Player 2.0.0 Build 45731

VMware Player 2.0.0 Build 45731


VMware Player can be used by anyone to run virtual machines on a Linux PC. more>> <<less
Download (63.8MB)
Added: 2007-05-09 License: Freeware Price:
2872 downloads
JumpBox vTiger CRM 1.0

JumpBox vTiger CRM 1.0


JumpBox vTiger CRM is a JumpBox virtual appliance with a pre-configured installation of the vTiger CRM system. more>>
JumpBox vTiger CRM project is a JumpBox virtual appliance with a pre-configured installation of the vTiger CRM system.

Once upon a time, in the raw and exciting days when automobile technology was in its infancy, taking a road trip meant bringing a mechanic along to fix the car every time it broke down. At JumpBox we look at the current state of IT systems and see great similarity with the early automobile.

Today, if you want to deploy and run a server based application you need a mechanic to come along to keep it running. With the automobile, as time passed, the technology improved, cars became vastly more reliable and many more people were able to take to the road.

With JumpBox we’re looking to do the same for server based software. We simplify what has traditionally been complex and deliver server based Open Source applications to an audience that otherwise would be put off by the technical burdens of the old way of doing things.

An integrated software stack in a virtual appliance

A JumpBox bundles the operating system, application and all application dependancies into a single installable module that’s easily deployed using virtualization software from VMWare, Parallels or Xen

Easy to Install

A JumpBox allows you to install a complex server based application without having to know anything about Linux, databases or the command line. You just download, extract the archive and open the application with your virtualization software. Further setup and configuration is handled through a simple web interface.

Simple to manage

The JumpBox platform is pre-configured, tuned and secured to minimize the management needs of the application.

Runs anywhere

Mac OS X, Linux, Windows it doesn’t matter. Thanks to the use of virtualization, JumpBox applications run easily on all the most popular operating systems.

Painless to upgrade

With a JumpBox and the JumpBox Assurance program (launching Q2 2007), management of the system is simple and efficient. Updates to the entire software stack are handled automatically by the platform with minimal user interaction.

Quick to move

With a JumpBox all the application code, data and the runtime are bundled together into a single directory that can easily be moved between systems or even across platforms. This allows you to start using an application by just running it on your desktop. Then when you’re ready you can open it up to the rest of the network and either continue running it on your desktop or easily move it to the server at any time. It doesn’t even matter if the server is running a different operating system, with a JumpBox everything is self contained.

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Added: 2007-07-25 License: Free To Use But Restricted Price:
875 downloads
Untangle Gateway Platform 5.0.1-vmware

Untangle Gateway Platform 5.0.1-vmware


Untangle Gateway Platform is a Linux-based network gateway with pluggable modules for network applications like spam blocking. more>>
Untangle Gateway Platform is a Linux-based network gateway with pluggable modules for network applications like spam blocking, Web filtering, anti-virus, anti-spyware, intrusion prevention, VPN, SSL VPN, firewall, and more.
- Commercial-grade open source alternative to SonicWALL and WatchGuard
- 14 integrated apps - use one or all of them
- Runs on off-the-shelf hardware
Enhancements:
- A package of 5.0.1 as a VMware Virtual Appliance has been released.
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Download (395.2MB)
Added: 2007-08-17 License: GPL (GNU General Public License) Price:
828 downloads
GroundWork Monitor Open Source 5.1.0-4 stable (VMWare Appliance)

GroundWork Monitor Open Source 5.1.0-4 stable (VMWare Appliance)


GroundWork Monitor Open Source is a complete availability monitoring solution. more>>
GroundWork Monitor Open Source is a complete availability monitoring solution that ensures IT infrastructure uptime while identifying issues before they become real problems.

