Bio::Network::IO::dip_tab 1.5.2_100
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Bio::Network::IO::dip_tab 1.5.2_100 Ranking & Summary
File size:
0.097 MB
Platform:
Any Platform
License:
Perl Artistic License
Price:
Downloads:
826
Date added:
2007-07-21
Publisher:
Richard Adams and Brian Osborne
Bio::Network::IO::dip_tab 1.5.2_100 description
Bio::Network::IO::dip_tab is a Perl class for parsing interaction data in DIP tab-delimited format.
SYNOPSIS
Do not use this module directly, use Bio::Network::IO. For example:
my $io = Bio::Network::IO->new(-format => dip_tab,
-file => data.dip);
my $network = $io->next_network;
The Database of Interacting Proteins (DIP) is a protein interaction database (see http://dip.doe-mbi.ucla.edu/dip/Main.cgi). The species-specific subsets of the DIP database are provided in a simple, tab-delimited format. The tab-separated columns are:
edge DIP id
node A DIP id
node A optional id
node A SwissProt id
node A PIR id
node A GenBank GI id
node B DIP id
node B optional id
node B SwissProt id
node B PIR id
node B GenBank GI id
The source or namespace of the optional id in columns 3 and 8 varies from species to species, and optional ids are frequently absent.
SYNOPSIS
Do not use this module directly, use Bio::Network::IO. For example:
my $io = Bio::Network::IO->new(-format => dip_tab,
-file => data.dip);
my $network = $io->next_network;
The Database of Interacting Proteins (DIP) is a protein interaction database (see http://dip.doe-mbi.ucla.edu/dip/Main.cgi). The species-specific subsets of the DIP database are provided in a simple, tab-delimited format. The tab-separated columns are:
edge DIP id
node A DIP id
node A optional id
node A SwissProt id
node A PIR id
node A GenBank GI id
node B DIP id
node B optional id
node B SwissProt id
node B PIR id
node B GenBank GI id
The source or namespace of the optional id in columns 3 and 8 varies from species to species, and optional ids are frequently absent.
Bio::Network::IO::dip_tab 1.5.2_100 Screenshot
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Bio::Network::IO::dip_tab 1.5.2_100 Keywords
IO
DIP
Node B
Perl class
data in
id
tab
node
1.5.2
100
tab-delimited
Bio::Network::IO::dip_tab 1.5.2_100
BioNetworkIOdiptab
Bio::Network::IO::dip_tab 1.5.2_100
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Bio::Network::IO::dip_tab 1.5.2_100 Copyright
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