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DNA BASER 2.60

Visit us for updated info: http://www.DNABaser.com DNA Baser Assembler is easy to use software for simple and batch DNA sequence assembly, DNA sequence analysis, contig editing, metadata integration and mutation detection. It also offers a powerful chromatogram viewer/editor. The truly user-friendly interface makes DNA Baser the best choice for DNA contig assembly. For more details, see the DNA BASER Features page. File formats supported are abi, scf and seq (or FASTA). Features: end clip, export,auto trim... more>>

DNA BASER - Visit us for updated info: http://www.DNABaser.com

DNA Baser Assembler is easy to use software for simple and batch DNA sequence assembly, DNA sequence analysis, contig editing, metadata integration and mutation detection. It also offers a powerful chromatogram viewer/editor. The truly user-friendly interface makes DNA Baser the best choice for DNA contig assembly. For more details, see the DNA BASER Features page.

Why is DNA Baser Assembler special?

Any software company pretends that their product is the best. But lets see for real if DNA Baser can offer you a better proposition. As you will see below we concentrate on adding automatic and batch functions to our product in order to decrease the time. Additional to this, DNA Baser is available at a "kill your competition" price.

Forget about manually trimming the low quality ends of your sequences. DNA Baser Assembler will do it for you!

Do you think you need weeks to assemble hundreds of contigs? What about doing this in minutes? DNA Baser is the only software that can automatically detect and assemble sequences belonging to the same contig based on their filename.

Do you think that is necessary to spend more than 20 minutes to correct discrepancies and mismatches in every contig? Wrong! DNA Baser is the first software which can make correct suggestions in at least 98% of cases.

Have you ever wondered how others laboratories afford to have sequence assembly software in EVERY computer? Simple! They dont spend thousands of dollars for each license. They use DNA Baser Assembler. DNA Baser is affordable, has no annual maintenance fees, technical support is included in price and you have instant access to your key, right after purchase.

You dont have to fill in and submit forms in order to get a trial version. If you want to try it, you can download and install it in less than one minute. No personal data or registration process is required. The trial version is fully functional.

DNA BASER Assembler offers a smart navigation system that takes you to the location of each sequence ambiguity / mutation with a single click.

Enhancements:
Version 2.60

New: Metadata and batch metadata integration.
New: Button to open Windows Explorer in contigs folder, after sequence assembly.
New: Remove vectors from single chromatograms.
New: SEQUENCE ANALISYS - mark al bases with a confidence level (QV) below a specified threshold, in red.
New: Batch convert from chromatogram to Fasta with vector removal and automatic metadata integration.
New: Resizable chromatograms.
Full support for low quality sample ends editing.
100% compatible with Mac via Parallels/Bootcamp/VMWare.
Improved handling of corrupted/invalid ABI/SCF files.
Improved contig editor.
Improved file association.
Improved Assemble to reference.
Improved log window.
Improved file handling: Before starting the contig, check if all files in the JobList are valid. Invalid samples are automatically removed from Job List so the assembly process can continue without human intervention. Build a list of invalid files and report it.
Improved user interface: new toolbar, improved embedded help, interactive help, workflow...
Improved sample viewer: Mark as trusted/un-trusted can now be used also in Sample viewer window
New: Show error message while trying to open empty/invalid FASTA files
Improved: Correctly handle multiple contigs resulted when assembling to a reference.
Improved: menu Save as Fasta/Seq/Scf was replaced with Save all as... and Save selected as.... Now the user can choose where to save the file.

Version 2.10

Batch assembly. Thousand of contigs can be assembled at once.

System Requirements:CPU: 333MHz, 64MB RAM, Video 1024x768, 2MB HDD free space<<less

Download (1.3Mb)

Added: 2008-01-08 License: Free Price: Free

101 downloads

HTML Entity Based Codepage Inference 0.01

HEBCI is a technique that allows a Web form handler to transparently detect the character set with which its data was encoded. more>> <<less

Download (0.005MB)

Added: 2005-07-05 License: GPL (GNU General Public License) Price:

1575 downloads

DB based NetFlow Collector 1.0

DB based NetFLow Collector aims to collect Cisco NetFlow data and store it to a database. more>>

DB based NetFLow Collector aims to collect Cisco NetFlow data and store it to a database.
DB based NetFlow Collector has a plugin interface, which makes it flexible for fitting in particular tasks.
Enhancements:
- First release. post your comments/bug reports.

