Bio::NEXUS::HistoryBlock 0.67

Bio::NEXUS::HistoryBlock is a Perl module that represents a HISTORY block of a NEXUS file.

SYNOPSIS

$block_object = new Bio::NEXUS::HistoryBlock(history, $block, $verbose);

This is a class representing a history block in NEXUS file

METHODS

new

Title : new
Usage : block_object = new Bio::NEXUS::HistoryBlock($block_type, $commands, $verbose);
Function: Creates a new Bio::NEXUS::HistoryBlock object
Returns : Bio::NEXUS::HistoryBlock object
Args : type (string), the commands/comments to parse (array ref), and a verbose flag (0 or 1; optional)
Comments:

equals

Name : equals
Usage : $block->equals($another);
Function: compare if two Block objects are equal
Returns : boolean
Args : a Block object

rename_otus

Name : rename_otus
Usage : $nexus->rename_otus(%translation);
Function: rename all OTUs
Returns : a new nexus object with new OTU names
Args : a ref to hash based on OTU name pairs