Unifies best-of-breed open source tools - Nagios*, Nmap, SNMP TT, PHP, Apache, MySQL and more — through PHP/AJAX-based components and an integrated user interface to deliver the extensible functionality you require.
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Added: 2007-05-23 License: GPL (GNU General Public License) Price:
909 downloads
NAMP 0.1

NAMP 0.1


NAMP is the NetBSD equivalent of the popular LAMP deployment in the Linux world. more>>
NAMP (NetBSD + Apache + MySQL + PostgreSQL + PHP) is the NetBSD equivalent of the popular LAMP deployment in the Linux world.

It also includes phpMyAdmin and phpPgAdmin for easy administration of the database engines.

NAMP is available as a VMware appliance.
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Added: 2006-11-23 License: GPL (GNU General Public License) Price:
1069 downloads
Linux in a window of Windows 4.0-r0

Linux in a window of Windows 4.0-r0


Linux in a window of Windows. Run the Debian Linux appliance in the free VMware Player side by side with Windows. This is a full desktop Gnome install... more>> <<less
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Added: 2009-04-13 License: Freeware Price: Free
196 downloads
SlaBuntuVMware 0.2

SlaBuntuVMware 0.2


SlaBuntuVMware is a useful installation suite for installing VMware Server on Slackware or Ubuntu. more>>
SlaBuntuVMware is a useful installation suite for installing VMware Server on Slackware or Ubuntu.

The project automatically downloads packages from the VMware site.

Tested on Slackware 11. (Slackware 10.2 might not work - try)
Tested on Ubuntu Desktop Dapper Drake and Ubuntu Desktop Edgy.

IMPORTANT: this suite does not include the vmware server packs,
they are downloaded from the official VMware site.
You also need a server key for activating the product that you must
get (for free) from the VMware web-site (http://www.vmware.com/server/)

INSTALLATION (Slackware Linux) :

a) 1- The perfect setup for running vmware on Slackware is:
Slackware 11 (When you install the OS leave a big partion for your
virtual machines).

Using a good server with an hardware raid controller:

Suggested Partition Table (scsi disks, if ide hda):
/dev/sda1 swap (megs?gb? depends on your system)
/dev/sda2 / 10Gb
/dev/sda3 /home 2Gb
/dev/sda4 /vm (160 Gb the rest for your virtual machines)

You must do a normal install with X support but no KDE.


2- Dropline Gnome (http://www.droplinegnome.net)
It is suggested you run gnome on Slackware 11. Gnome is not
included in the distro cds, therefore you must download
Dropline Gnome.

3- Kernel 2.6.x (with the kernel sources into /usr/src/linux)
(Default Kernel 2.4.33.3 works perfectly though)

CAUTION: take a look on www.vmware.com for the
supported kernel 2.6 versions.

OR

- If you have problems building 2.6.x vmware kernel module, just use
the normal 2.4.33.3 kernel supplied with your slackware, or try the test26.s
or huge26.s supplied with your slackware cds.

b) - The base setup for running vmware on Slackware is:
1- Slackware 11
2- Kde(not tested can have problems with some libraries)
(if you do not want to Download and install Dropline Gnome)
3- Kernel 2.4.33 (with the kernel sources into /usr/src/linux)

Using a normal pc with no raid controller (so you should use linux
raid software):

Suggested Partition Table (scsi disks, if ide hda):
/dev/md1 swap (megs?gb? depends on your system)
/dev/md2 / 10Gb
/dev/md3 /home 2Gb
/dev/md4 /vm (100 Gb? the rest for your virtual machines)

---------------------------------------------------------------------------
If you do not want to use Gnome or Kde go at the end of this file.
---------------------------------------------------------------------------

2) After making sure you have everything (including the kernel sources
inside /usr/src/linux) you can run:

3) as root ./setup.sh

4) follow the steps provided
(you can hit ENTER to most of the questions (90%)

4) provide the vmware free key when needed
(ask for it on the site http://www.vmware.com)

6) under an X session: Run the command "vmware" and Enjoy vmware!

INSTALLATION (Ubuntu Desktop, Alternate,NOT Server):

1) edit /etc/apt/sources.list and uncomment all the lines starting with deb

2) open a terminal (xterm) and type "sudo ./setup.sh"

3) follow the steps provided
(you can hit ENTER to most of the questions (90%)

4) provide the vmware free key when needed
(ask for it on the site http://www.vmware.com)

5) Run the command "vmware" and Enjoy vmware!