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Download (0.47MB)

Added: 2006-06-19 License: GPL (GNU General Public License) Price:

1231 downloads

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Nixs Web-based SSH client 0.0.3

Nixs Web-based SSH client has a backend written in C/glib and a frontend written in PHP. more>>

Nixs Web-based SSH client has a backend written in C/glib and a frontend written in PHP. The project talks to the backend via a Unix socket.
The backend maintains a number of SSH processes in TTYs, reads their TTYs, and sends the contents to PHP for formatting. PHP accepts input and passes it to the correct TTY for processing.
Enhancements:
- CR/LF interpretation was improved.
- Escape sequences were added.
- GOption command line parsing was added.

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Download (0.032MB)

Added: 2007-01-17 License: GPL (GNU General Public License) Price:

1031 downloads

Web-Based Adult Content Server 0.7.0

Web-Based Adult Content Server is a suite of programs which manage photo sets and video clips of an adult nature. more>>

Web-Based Adult Content Server is a suite of programs which manage photo sets and video clips of an adult nature.
It runs on a home Linux/Unix server and creates a personalized adult Web server in which to store, preuse, and catalogue a personal collection of adult material.
Web-Based Adult Content Server has many features, like model catalogs, attribute-based searching, randomized highlights, new addition lists, and a flexible bookmark mechanism.
Enhancements:
- This release has new features and many bugfixes.
- It includes a new Web-based Model Manager application, locations-based filtering (e.g. Bathroom), and a new connections infrastructure for galleries and ad-hoc collections.

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Download (0.52MB)

Added: 2007-07-09 License: GPL (GNU General Public License) Price:

848 downloads

Rule Set Based Access Control 1.3.5

Rule Set Based Access Control (RSBAC) is a Free Software security extension for current Linux kernels. more>>

Rule Set Based Access Control (RSBAC) is a Free Software security extension for current Linux kernels. Rule Set Based Access Control is based on the Generalized Framework for Access Control (GFAC) by Abrams and LaPadula and provides a flexible system of access control based on several modules.
All security relevant system calls are extended by security enforcement code. This code calls the central decision component, which in turn calls all active decision modules and generates a combined decision. This decision is then enforced by the system call extensions.
Main features:
- Free Open Source (GPL) Linux kernel security solution
- Independent of governments and big companies
- Several well-known and new security models, like MAC, ACL and RC
- On-access virus scanning with the Dazuko interface
- Detailed control over individual user and program network accesses
- Fully access controlled kernel level user management
- Any combination of security models possible
- Easily extensible: write your own model for runtime registration
- Support for latest kernels and stable for production use
Enhancements:
- This release relates to kernel 2.4.34.5 and 2.6.22.1.
- There are important fixes with some compilation errors and an important bug with User Management password hashing, introduced with the newer 2.6 kernel crypto API.
- Some security has been added with safety measures against null pointers.

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Download (0.36MB)

Added: 2007-07-20 License: GPL (GNU General Public License) Price:

831 downloads

Project-based Calendaring System 0.7.1-1

Project-based Calendaring System is a calendaring system useful for project managers and groupware use. more>>

Project-Based Calendaring System (in short PBCS) is an open source web-based calendaring system, designed to be an useful aid for people who manage schedules for one or more persons.
Project-based Calendaring Systems main feature, which distinguishes it from all other calendar applications, is that schedule planners can plan schedules for other people easily using day or week overviews showing multiple people at once.
There are the regular single-user overviews for those who look mainly at their own calendar. For people on the road it is now possible to sync your appointments into a Palm PDA.
Enhancements:
- Added hooks to support notes from external sources. Added hooks day_notes_after and week_notes_after.
- Recurrence settings are remembered in the appointment form.
- Fixed Early and Late Appointments to show in the mulit-day and single-week overview
- The note form and the appointment for now have back buttons
- Fixed IE javascript errors in the user picker and the user & group administration section.
- Fixed IE javascript error in the installer_pbcs.php.
- Now IE6 and 7 should be able to install 0.7.1!

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Download (2.7MB)

Added: 2007-05-06 License: GPL (GNU General Public License) Price:

906 downloads

Know Base 1.3

Know Base project consists of knowledge, document, and project management tool. more>>

Know Base project consists of knowledge, document, and project management tool.

Know Base is a Web-based knowledge management system. It allows users to share files and projects across multiple business divisions.

A unique notification system alerts users when projects are modified, or when new projects are added that match their search terms.

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Download (0.035MB)

Added: 2007-01-18 License: GPL (GNU General Public License) Price:

1010 downloads

C++ base 1.0

C++ base is a base class suite contains several powerful c++ base classes for basic encapsulation. more>>

C++ base is a base class suite contains several powerful c++ base classes for basic encapsulation of low level operating system calls and basic library functions.

Further packages you may access from this page require the installation of this base package

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Download (0.10MB)

Added: 2006-10-23 License: GPL (GNU General Public License) Price:

1097 downloads

base::ball 0.0.2

base::ball - b all the namespaces under the given one(s). more>>

base::ball - "b" all the namespaces under the given one(s).

SYNOPSIS

use base::ball qw(Foo::Utils);

equivalent to:

use base qw(Foo::Utils);
use base qw(Foo::Utils::Data);
use base qw(Foo::Utils::UI);
use base qw(Foo::Utils::Sys);
use base qw(Foo::Utils::Sys::Unix);
use base qw(Foo::Utils::Sys::Win32);
use base qw(Foo::Utils::Run);

Recursively searches the directory that the given name spaces are in to also use base on their "child" name spaces based on any .pm files found and any directories that belong to that .pm

In other words, assuming that the Foo/ that Foo::Utils is in has:

Utils/Data.pm, Utils/UI.pm, Utils/Sys.pm, Utils/Sys/Unix.pm, Utils/Sys/Win32.pm, Utils/Run.pm

then the synopsis is correct.

Note it does not follow directories who do not firts have a .pm, in other words:
Foo/Utils/Whatever/Fiddle.pm will no get Foo:Utils::Whatever::Fiddle as base unless Foo/Utils/Whatever.pm exists (and therefore Foo::Utils::Whatever is a base)

This is by design for good reasons and given enough popular demand may lead to support for it.

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Download (0.004MB)

Added: 2007-06-27 License: Perl Artistic License Price:

849 downloads

Acme::MorningMusume::Base 0.07

Acme::MorningMusume::Base is a baseclass of the class represents each member of Morning Musume. more>>

Acme::MorningMusume::Base is a baseclass of the class represents each member of Morning Musume.

SYNOPSIS

use Acme::MorningMusume;

my $musume = Acme::MorningMusume->new;

# retrieve the members as a list of
# Acme::MorningMusume::Base based objects
my @members = $musume->members;

for my $member (@members) {
my $name_ja = $member->name_ja;
my $first_name_ja = $member->first_name_ja;
my $family_name_ja = $member->family_name_ja;
my $name_en = $member->name_en;
my $first_name_en = $member->first_name_en;
my $family_name_en = $member->family_name_en;
my $nick = $member->nick; # arrayref
my $birthday = $member->birthday; # Date::Simple object
my $age = $member->age;
my $blood_type = $member->blood_type;
my $hometown = $member->hometown;
my $emoticon = $member->emoticon; # arrayref
my $class = $member->class;
my $graduate_date = $member->graduate_date; # Date::Simple object

my $count;
my $images = $member->images(limit => 5);
while (my $image = $images->next) {
$count++;
my $content_url = $image->content_url;
my $context_url = $image->context_url;
$image->save_content(base => image . $count);
$image->save_context(base => page . $count);
}
}

Acme::MorningMusume::Base is a baseclass of the class represents each member of Morning Musume.

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Download (0.008MB)

Added: 2006-12-06 License: Perl Artistic License Price:

1052 downloads

Exception::Base 0.07

Exception::Base is a Perl module with lightweight exceptions. more>>

Exception::Base is a Perl module with lightweight exceptions.
SYNOPSIS
# Use module and create needed exceptions
use Exception::Base (
Exception::IO,
Exception::FileNotFound => { message => File not found,
isa => Exception::IO },
);
# try / catch
try Exception eval {
do_something() or throw Exception::FileNotFound
message=>Something wrong,
tag=>something;
};
# Catch the Exception::Base, other exceptions throw immediately
if (catch Exception::Base my $e) {
# $e is an exception object for sure, no need to check if is blessed
if ($e->isa(Exception::IO)) { warn "IO problem"; }
elsif ($e->isa(Exception::Die)) { warn "eval died"; }
elsif ($e->isa(Exception::Warn)) { warn "some warn was caught"; }
elsif ($e->with(tag=>something)) { warn "something happened"; }
elsif ($e->with(qr/^Error/)) { warn "some error based on regex"; }
else { $e->throw; } # rethrow the exception
}
# the exception can be thrown later
$e = new Exception::Base;
$e->throw;
# try with array context
@v = try Exception::Base [eval { do_something_returning_array(); }];
# use syntactic sugar
use Exception::Base qw , Exception::IO;
try eval {
throw Exception::IO;
}; # dont forget about semicolon
catch my $e, [Exception::IO]; # Exception::Base is by default
This class implements a fully OO exception mechanism similar to Exception::Class or Class::Throwable. It does not depend on other modules like Exception::Class and it is more powerful than Class::Throwable. Also it does not use closures as Error and does not polute namespace as Exception::Class::TryCatch. It is also much faster than Exception::Class.
Main features:
- fast implementation of an exception object
- fully OO without closures and source code filtering
- does not mess with $SIG{__DIE__} and $SIG{__WARN__}
- no external modules dependencies, requires core Perl modules only
- implements error stack, the try/catch blocks can be nested
- shows full backtrace stack on die by default
- the default behaviour of exception class can be changed globally or just for the thrown exception
- the exception can be created with defined custom properties
- matching the exception by class, message or custom properties
- matching with string, regex or closure function
- creating automatically the derived exception classes ("use" interface)
- easly expendable, see Exception::System class for example