INSTALLATION ON UBUNTU SERVER

- Not tried yet, but you should at first download and install X11 and gnome
and then follow the steps provided for Ubuntu Desktop above.

IMPORTANT INFO:

- Remember that vmware server packs are downloaded from the official vmware
site and are property of the VMware Company: http://www.vmware.com/

- Remember that in order to use VMware you should accept the terms of the
VMware license that will be displayed during the installation process.

- Remember that in order to installa VMware you should ask the VMware
fellows for a key. Do this at the VMware site: http://www.vmware.com/

- To create virtual machines you should use the vmware console.
a) Run the command "vmware" and the vmware console starts up.
b) Then connect to localhost.

- After created a virtual machine to run it from the cmd line use:
bash# vmware-cmd vmname.vmx start

Author: Lorenzo Allori

#####################################################

If you do not have Gnome or Kde youll need the following:

#####################################################

- Slack with glibc and glibcsolibs installed. Make sure you
have X11 installed with a window manager.

Packages needed are:
glibc-2.3.6-i486-6.tgz
glibc-solibs-2.3.6-i486-6.tgz
kernel-source-2.4.33.3-noarch-1.tgz
x11-6.9.0-i486-11.tgz
x11-devel-6.9.0-i486-11.tgz
windowmaker-0.92.0-i486-1.tgz

You can find those on http://www.slackware.com.

Download them and to install those just type (as root):

# installpkg pkgname

When you have finished installing all the packages you need remember to run:

# ldconfig

- If you need a window manager you can install windowmaker:

# installpkg windowmaker-0.92-i486.tgz
# wmaker.inst
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Added: 2007-04-30 License: GPL (GNU General Public License) Price:
907 downloads
QEMU Server Tools 0.2a

QEMU Server Tools 0.2a


QEMU Server Tools is a set of simple command-line scripts for managing multiple QEMU VMs easily without requiring a GUI. more>>
QEMU Server Tools is a set of simple command-line scripts for managing multiple QEMU VMs easily without requiring a graphical frontend.

QEMU Server Tools organizes VMs into directories and mimics the usage of command line tools from VMware Server.

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Added: 2006-10-05 License: GPL (GNU General Public License) Price:
1120 downloads
Virtual Appliances Base 0.1.059

Virtual Appliances Base 0.1.059


Virtual Appliances are nano-sized virtual machines with Web user interfaces for deploying instant infrastructure and application more>>
Virtual Appliances are nano-sized virtual machines with Web user interfaces for deploying instant infrastructure and applications.
The are Gentoo Linux based and optimized for use in VMware.
Summary Instructions for using the Base Virtual Appliance
Download the Virtual Appliance.
If you do not have VMware Player, Workstations, Server, GSX, or ESX, Download VMware Virtual Player or VMware Virtual Server and install it.
Unpack the Virtual Appliance zip or tar.bz2 file.
Use your VMWare product to open and run the VirtualAppliancesBase.vmx file
Observe your VMWare console. The Virtual Appliance IP address will be printed there.
Using your Web Browser, open the Virtual Appliance Management console at https://your_ipaddress:8000/
The Mangement console listens on port 8000 and uses https.
Login to the admin console. The factory username:password is admin:admin.
Change the admin password to something secret through Configuration|Authentication
Enter shared storage information in Configuration|Storage
Your shared storage files will now be available via the webserver on the Virtual Appliance at http://your_ipaddress
Enhancements:
- This is a new Virtual Appliance featuring an instant PostgreSQL server and phpPgAdmin.
- It is a fully self contained Virtual Appliance, only 14MB to download, and ready to use with no configuration.
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Added: 2006-07-01 License: Free To Use But Restricted Price:
1212 downloads
BeGtkExtras 1.1

BeGtkExtras 1.1


BeGtkExtras contains GtkFieldEntry and GtkCalendarDateEntry. more>>
BeGtkExtras contains GtkFieldEntry and GtkCalendarDateEntry.