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Download (0.023MB)

Added: 2007-05-23 License: Perl Artistic License Price:

884 downloads

MP3::Find::Base 0.06

MP3::Find::Base is a base class for MP3::Find backends. more>>

MP3::Find::Base is a base class for MP3::Find backends.

SYNOPSIS

package MyFinder;
use base MP3::Find::Base;

sub search {
my $self = shift;
my ($query, $dirs, $sort, $options) = @_;

# do something to find and sort the mp3s...
my @results = do_something(...);

return @results;
}

package main;
my $finder = MyFinder->new;

# see MP3::Find for details about %options
print "$_n" foreach $finder->find_mp3s(%options);

This is the base class for the classes that actually do the searching and sorting for MP3::Find.

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Download (0.029MB)

Added: 2006-11-08 License: Perl Artistic License Price:

1080 downloads

Persistent::Base 0.52

Persistent::Base is an Abstract Persistent Base Class. more>>

Persistent::Base is an Abstract Persistent Base Class.

SYNOPSIS

### we are a subclass of ... ###
use Persistent::Base;
@ISA = qw(Persistent::Base);

ABSTRACT

This is an abstract class used by the Persistent framework of classes to implement persistence with various types of data stores. This class provides the methods and interface for implementing Persistent classes. Refer to the Persistent documentation for a very thorough introduction to using the Persistent framework of classes.

This class is part of the Persistent base package which is available from:

http://www.bigsnow.org/persistent
ftp://ftp.bigsnow.org/pub/persistent

Before we get started describing the methods in detail, it should be noted that all error handling in this class is done with exceptions. So you should wrap an eval block around all of your code. Please see the Persistent documentation for more information on exception handling in Perl.

ABSTRACT METHODS THAT NEED TO BE OVERRIDDEN IN THE SUBCLASS

datastore -- Sets/Returns the Data Store Parameters

eval {
### set the data store ###
$person->datastore(@args);

### get the data store ###
$href = $person->datastore();
};
croak "Exception caught: $@" if $@;

Returns (and optionally sets) the data store of the object. This method throws Perl execeptions so use it with an eval block.

Setting the data store can involve anything from initializing a connection to opening a file. Getting a data store usually means returning information pertaining to the data store in a useful form, such as a connection to a database or a location of a file.

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Download (0.038MB)

Added: 2007-05-18 License: Perl Artistic License Price:

889 downloads

Qalculate! Bases 0.9.4

Qalculate! is a multi-purpose desktop calculator for GNU/Linux. more>>

Qalculate! is a multi-purpose desktop calculator for GNU/Linux. Qalculate! project is small and simple to use but with much power and versatility underneath.
Main features:
- Redesigned GUI with history view in the main window
- Display of as-you-type expression parsing and function hints
- Enhanced completion
- Scaling of result display to vertically fit the window
- Nicer history listing
- Enhanced result display with much nicer parentheses
- Meta modes
- 67 new units: bel (B) and neper (Np), information units such as bit and byte, many convenience units (km/h, deciliter, etc), and more.
- Binary prefixes
- Some new variables and functions
- Fixed help display in new yelp
- Fixed compile with cln-1.1.10
- Fixed regressions in simplification
- Fixed f(x) return type analysis (ex. log(x) represents a real number if x represents a positive). This was by accident unused.
- ...and many more bug fixes and enhancements...

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Download (0.35MB)

Added: 2006-06-02 License: GPL (GNU General Public License) Price:

1239 downloads

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