GtkFieldEntry from VMWare converted to C.

GtkCalendarDateEntry, a date entry coupled with a popup calendar, based on GtkFieldEntry for slick editing the way a user would expect it.

BeGTKExtra is intended to be a repository for GTK+ widgets that I write/maintain, for now I need a Date Entry widget and really like the way FieldEntry is done in libview but I use plain C and not C++ for my programs, so it will be a port to C of these widgets.

This package is made by Baruch Even and is heavily based on libview from VMWare and GtkDateEntry by Andrea Zagli.

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Added: 2005-11-24 License: LGPL (GNU Lesser General Public License) Price:
1430 downloads
Qemu launcher 1.7.4

Qemu launcher 1.7.4


Qemu Launcher is a GNOME front-end for the Qemu x86 PC emulator based on GTK. more>>
Qemu Launcher is a GNOME front-end for the Qemu x86 PC emulator based on GTK. Qemu is a command line application so I wrote this so that Qemu is more accessible from the desktop.
Main features:
- Create and save multiple VM configurations
- Disk image creation from the GUI using dd, qemu-mkcow, and vmdk2raw for raw, COW, and VMWare converted images respectively.
- Provides Qemu console access via xterm
- Configurations stored in users home directory in ~/.qemu-launcher
- Disk images can be stored anywhere
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Download (0.059MB)
Added: 2007-06-10 License: GPL (GNU General Public License) Price:
884 downloads
libview 0.5.6

libview 0.5.6


libview is VMwares Incredibly Exciting Widgets, a collection of GTK+ widgets used within VMware products. more>>
libview library is a collection of widgets under the MIT license that we developed at VMware while working on Workstation 5. We felt they were general purpose enough to have value to the community. We have benefitted a lot from open source, and felt it was time to make a genuine effort to give back.
Our intention is for the libview SourceForge project to be the one place where these widgets will be developed and maintained. We will not be developing them in-house and pushing them out to the CVS repository. What you see on SourceForge CVS is what were using at VMware. We will be adding more widgets over time to libview as we write them.
Most of the widgets are written in C++ for gtkmm. While this does limit the usefulness to many projects, the projects are free to rewrite them in C and use them.
libview 0.5.1 has been released. This version includes two new widgets, the DeadEntry (a Gtk::Entry that is greyed out when no longer editable) and UndoableTextView (a Gtk::TextView with built-in undo/redo support).
There were some additional bug fixes, and a few test programs have been added.
Enhancements:
- An annoying yet amusing bug in view::FieldEntry was just discovered and fixed.
- Depending on the delimiter used in fields, certain keys may were not allowed to be inputted.
- In the case of our test, where "-" was used as a field delimiter, the character "6" wasnt considered a valid character.
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Download (0.32MB)
Added: 2005-12-16 License: GPL (GNU General Public License) Price:
1412 downloads
Virtual Appliances Cacti Server Build 75

Virtual Appliances Cacti Server Build 75


Virtual Appliances are nano-sized virtual machines with Web user interfaces for deploying instant infrastructure. more>>
Virtual Appliances are nano-sized virtual machines with Web user interfaces for deploying instant infrastructure and applications. They are Gentoo Linux based and optimized for use in VMware and Xen.
Virtual Appliances are free to download and use, and you can choose from a simple Web server, an Apache Tomcat server, a MySQL server, and a PostgreSQL server.
Enhancements:
- This Virtual Appliance server runs Cacti, which is a network graphing solution based on RDDTool.
- It is used to provide real-time and historical visualization of network activities.
- The Cacti Server includes onboard MySQL and PHPmyAdmin in a 40MB download package to run under any VMWare product or VirtualPC.
- As with other Virtual Appliances, this Cacti Server can use Virtual Hard drives automatically, which allows for a database of any practical size.
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Added: 2006-12-07 License: Free To Use But Restricted Price:
624 downloads
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